CRAN Package Check Results for Package optpart

Last updated on 2015-07-02 19:47:24.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1-1 4.41 48.19 52.60 NOTE
r-devel-linux-x86_64-debian-gcc 2.1-1 4.36 46.82 51.18 NOTE
r-devel-linux-x86_64-fedora-clang 2.1-1 101.88 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1-1 96.22 NOTE
r-devel-osx-x86_64-clang 2.1-1 92.30 NOTE
r-devel-windows-ix86+x86_64 2.1-1 21.00 88.00 109.00 NOTE
r-patched-linux-x86_64 2.1-1 4.22 46.51 50.72 NOTE
r-patched-solaris-sparc 2.1-1 697.20 ERROR
r-patched-solaris-x86 2.1-1 143.20 ERROR
r-release-linux-x86_64 2.1-1 4.24 46.96 51.20 NOTE
r-release-osx-x86_64-mavericks 2.1-1 NOTE
r-release-windows-ix86+x86_64 2.1-1 19.00 116.00 135.00 OK
r-oldrel-windows-ix86+x86_64 2.1-1 24.00 114.00 138.00 OK

Check Details

Version: 2.1-1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     disdiam.clustering disdiam.default disdiam.partition disdiam.stride
     extract.stride optpart.clustering optpart.default optpart.partana
     optpart.partition optpart.stride optsil.clustering optsil.default
     optsil.partana optsil.partition optsil.stride partana.clustering
     partana.default partana.partition partana.stride partition.clustering
     partition.partana plot.clique plot.mps plot.murdoch plot.partana
     plot.stride print.disdiam refine.default refine.nmds refine.pco
     silhouette.clustering silhouette.partana silhouette.stride
     summary.clique summary.murdoch summary.partana summary.tabdev
     tabdev.default tabdev.stride
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.1-1
Check: R code for possible problems
Result: NOTE
    clique.test: no visible global function definition for ‘plot’
    clique.test: no visible global function definition for ‘abline’
    mps.test: no visible global function definition for ‘plot’
    mps.test: no visible global function definition for ‘points’
    mps.test: no visible global function definition for ‘boxplot’
    mps.test: no visible global function definition for ‘wilcox.test’
    murdoch: no visible global function definition for ‘phyper’
    plot.clique: no visible global function definition for ‘plot’
    plot.mps: no visible global function definition for ‘plot’
    plot.mps: no visible global function definition for ‘lines’
    plot.murdoch: no visible global function definition for ‘plot’
    plot.murdoch: no visible global function definition for ‘axis’
    plot.murdoch: no visible global function definition for ‘points’
    plot.murdoch: no visible global function definition for ‘identify’
    plot.partana: no visible global function definition for ‘heat.colors’
    plot.partana: no visible global function definition for ‘image’
    plot.partana: no visible global function definition for ‘plot’
    plot.stride: no visible global function definition for ‘par’
    plot.stride: no visible global function definition for ‘plot’
    plot.stride: no visible global function definition for ‘axis’
    plot.stride: no visible global function definition for ‘mtext’
    refine.nmds: no visible global function definition for ‘plot’
    refine.nmds: no visible global function definition for ‘points’
    refine.pco: no visible global function definition for ‘plot’
    refine.pco: no visible global function definition for ‘points’
    slice: no visible global function definition for ‘locator’
    slice: no visible global function definition for ‘abline’
    slice: no visible global function definition for ‘cutree’
    stride: no visible global function definition for ‘cutree’
    Undefined global functions or variables:
     abline axis boxplot cutree heat.colors identify image lines locator
     mtext par phyper plot points wilcox.test
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.1-1
Check: compiled code
Result: NOTE
    File ‘optpart/libs/optpart.so’:
     Found ‘_gfortran_rand’, possibly from ‘rand’ (Fortran)
     Object: ‘permute.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.1-1
Check: R code for possible problems
Result: NOTE
    clique.test: no visible global function definition for ‘plot’
    clique.test: no visible global function definition for ‘abline’
    mps.test: no visible global function definition for ‘plot’
    mps.test: no visible global function definition for ‘points’
    mps.test: no visible global function definition for ‘boxplot’
    mps.test: no visible global function definition for ‘wilcox.test’
    murdoch: no visible global function definition for ‘phyper’
    plot.clique: no visible global function definition for ‘plot’
    plot.mps: no visible global function definition for ‘plot’
    plot.mps: no visible global function definition for ‘lines’
    plot.murdoch: no visible global function definition for ‘plot’
    plot.murdoch: no visible global function definition for ‘axis’
    plot.murdoch: no visible global function definition for ‘points’
    plot.murdoch: no visible global function definition for ‘identify’
    plot.partana: no visible global function definition for ‘heat.colors’
    plot.partana: no visible global function definition for ‘image’
    plot.partana: no visible global function definition for ‘plot’
    plot.stride: no visible global function definition for ‘par’
    plot.stride: no visible global function definition for ‘plot’
    plot.stride: no visible global function definition for ‘axis’
    plot.stride: no visible global function definition for ‘mtext’
    refine.nmds: no visible global function definition for ‘plot’
    refine.nmds: no visible global function definition for ‘points’
    refine.pco: no visible global function definition for ‘plot’
    refine.pco: no visible global function definition for ‘points’
    slice: no visible global function definition for ‘locator’
    slice: no visible global function definition for ‘abline’
    slice: no visible global function definition for ‘cutree’
    stride: no visible global function definition for ‘cutree’
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 2.1-1
Check: compiled code
Result: NOTE
    File ‘optpart/libs/optpart.so’:
     Found ‘__gfortran_rand’, possibly from ‘rand’ (Fortran)
     Object: ‘permute.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks

