CRAN Package Check Results for Package pamr

Last updated on 2014-04-24 03:47:50.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.54.1 1.46 25.35 26.81 NOTE
r-devel-linux-x86_64-debian-gcc 1.54.1 1.39 25.10 26.49 NOTE
r-devel-linux-x86_64-fedora-clang 1.54.1 51.76 NOTE
r-devel-linux-x86_64-fedora-gcc 1.54.1 48.93 NOTE
r-devel-osx-x86_64-clang 1.54.1 46.41 NOTE
r-devel-osx-x86_64-gcc 1.54.1 NOTE
r-devel-windows-ix86+x86_64 1.54.1 6.00 47.00 53.00 NOTE
r-patched-linux-x86_64 1.54.1 1.42 25.60 27.02 NOTE
r-patched-solaris-sparc 1.54.1 292.10 NOTE
r-patched-solaris-x86 1.54.1 67.40 NOTE
r-release-linux-ix86 1.54.1 2.00 46.00 48.00 NOTE
r-release-linux-x86_64 1.54.1 1.38 25.66 27.04 NOTE
r-release-osx-x86_64-mavericks 1.54.1 WARN
r-release-windows-ix86+x86_64 1.54.1 6.00 47.00 53.00 NOTE
r-oldrel-windows-ix86+x86_64 1.54.1 7.00 50.00 57.00 NOTE

Check Details

Version: 1.54.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘cluster’ ‘survival’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘cluster’ ‘survival’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.54.1
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following functions:
     ‘pamr.plotfdr’ ‘pamr.xl.plotcen.compute’ ‘pamr.xl.plotsurvival’
     ‘pamr.xl.plotsurvival.strata’ ‘pamr.xl.plotsurvival.test’
    Found the platform-specific device:
     ‘win.metafile’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64

Version: 1.54.1
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘doc’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.54.1
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    6c58d32/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks