CRAN Package Check Results for Package party

Last updated on 2016-02-10 11:55:22.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 1.0-25 6.56 44.84 51.40 ERROR
r-devel-linux-x86_64-fedora-clang 1.0-25 156.37 OK
r-devel-linux-x86_64-fedora-gcc 1.0-25 147.17 OK
r-devel-osx-x86_64-clang 1.0-25 173.21 OK
r-devel-windows-ix86+x86_64 1.0-25 36.00 90.00 126.00 ERROR
r-patched-linux-x86_64 1.0-25 4.81 78.12 82.94 OK
r-patched-solaris-sparc 1.0-25 979.40 OK
r-patched-solaris-x86 1.0-25 221.30 OK
r-release-linux-x86_64 1.0-25 5.76 78.79 84.55 OK
r-release-osx-x86_64-mavericks 1.0-25 NOTE
r-release-windows-ix86+x86_64 1.0-25 34.00 196.00 230.00 OK
r-oldrel-windows-ix86+x86_64 1.0-25 42.00 266.00 308.00 OK

Check Details

Version: 1.0-25
Check: examples
Result: ERROR
    Running examples in ‘party-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: cforest
    > ### Title: Random Forest
    > ### Aliases: cforest proximity
    > ### Keywords: tree
    >
    > ### ** Examples
    >
    >
    > set.seed(290875)
    >
    > ### honest (i.e., out-of-bag) cross-classification of
    > ### true vs. predicted classes
    > data("mammoexp", package = "TH.data")
    > table(mammoexp$ME, predict(cforest(ME ~ ., data = mammoexp,
    + control = cforest_unbiased(ntree = 50)),
    + OOB = TRUE))
    
     Never Within a Year Over a Year
     Never 193 28 13
     Within a Year 60 43 1
     Over a Year 56 18 0
    >
    > ### fit forest to censored response
    > if (require("TH.data") && require("survival")) {
    +
    + data("GBSG2", package = "TH.data")
    + bst <- cforest(Surv(time, cens) ~ ., data = GBSG2,
    + control = cforest_unbiased(ntree = 50))
    +
    + ### estimate conditional Kaplan-Meier curves
    + treeresponse(bst, newdata = GBSG2[1:2,], OOB = TRUE)
    +
    + ### if you can't resist to look at individual trees ...
    + party:::prettytree(bst@ensemble[[1]], names(bst@data@get("input")))
    + }
    Loading required package: TH.data
    Loading required package: survival
    Loading required package: MASS
    
    Attaching package: ‘TH.data’
    
    The following object is masked from ‘package:MASS’:
    
     geyser
    
    Error in rowSums(is.na(s)) :
     'x' must be an array of at least two dimensions
    Calls: cforest ... lapply -> FUN -> logrank_trafo -> complete.cases -> rowSums
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0-25
Check: tests
Result: ERROR
    Running the tests in ‘tests/Predict-regtest.R’ failed.
    Last 13 lines of output:
     > stopifnot(isequal(predict(ct, type = "prob"), predict(ct, type = "prob",
     + newdata = GlaucomaM)))
     > stopifnot(isequal(predict(ct, type = "node"), predict(ct, type = "node",
     + newdata = GlaucomaM)))
     > stopifnot(isequal(predict(ct, type = "prob"), treeresponse(ct)))
     >
     > data("GBSG2", package = "TH.data")
     >
     > GBSG2tree <- ctree(Surv(time, cens) ~ ., data = GBSG2)
     Error in rowSums(is.na(s)) :
     'x' must be an array of at least two dimensions
     Calls: ctree ... lapply -> FUN -> logrank_trafo -> complete.cases -> rowSums
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0-25
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘party.Rnw’
     ...
    > legend(0.15, 0.7, pch = 1:2, legend = levels(GlaucomaM$Class),
    + bty = "n")
    
    > data("GBSG2", package = "TH.data")
    
    > stree <- ctree(Surv(time, cens) ~ ., data = GBSG2)
    
     When sourcing ‘party.R’:
    Error: 'x' must be an array of at least two dimensions
    Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 1.0-25
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: party
    Loading required package: grid
    Loading required package: mvtnorm
    Loading required package: modeltools
    Loading required package: stats4
    Loading required package: strucchange
    Loading required package: zoo
    
    Attaching package: ‘zoo’
    
    The following objects are masked from ‘package:base’:
    
     as.Date, as.Date.numeric
    
    Loading required package: sandwich
    Loading required package: coin
    Loading required package: survival
    
    Error: processing vignette ‘party.Rnw’ failed with diagnostics:
     chunk 30 (label = GBSGS-ctree)
    Error in rowSums(is.na(s)) :
     'x' must be an array of at least two dimensions
    Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 1.0-25
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'party-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: cforest
    > ### Title: Random Forest
    > ### Aliases: cforest proximity
    > ### Keywords: tree
    >
    > ### ** Examples
    >
    >
    > set.seed(290875)
    >
    > ### honest (i.e., out-of-bag) cross-classification of
    > ### true vs. predicted classes
    > data("mammoexp", package = "TH.data")
    > table(mammoexp$ME, predict(cforest(ME ~ ., data = mammoexp,
    + control = cforest_unbiased(ntree = 50)),
    + OOB = TRUE))
    