Version: 2.1-1
Check: compiled code
Result: NOTE
    File ‘optpart/libs/optpart.so’:
     Found ‘rand_’, possibly from ‘rand’ (Fortran)
     Object: ‘permute.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 2.1-1
Check: examples
Result: ERROR
    Running examples in ‘optpart-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: tabdev
    > ### Title: Classification Validity Assessment by Table Deviance
    > ### Aliases: tabdev summary.tabdev tabdev.stride tabdev.default
    > ### Keywords: cluster
    >
    > ### ** Examples
    >
    > data(shoshveg)
    > dis.bc <- dsvdis(shoshveg,'bray/curtis')
    > opt.5 <- optpart(5,dis.bc)
    > tabdev(shoshveg,opt.5)
    
     *** caught segfault ***
    address 3ff00000, cause 'memory not mapped'
    
    Traceback:
     1: .Fortran("tabdev", as.double(as.matrix(x)), as.integer(numplt), as.integer(numspc), as.integer(clustering), as.integer(ntypes), spcdev = as.double(spcdev), totdev = as.double(totdev), pval = as.double(pval), as.integer(nitr), as.double(relsum), as.double(colsum), as.double(spcsum), as.integer(pclass), as.integer(tclass), PACKAGE = "optpart")
     2: tabdev.default(shoshveg, opt.5)
     3: tabdev(shoshveg, opt.5)
    aborting ...
Flavor: r-patched-solaris-sparc

Version: 2.1-1
Check: examples
Result: ERROR
    Running examples in ‘optpart-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: tabdev
    > ### Title: Classification Validity Assessment by Table Deviance
    > ### Aliases: tabdev summary.tabdev tabdev.stride tabdev.default
    > ### Keywords: cluster
    >
    > ### ** Examples
    >
    > data(shoshveg)
    > dis.bc <- dsvdis(shoshveg,'bray/curtis')
    > opt.5 <- optpart(5,dis.bc)
    > tabdev(shoshveg,opt.5)
    
     *** caught segfault ***
    address 1, cause 'memory not mapped'
    
    Traceback:
     1: .Fortran("tabdev", as.double(as.matrix(x)), as.integer(numplt), as.integer(numspc), as.integer(clustering), as.integer(ntypes), spcdev = as.double(spcdev), totdev = as.double(totdev), pval = as.double(pval), as.integer(nitr), as.double(relsum), as.double(colsum), as.double(spcsum), as.integer(pclass), as.integer(tclass), PACKAGE = "optpart")
     2: tabdev.default(shoshveg, opt.5)
     3: tabdev(shoshveg, opt.5)
    aborting ...
Flavor: r-patched-solaris-x86