CRAN Package Check Results for Package palaeoSig

Last updated on 2014-11-29 07:51:16.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-2 7.98 101.08 109.06 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-2 7.54 99.29 106.83 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-2 248.29 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-2 242.98 NOTE
r-devel-osx-x86_64-clang 1.1-2 228.74 NOTE
r-devel-windows-ix86+x86_64 1.1-2 21.00 131.00 152.00 NOTE
r-patched-linux-x86_64 1.1-2 8.37 106.70 115.07 NOTE
r-patched-solaris-sparc 1.1-2 849.90 NOTE
r-patched-solaris-x86 1.1-2 346.90 NOTE
r-release-linux-ix86 1.1-2 9.61 128.24 137.85 NOTE
r-release-linux-x86_64 1.1-2 8.05 107.30 115.35 NOTE
r-release-osx-x86_64-mavericks 1.1-2 ERROR
r-release-osx-x86_64-snowleopard 1.1-2 ERROR
r-release-windows-ix86+x86_64 1.1-2 26.00 152.00 178.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1-2 21.00 136.00 157.00 NOTE

Check Details

Version: 1.1-2
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘rioja’ ‘vegan’ ‘TeachingDemos’ ‘gstat’ ‘fields’ ‘mapproj’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.1-2
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘TeachingDemos’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-2
Check: Rd line widths
Result: NOTE
    Rd file 'jointsig.Rd':
     \examples lines wider than 100 characters:
     rlgh.js <- jointsig(spp = sqrt(SWAP$spec), fos = sqrt(RLGH$spec), var1 = SWAP$pH, var2 = sample(SWAP$pH), method = "randomTF", n = 99, ... [TRUNCATED]
    
    Rd file 'mat.h.Rd':
     \examples lines wider than 100 characters:
     sinproj <- mapproject(x = arctic.env$Longitude, y = arctic.env$Latitude, proj = "sinusoidal", ori = rotate(arctic.env$Lat, arctic.env$L ... [TRUNCATED]
     mat.reconH <- mat.h(arctic.pollen, arctic.env$tjul, noanalogues = 10, arctic.dist, resid.vModel$range[2])
    
    Rd file 'multi.mat.Rd':
     \usage lines wider than 90 characters:
     multi.mat(training.spp, envs, core.spp, noanalogues = 10, method = "sq-chord", run = "both")
     \examples lines wider than 100 characters:
     sinproj <- mapproject(x = arctic.env$Longitude, y = arctic.env$Latitude, proj = "sinusoidal", ori = rotate(arctic.env$Lat, arctic.env$L ... [TRUNCATED]
     sim.MAT.R2 <- mapply(cor, as.data.frame(multi.mat(arctic.pollen, sims, noanalogues = 5)[[1]]), as.data.frame(sims))^2
    
    Rd file 'randomTF.Rd':
     \examples lines wider than 100 characters:
     rlghr <- randomTF(spp = sqrt(SWAP$spec), env = data.frame(pH = SWAP$pH), fos = sqrt(RLGH$spec), n = 99, fun = WA, col = 1)
    
    Rd file 'rne.Rd':
     \examples lines wider than 100 characters:
     arctic.dist <- rdist.earth(cbind(arctic.env$Longitude, arctic.env$Latitude)[1:100,], miles = FALSE)
     arctic.rne <- rne(y = arctic.pollen[1:100,], env = arctic.env$tjul[1:100], geodist = arctic.dist, fun = MAT, neighbours = c(0,50,20 ... [TRUNCATED]
    
    Rd file 'rotate.Rd':
     \examples lines wider than 100 characters:
     points(mapproject(x = arctic.env$Longitude, y = arctic.env$Latitude, proj = "sinusoidal", orientation = ori), pch = 20, col = 2)
    
    Rd file 'simulateSpatial.Rd':
     \examples lines wider than 100 characters:
     sinproj <- mapproject(x = arctic.env$Longitude, y = arctic.env$Latitude, proj = "sinusoidal", ori = rotate(arctic.env$Lat, arctic.env ... [TRUNCATED]
     sims <- simulateSpatial(arctic.data, nsim=99, arctic.data$tjul, arctic.vModel) #99 simulations is way too few except as a demonstra ... [TRUNCATED]
     sim.MAT.R2 <- mapply(cor, as.data.frame(multi.mat(arctic.pollen, sims,noanalogues = 5)[[1]]), as.data.frame(sims))^2
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1-2
Check: package dependencies
Result: ERROR
    Package required but not available: ‘gstat’
    
    Depends: includes the non-default packages:
     ‘rioja’ ‘vegan’ ‘TeachingDemos’ ‘gstat’ ‘fields’ ‘mapproj’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1-2
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64-snowleopard