CRAN Package Check Results for Package paleotree

Last updated on 2015-07-03 21:46:40.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.4 8.39 86.61 95.00 NOTE
r-devel-linux-x86_64-debian-gcc 2.4 8.50 83.79 92.30 NOTE
r-devel-linux-x86_64-fedora-clang 2.4 192.57 NOTE
r-devel-linux-x86_64-fedora-gcc 2.4 181.00 NOTE
r-devel-osx-x86_64-clang 2.4 176.88 OK
r-devel-windows-ix86+x86_64 2.4 18.00 131.00 149.00 NOTE
r-patched-linux-x86_64 2.4 8.45 84.91 93.36 OK
r-patched-solaris-sparc 2.4 1181.50 OK
r-patched-solaris-x86 2.4 245.10 OK
r-release-linux-x86_64 2.4 8.57 85.34 93.91 OK
r-release-osx-x86_64-mavericks 2.4 OK
r-release-windows-ix86+x86_64 2.4 27.00 187.00 214.00 OK
r-oldrel-windows-ix86+x86_64 2.4 28.00 216.00 244.00 OK

Check Details

Version: 2.4
Check: R code for possible problems
Result: NOTE
    addTermBranchLength: no visible global function definition for ‘is’
    bin_cal3TimePaleoPhy: no visible global function definition for ‘is’
    bin_cal3TimePaleoPhy : <anonymous>: no visible global function
     definition for ‘runif’
    bin_timePaleoPhy: no visible global function definition for ‘is’
    bin_timePaleoPhy : <anonymous>: no visible global function definition
     for ‘runif’
    branchClasses: no visible global function definition for ‘is’
    cal3TimePaleoPhy: no visible global function definition for ‘is’
    cal3TimePaleoPhy : <anonymous>: no visible global function definition
     for ‘runif’
    cal3TimePaleoPhy: no visible global function definition for ‘dgamma’
    cal3TimePaleoPhy: no visible global function definition for ‘reorder’
    cal3TimePaleoPhy: no visible global function definition for ‘par’
    cal3TimePaleoPhy: no visible global function definition for ‘layout’
    cladogeneticTraitCont: no visible global function definition for
     ‘rnorm’
    cleanNewPhylo: no visible global function definition for ‘reorder’
    collapseNodes: no visible global function definition for ‘is’
    compareNodeAges: no visible global function definition for ‘is’
    compareTermBranches: no visible global function definition for ‘is’
    constrainParPaleo: no visible global function definition for ‘is’
    constrainParPaleo : <anonymous>: no visible global function definition
     for ‘as.formula’
    constrainParsePaleo: no visible global function definition for
     ‘as.formula’
    deadTree: no visible global function definition for ‘rexp’
    degradeTree: no visible global function definition for ‘is’
    depthRainbow: no visible global function definition for ‘is’
    depthRainbow: no visible global function definition for ‘rainbow’
    depthRainbow: no visible global function definition for ‘plot’
    dropExtant: no visible global function definition for ‘is’
    dropExtinct: no visible global function definition for ‘is’
    dropZLB: no visible global function definition for ‘is’
    expandConstrainForm: no visible global function definition for
     ‘as.formula’
    expandTaxonTree: no visible global function definition for ‘is’
    expandTaxonTree: no visible global function definition for ‘layout’
    fixRootTime: no visible global function definition for ‘is’
    fourDate2timeList: no visible global function definition for ‘is’
    freqRat: no visible global function definition for ‘lm’
    freqRat: no visible global function definition for ‘coefficients’
    freqRat: no visible global function definition for ‘hist’
    getSampProbDisc: no visible global function definition for ‘optim’
    getSampRateCont: no visible global function definition for ‘optim’
    makePBDBtaxonTree: no visible global function definition for ‘is’
    make_inverseSurv : logL_invSurv: no visible global function definition
     for ‘layout’
    make_inverseSurv : logL_invSurv: no visible global function definition
     for ‘plot’
    make_inverseSurv : logL_invSurv: no visible global function definition
     for ‘lines’
    make_inverseSurv : logL_invSurv: no visible global function definition
     for ‘legend’
    minBranchLength: no visible global function definition for ‘is’
    multiDiv: no visible binding for global variable ‘quantile’
    optimPaleo: no visible global function definition for ‘is’
    optimPaleo: no visible global function definition for ‘optim’
    parInit.constrained: no visible global function definition for ‘runif’
    parInit.paleotreeFunc: no visible global function definition for
     ‘runif’
    perCapitaRates: no visible global function definition for ‘lines’
    perCapitaRates: no visible global function definition for ‘legend’
    phyloDiv: no visible global function definition for ‘is’
    phyloDiv: no visible global function definition for ‘layout’
    phyloDiv: no visible global function definition for ‘par’
    plotMultiDiv: no visible global function definition for ‘plot’
    plotMultiDiv: no visible global function definition for ‘rainbow’
    plotMultiDiv: no visible global function definition for ‘lines’
    plotMultiDiv: no visible global function definition for ‘polygon’
    plotOccData: no visible global function definition for ‘par’
    plotOccData: no visible global function definition for ‘plot’
    plotOccData: no visible global function definition for ‘rainbow’
    plotOccData: no visible global function definition for ‘lines’
    plotTraitgram: no visible global function definition for ‘is’
    plotTraitgram: no visible global function definition for ‘plot’
    plotTraitgram: no visible global function definition for ‘lines’
    pullOccListData: no visible binding for global variable ‘is’
    queryMissingParents: no visible global function definition for
     ‘read.csv’
    resolveTreeCharMechanism: no visible global function definition for
     ‘reorder’
    rootSplit: no visible global function definition for ‘is’
    sampleRanges: no visible global function definition for ‘runif’
    sampleRanges : <anonymous>: no visible global function definition for
     ‘dbeta’
    sampleRanges: no visible global function definition for ‘lines’
    sampleRanges: no visible global function definition for ‘rexp’
    sampleRanges : <anonymous>: no visible global function definition for
     ‘runif’
    simFossilTaxa: no visible global function definition for ‘rexp’
    simFossilTaxa: no visible global function definition for ‘title’
    taxa2phylo: no visible global function definition for ‘reorder’
    testEdgeMat: no visible global function definition for ‘is’
    timeLadderTree: no visible global function definition for ‘is’
    timeList2fourDate: no visible global function definition for ‘is’
    timeList2fourDate: no visible binding for global variable ‘is’
    timePaleoPhy: no visible global function definition for ‘is’
    timePaleoPhy : <anonymous>: no visible global function definition for
     ‘runif’
    timePaleoPhy: no visible global function definition for ‘par’
    timePaleoPhy: no visible global function definition for ‘layout’
    timeSliceTree: no visible global function definition for ‘is’
    timeSliceTree: no visible global function definition for ‘layout’
    unitLengthTree: no visible global function definition for ‘is’
    Undefined global functions or variables:
     as.formula coefficients dbeta dgamma hist is layout legend lines lm
     optim par plot polygon quantile rainbow read.csv reorder rexp rnorm
     runif title
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64