CRAN Package Check Results for Package optpart

Last updated on 2014-12-20 09:53:50.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1-1 5.20 55.62 60.82 NOTE
r-devel-linux-x86_64-debian-gcc 2.1-1 4.94 55.69 60.63 NOTE
r-devel-linux-x86_64-fedora-clang 2.1-1 143.50 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1-1 134.68 NOTE
r-devel-osx-x86_64-clang 2.1-1 112.16 NOTE
r-devel-windows-ix86+x86_64 2.1-1 23.00 111.00 134.00 OK
r-patched-linux-x86_64 2.1-1 5.36 57.14 62.49 NOTE
r-patched-solaris-sparc 2.1-1 925.70 ERROR
r-patched-solaris-x86 2.1-1 162.80 ERROR
r-release-linux-ix86 2.1-1 6.46 67.43 73.89 OK
r-release-linux-x86_64 2.1-1 5.20 59.14 64.34 OK
r-release-osx-x86_64-mavericks 2.1-1 OK
r-release-osx-x86_64-snowleopard 2.1-1 ERROR
r-release-windows-ix86+x86_64 2.1-1 24.00 111.00 135.00 OK
r-oldrel-windows-ix86+x86_64 2.1-1 22.00 110.00 132.00 OK

Check Details

Version: 2.1-1
Check: compiled code
Result: NOTE
    File ‘optpart/libs/optpart.so’:
     Found ‘_gfortran_rand’, possibly from ‘rand’ (Fortran)
     Object: ‘permute.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64

Version: 2.1-1
Check: compiled code
Result: NOTE
    File ‘optpart/libs/optpart.so’:
     Found ‘__gfortran_rand’, possibly from ‘rand’ (Fortran)
     Object: ‘permute.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-clang

Version: 2.1-1
Check: examples
Result: ERROR
    Running examples in ‘optpart-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: tabdev
    > ### Title: Classification Validity Assessment by Table Deviance
    > ### Aliases: tabdev summary.tabdev tabdev.stride tabdev.default
    > ### Keywords: cluster
    >
    > ### ** Examples
    >
    > data(shoshveg)
    > dis.bc <- dsvdis(shoshveg,'bray/curtis')
    > opt.5 <- optpart(5,dis.bc)
    > tabdev(shoshveg,opt.5)
    
     *** caught segfault ***
    address 3ff00000, cause 'memory not mapped'
    
    Traceback:
     1: .Fortran("tabdev", as.double(as.matrix(x)), as.integer(numplt), as.integer(numspc), as.integer(clustering), as.integer(ntypes), spcdev = as.double(spcdev), totdev = as.double(totdev), pval = as.double(pval), as.integer(nitr), as.double(relsum), as.double(colsum), as.double(spcsum), as.integer(pclass), as.integer(tclass), PACKAGE = "optpart")
     2: tabdev.default(shoshveg, opt.5)
     3: tabdev(shoshveg, opt.5)
    aborting ...
Flavor: r-patched-solaris-sparc

Version: 2.1-1
Check: compiled code
Result: NOTE
    File ‘optpart/libs/optpart.so’:
     Found ‘rand_’, possibly from ‘rand’ (Fortran)
     Object: ‘permute.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-patched-solaris-x86

Version: 2.1-1
Check: examples
Result: ERROR
    Running examples in ‘optpart-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: tabdev
    > ### Title: Classification Validity Assessment by Table Deviance
    > ### Aliases: tabdev summary.tabdev tabdev.stride tabdev.default
    > ### Keywords: cluster
    >
    > ### ** Examples
    >
    > data(shoshveg)
    > dis.bc <- dsvdis(shoshveg,'bray/curtis')
    > opt.5 <- optpart(5,dis.bc)
    > tabdev(shoshveg,opt.5)
    
     *** caught segfault ***
    address 1, cause 'memory not mapped'
    
    Traceback:
     1: .Fortran("tabdev", as.double(as.matrix(x)), as.integer(numplt), as.integer(numspc), as.integer(clustering), as.integer(ntypes), spcdev = as.double(spcdev), totdev = as.double(totdev), pval = as.double(pval), as.integer(nitr), as.double(relsum), as.double(colsum), as.double(spcsum), as.integer(pclass), as.integer(tclass), PACKAGE = "optpart")
     2: tabdev.default(shoshveg, opt.5)
     3: tabdev(shoshveg, opt.5)
    aborting ...
Flavor: r-patched-solaris-x86

Version: 2.1-1
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64-snowleopard