CRAN Package Check Results for Package paleotree

Last updated on 2015-07-29 06:47:54.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.4 8.55 89.06 97.61 NOTE
r-devel-linux-x86_64-debian-gcc 2.4 8.50 84.85 93.35 NOTE
r-devel-linux-x86_64-fedora-clang 2.4 193.54 NOTE
r-devel-linux-x86_64-fedora-gcc 2.4 180.83 NOTE
r-devel-osx-x86_64-clang 2.4 148.66 OK
r-devel-windows-ix86+x86_64 2.4 18.00 137.00 155.00 NOTE
r-patched-linux-x86_64 2.4 10.18 87.58 97.75 OK
r-patched-solaris-sparc 2.4 1213.80 OK
r-patched-solaris-x86 2.4 250.30 OK
r-release-linux-x86_64 2.4 10.85 89.70 100.54 OK
r-release-osx-x86_64-mavericks 2.4 OK
r-release-windows-ix86+x86_64 2.4 27.00 139.00 166.00 OK
r-oldrel-windows-ix86+x86_64 2.4 24.00 227.00 251.00 OK

Check Details

Version: 2.4
Check: R code for possible problems
Result: NOTE
    addTermBranchLength: no visible global function definition for ‘is’
    bin_cal3TimePaleoPhy: no visible global function definition for ‘is’
    bin_cal3TimePaleoPhy : <anonymous>: no visible global function
     definition for ‘runif’
    bin_timePaleoPhy: no visible global function definition for ‘is’
    bin_timePaleoPhy : <anonymous>: no visible global function definition
     for ‘runif’
    branchClasses: no visible global function definition for ‘is’
    cal3TimePaleoPhy: no visible global function definition for ‘is’
    cal3TimePaleoPhy : <anonymous>: no visible global function definition
     for ‘runif’
    cal3TimePaleoPhy: no visible global function definition for ‘dgamma’
    cal3TimePaleoPhy: no visible global function definition for ‘reorder’
    cal3TimePaleoPhy: no visible global function definition for ‘par’
    cal3TimePaleoPhy: no visible global function definition for ‘layout’
    cladogeneticTraitCont: no visible global function definition for
     ‘rnorm’
    cleanNewPhylo: no visible global function definition for ‘reorder’
    collapseNodes: no visible global function definition for ‘is’
    compareNodeAges: no visible global function definition for ‘is’
    compareTermBranches: no visible global function definition for ‘is’
    constrainParPaleo: no visible global function definition for ‘is’
    constrainParPaleo : <anonymous>: no visible global function definition
     for ‘as.formula’
    constrainParsePaleo: no visible global function definition for
     ‘as.formula’
    deadTree: no visible global function definition for ‘rexp’
    degradeTree: no visible global function definition for ‘is’
    depthRainbow: no visible global function definition for ‘is’
    depthRainbow: no visible global function definition for ‘rainbow’
    depthRainbow: no visible global function definition for ‘plot’
    dropExtant: no visible global function definition for ‘is’
    dropExtinct: no visible global function definition for ‘is’
    dropZLB: no visible global function definition for ‘is’
    expandConstrainForm: no visible global function definition for
     ‘as.formula’
    expandTaxonTree: no visible global function definition for ‘is’
    expandTaxonTree: no visible global function definition for ‘layout’
    fixRootTime: no visible global function definition for ‘is’
    fourDate2timeList: no visible global function definition for ‘is’
    freqRat: no visible global function definition for ‘lm’
    freqRat: no visible global function definition for ‘coefficients’
    freqRat: no visible global function definition for ‘hist’
    getSampProbDisc: no visible global function definition for ‘optim’
    getSampRateCont: no visible global function definition for ‘optim’
    makePBDBtaxonTree: no visible global function definition for ‘is’
    make_inverseSurv : logL_invSurv: no visible global function definition
     for ‘layout’
    make_inverseSurv : logL_invSurv: no visible global function definition
     for ‘plot’
    make_inverseSurv : logL_invSurv: no visible global function definition
     for ‘lines’
    make_inverseSurv : logL_invSurv: no visible global function definition
     for ‘legend’
    minBranchLength: no visible global function definition for ‘is’
    multiDiv: no visible binding for global variable ‘quantile’
    optimPaleo: no visible global function definition for ‘is’
    optimPaleo: no visible global function definition for ‘optim’
    parInit.constrained: no visible global function definition for ‘runif’
    parInit.paleotreeFunc: no visible global function definition for
     ‘runif’
    perCapitaRates: no visible global function definition for ‘lines’
    perCapitaRates: no visible global function definition for ‘legend’
    phyloDiv: no visible global function definition for ‘is’
    phyloDiv: no visible global function definition for ‘layout’
    phyloDiv: no visible global function definition for ‘par’
    plotMultiDiv: no visible global function definition for ‘plot’
    plotMultiDiv: no visible global function definition for ‘rainbow’
    plotMultiDiv: no visible global function definition for ‘lines’
    plotMultiDiv: no visible global function definition for ‘polygon’
    plotOccData: no visible global function definition for ‘par’
    plotOccData: no visible global function definition for ‘plot’
    plotOccData: no visible global function definition for ‘rainbow’
    plotOccData: no visible global function definition for ‘lines’
    plotTraitgram: no visible global function definition for ‘is’
    plotTraitgram: no visible global function definition for ‘plot’
    plotTraitgram: no visible global function definition for ‘lines’
    pullOccListData: no visible binding for global variable ‘is’
    queryMissingParents: no visible global function definition for
     ‘read.csv’
    resolveTreeCharMechanism: no visible global function definition for
     ‘reorder’
    rootSplit: no visible global function definition for ‘is’
    sampleRanges: no visible global function definition for ‘runif’
    sampleRanges : <anonymous>: no visible global function definition for
     ‘dbeta’
    sampleRanges: no visible global function definition for ‘lines’
    sampleRanges: no visible global function definition for ‘rexp’
    sampleRanges : <anonymous>: no visible global function definition for
     ‘runif’
    simFossilTaxa: no visible global function definition for ‘rexp’
    simFossilTaxa: no visible global function definition for ‘title’
    taxa2phylo: no visible global function definition for ‘reorder’
    testEdgeMat: no visible global function definition for ‘is’
    timeLadderTree: no visible global function definition for ‘is’
    timeList2fourDate: no visible global function definition for ‘is’
    timeList2fourDate: no visible binding for global variable ‘is’
    timePaleoPhy: no visible global function definition for ‘is’
    timePaleoPhy : <anonymous>: no visible global function definition for
     ‘runif’
    timePaleoPhy: no visible global function definition for ‘par’
    timePaleoPhy: no visible global function definition for ‘layout’
    timeSliceTree: no visible global function definition for ‘is’
    timeSliceTree: no visible global function definition for ‘layout’
    unitLengthTree: no visible global function definition for ‘is’
    Undefined global functions or variables:
     as.formula coefficients dbeta dgamma hist is layout legend lines lm
     optim par plot polygon quantile rainbow read.csv reorder rexp rnorm
     runif title
    Consider adding
     importFrom("grDevices", "rainbow")
     importFrom("graphics", "hist", "layout", "legend", "lines", "par",
     "plot", "polygon", "title")
     importFrom("methods", "is")
     importFrom("stats", "as.formula", "coefficients", "dbeta", "dgamma",
     "lm", "optim", "quantile", "reorder", "rexp", "rnorm",
     "runif")
     importFrom("utils", "read.csv")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64