     Never Within a Year Over a Year
     Never 193 28 13
     Within a Year 60 43 1
     Over a Year 56 18 0
    >
    > ### fit forest to censored response
    > if (require("TH.data") && require("survival")) {
    +
    + data("GBSG2", package = "TH.data")
    + bst <- cforest(Surv(time, cens) ~ ., data = GBSG2,
    + control = cforest_unbiased(ntree = 50))
    +
    + ### estimate conditional Kaplan-Meier curves
    + treeresponse(bst, newdata = GBSG2[1:2,], OOB = TRUE)
    +
    + ### if you can't resist to look at individual trees ...
    + party:::prettytree(bst@ensemble[[1]], names(bst@data@get("input")))
    + }
    Loading required package: TH.data
    Loading required package: survival
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    Error in rowSums(is.na(s)) :
     'x' must be an array of at least two dimensions
    Calls: cforest ... lapply -> FUN -> logrank_trafo -> complete.cases -> rowSums
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0-25
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'party-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: cforest
    > ### Title: Random Forest
    > ### Aliases: cforest proximity
    > ### Keywords: tree
    >
    > ### ** Examples
    >
    >
    > set.seed(290875)
    >
    > ### honest (i.e., out-of-bag) cross-classification of
    > ### true vs. predicted classes
    > data("mammoexp", package = "TH.data")
    > table(mammoexp$ME, predict(cforest(ME ~ ., data = mammoexp,
    + control = cforest_unbiased(ntree = 50)),
    + OOB = TRUE))
    
     Never Within a Year Over a Year
     Never 193 28 13
     Within a Year 60 43 1
     Over a Year 56 18 0
    >
    > ### fit forest to censored response
    > if (require("TH.data") && require("survival")) {
    +
    + data("GBSG2", package = "TH.data")
    + bst <- cforest(Surv(time, cens) ~ ., data = GBSG2,
    + control = cforest_unbiased(ntree = 50))
    +
    + ### estimate conditional Kaplan-Meier curves
    + treeresponse(bst, newdata = GBSG2[1:2,], OOB = TRUE)
    +
    + ### if you can't resist to look at individual trees ...
    + party:::prettytree(bst@ensemble[[1]], names(bst@data@get("input")))
    + }
    Loading required package: TH.data
    Loading required package: survival
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    Error in rowSums(is.na(s)) :
     'x' must be an array of at least two dimensions
    Calls: cforest ... lapply -> FUN -> logrank_trafo -> complete.cases -> rowSums
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0-25
Check: running tests for arch ‘i386’
Result: ERROR
    Running the tests in 'tests/Predict-regtest.R' failed.
    Last 13 lines of output:
     > stopifnot(isequal(predict(ct, type = "prob"), predict(ct, type = "prob",
     + newdata = GlaucomaM)))
     > stopifnot(isequal(predict(ct, type = "node"), predict(ct, type = "node",
     + newdata = GlaucomaM)))
     > stopifnot(isequal(predict(ct, type = "prob"), treeresponse(ct)))
     >
     > data("GBSG2", package = "TH.data")
     >
     > GBSG2tree <- ctree(Surv(time, cens) ~ ., data = GBSG2)
     Error in rowSums(is.na(s)) :
     'x' must be an array of at least two dimensions
     Calls: ctree ... lapply -> FUN -> logrank_trafo -> complete.cases -> rowSums
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0-25
Check: running tests for arch ‘x64’
Result: ERROR
    Running the tests in 'tests/Predict-regtest.R' failed.
    Last 13 lines of output:
     > stopifnot(isequal(predict(ct, type = "prob"), predict(ct, type = "prob",
     + newdata = GlaucomaM)))
     > stopifnot(isequal(predict(ct, type = "node"), predict(ct, type = "node",
     + newdata = GlaucomaM)))
     > stopifnot(isequal(predict(ct, type = "prob"), treeresponse(ct)))
     >
     > data("GBSG2", package = "TH.data")
     >
     > GBSG2tree <- ctree(Surv(time, cens) ~ ., data = GBSG2)
     Error in rowSums(is.na(s)) :
     'x' must be an array of at least two dimensions
     Calls: ctree ... lapply -> FUN -> logrank_trafo -> complete.cases -> rowSums
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0-25
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: coin
    Loading required package: survival
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'party.tex' failed.
    LaTeX errors:
    ! Undefined control sequence.
    l.18 !8<e7>hV*<95>p]<ad>V?<ff><fc><f3><f9><f9><f9>R<a9><84>^^A<a5>^^X<ed>v<fb><f2><e5><cb>B^^H!D<b9>\<fe>
     <f2><cb>/?<f9><e4><93>J<a5>r<e3><c6>
    The control sequence at the end of the top line
    of your error message was never \def'ed. If you have
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Extra }, or forgotten \endgroup.
    l.19 ...^Uc,^^H^^B<c3>0<a0><<e7><e6><e6>*<95><ca><f8><f8><f8>G^^_}<d4>^^Oϧ|<ef><8d>}<f6><d9>g}
     6<c5><fb>^^SB<f8><be><df>n<b7><a1>֛<cd>f*<95><8a><e3>xcc<a3><db>...
    I've deleted a group-closing symbol because it seems to be
    spurious, as in `$x}$'. But perhaps the } is legitimate and
    ! Missing $ inserted.
    <inserted text>
    
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks