CRAN Package Check Results for Package paleoTS

Last updated on 2014-08-22 08:49:14.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4-4 0.98 20.04 21.01 OK
r-devel-linux-x86_64-debian-gcc 0.4-4 0.89 20.50 21.39 OK
r-devel-linux-x86_64-fedora-clang 0.4-4 43.38 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4-4 40.64 NOTE
r-devel-osx-x86_64-clang 0.4-4 38.86 OK
r-devel-windows-ix86+x86_64 0.4-4 4.00 32.00 36.00 OK
r-patched-linux-x86_64 0.4-4 0.89 21.02 21.91 OK
r-patched-solaris-sparc 0.4-4 276.50 OK
r-patched-solaris-x86 0.4-4 55.10 OK
r-release-linux-ix86 0.4-4 1.31 28.85 30.16 OK
r-release-linux-x86_64 0.4-4 0.93 22.10 23.04 OK
r-release-osx-x86_64-mavericks 0.4-4 OK
r-release-osx-x86_64-snowleopard 0.4-4 OK
r-release-windows-ix86+x86_64 0.4-4 4.00 33.00 37.00 OK
r-oldrel-windows-ix86+x86_64 0.4-4 3.00 34.00 37.00 OK

Check Details

Version: 0.4-4
Check: Rd line widths
Result: NOTE
    Rd file 'as.paleoTS.Rd':
     \usage lines wider than 90 characters:
     as.paleoTS(mm, vv, nn, tt, MM = NULL, genpars = NULL, label = NULL, start.age = NULL, oldest=c("first", "last"), reset.time=TRUE)
     \examples lines wider than 100 characters:
     y <- as.paleoTS(mm=rnorm(10), vv=rep(1,10), nn=rep(25,10), tt=1:10, label="white noise time series")
    
    Rd file 'cat.paleoTS.Rd':
     \examples lines wider than 100 characters:
     # show all possible shift points for 20 samples divided into two semgments (assuming each has at least 6 samples)
    
    Rd file 'fit.sgs.Rd':
     \usage lines wider than 90 characters:
     fit.sgs(y, minb = 5, oshare = TRUE, pool = TRUE, silent = FALSE, hess = FALSE, meth = "L-BFGS-B", model = "GRW")
     opt.sgs(y, gg, cl = list(fnscale = -1), meth = "L-BFGS-B", hess = FALSE, oshare = TRUE, model = "GRW")
    
    Rd file 'fit3models.Rd':
     \examples lines wider than 100 characters:
     x2<- sim.GRW(ns=20, ms=0.2, vs=0.1) # step variance relatively low compared to sampling error == Noisy
    
    Rd file 'fitGpunc.Rd':
     \usage lines wider than 90 characters:
     fitGpunc(y, ng = 2, minb = 5, pool = TRUE, oshare = TRUE, method=c('AD', 'Joint'), silent = FALSE, hess=FALSE, ...)
     opt.punc(y, gg, cl = list(fnscale = -1), pool = TRUE, meth = "L-BFGS-B", hess = FALSE, oshare)
    
    Rd file 'opt.RW.Mult.Rd':
     \usage lines wider than 90 characters:
     opt.RW.Mult(yl, cl=list(fnscale=-1), model=c("GRW", "URW"), pool=TRUE, meth="L-BFGS-B", hess=FALSE)
    
    Rd file 'plot.paleoTS.Rd':
     \usage lines wider than 90 characters:
     plot(x, nse = 1, pool = FALSE, add = FALSE, modelFit=NULL, pch=19, lwd=1.5, ylim=NULL, ...)
    
    Rd file 'sim.OU.Rd':
     \usage lines wider than 90 characters:
     sim.OU(ns = 20, anc = 0, theta = 10, alpha = 0.3, vs = 0.1, vp = 1, nn = rep(20, ns), tt = 0:(ns-1))
    
    Rd file 'sim.covTrack.Rd':
     \usage lines wider than 90 characters:
     sim.covTrack(ns = 20, b = 1, evar = 0.1, z, nn = rep(20, times = ns), tt = 0:(ns-1), vp = 1)
    
    Rd file 'sim.punc.Rd':
     \usage lines wider than 90 characters:
     sim.punc(ns = c(10, 10), theta = c(0, 1), omega=rep(0,length(theta)), nn = rep(30, sum(ns)), tt = 0:(sum(ns)-1), vp = 1)
     sim.sgs(ns = c(20, 20, 20), theta = 0, omega = 1, ms = 1, vs = 0.1, nn=rep(30, sum(ns)), tt = 0:(sum(ns)-1), vp = 1)
     sim.GRW.shift(ns = c(10, 10), ms = c(0, 1), vs = c(0.5, 0.5), nn = rep(30, sum(ns)), tt = 0:(sum(ns)-1), vp = 1)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc