CRAN Package Check Results for Package palaeoSig

Last updated on 2014-07-29 17:47:55.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-2 4.19 64.58 68.77 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-2 4.16 62.10 66.26 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-2 156.46 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-2 142.85 NOTE
r-devel-osx-x86_64-clang 1.1-2 119.18 NOTE
r-devel-windows-ix86+x86_64 1.1-2 14.00 90.00 104.00 NOTE
r-patched-linux-x86_64 1.1-2 4.21 61.20 65.41 NOTE
r-patched-solaris-sparc 1.1-2 770.60 NOTE
r-patched-solaris-x86 1.1-2 177.00 NOTE
r-release-linux-ix86 1.1-2 5.10 76.02 81.12 NOTE
r-release-linux-x86_64 1.1-2 4.35 64.08 68.43 NOTE
r-release-osx-x86_64-mavericks 1.1-2 ERROR
r-release-osx-x86_64-snowleopard 1.1-2 ERROR
r-release-windows-ix86+x86_64 1.1-2 14.00 100.00 114.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1-2 13.00 92.00 105.00 NOTE

Check Details

Version: 1.1-2
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     rioja vegan TeachingDemos gstat fields mapproj
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.1-2
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: TeachingDemos
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-2
Check: Rd line widths
Result: NOTE
    Rd file 'jointsig.Rd':
     \examples lines wider than 100 characters:
     rlgh.js <- jointsig(spp = sqrt(SWAP$spec), fos = sqrt(RLGH$spec), var1 = SWAP$pH, var2 = sample(SWAP$pH), method = "randomTF", n = 99, ... [TRUNCATED]
    
    Rd file 'mat.h.Rd':
     \examples lines wider than 100 characters:
     sinproj <- mapproject(x = arctic.env$Longitude, y = arctic.env$Latitude, proj = "sinusoidal", ori = rotate(arctic.env$Lat, arctic.env$L ... [TRUNCATED]
     mat.reconH <- mat.h(arctic.pollen, arctic.env$tjul, noanalogues = 10, arctic.dist, resid.vModel$range[2])
    
    Rd file 'multi.mat.Rd':
     \usage lines wider than 90 characters:
     multi.mat(training.spp, envs, core.spp, noanalogues = 10, method = "sq-chord", run = "both")
     \examples lines wider than 100 characters:
     sinproj <- mapproject(x = arctic.env$Longitude, y = arctic.env$Latitude, proj = "sinusoidal", ori = rotate(arctic.env$Lat, arctic.env$L ... [TRUNCATED]
     sim.MAT.R2 <- mapply(cor, as.data.frame(multi.mat(arctic.pollen, sims, noanalogues = 5)[[1]]), as.data.frame(sims))^2
    
    Rd file 'randomTF.Rd':
     \examples lines wider than 100 characters:
     rlghr <- randomTF(spp = sqrt(SWAP$spec), env = data.frame(pH = SWAP$pH), fos = sqrt(RLGH$spec), n = 99, fun = WA, col = 1)
    
    Rd file 'rne.Rd':
     \examples lines wider than 100 characters:
     arctic.dist <- rdist.earth(cbind(arctic.env$Longitude, arctic.env$Latitude)[1:100,], miles = FALSE)
     arctic.rne <- rne(y = arctic.pollen[1:100,], env = arctic.env$tjul[1:100], geodist = arctic.dist, fun = MAT, neighbours = c(0,50,20 ... [TRUNCATED]
    
    Rd file 'rotate.Rd':
     \examples lines wider than 100 characters:
     points(mapproject(x = arctic.env$Longitude, y = arctic.env$Latitude, proj = "sinusoidal", orientation = ori), pch = 20, col = 2)
    
    Rd file 'simulateSpatial.Rd':
     \examples lines wider than 100 characters:
     sinproj <- mapproject(x = arctic.env$Longitude, y = arctic.env$Latitude, proj = "sinusoidal", ori = rotate(arctic.env$Lat, arctic.env ... [TRUNCATED]
     sims <- simulateSpatial(arctic.data, nsim=99, arctic.data$tjul, arctic.vModel) #99 simulations is way too few except as a demonstra ... [TRUNCATED]
     sim.MAT.R2 <- mapply(cor, as.data.frame(multi.mat(arctic.pollen, sims,noanalogues = 5)[[1]]), as.data.frame(sims))^2
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1-2
Check: package dependencies
Result: ERROR
    Package required but not available: gstat
    
    Depends: includes the non-default packages:
     rioja vegan TeachingDemos gstat fields mapproj
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1-2
Check: whether package can be installed
Result: ERROR
    Installation failed.
    See /Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/snowleopard-x86_64/results/3.1/palaeoSig.Rcheck/00install.out for details.
Flavor: r-release-osx-x86_64-snowleopard