CRAN Package Check Results for Package pcalg

Last updated on 2017-04-27 23:50:07.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.4-5 56.58 202.99 259.57 OK
r-devel-linux-x86_64-debian-gcc 2.4-5 59.02 198.75 257.77 OK
r-devel-linux-x86_64-fedora-clang 2.4-5 555.91 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 2.4-5 509.53 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 2.4-5 140.00 704.00 844.00 WARN
r-patched-linux-x86_64 2.4-5 51.32 200.68 252.00 OK
r-patched-solaris-sparc 2.4-5 3046.80 ERROR
r-patched-solaris-x86 2.4-5 587.10 NOTE
r-release-linux-x86_64 2.4-5 51.52 196.93 248.45 OK
r-release-windows-ix86+x86_64 2.4-5 138.00 554.00 692.00 NOTE
r-release-osx-x86_64 2.4-5 ERROR
r-oldrel-windows-ix86+x86_64 2.4-5 206.00 505.00 711.00 NOTE
r-oldrel-osx-x86_64 2.4-5 NOTE

Check Details

Version: 2.4-5
Flags: --no-stop-on-test-error
Check: installed package size
Result: NOTE
     installed size is 12.5Mb
     sub-directories of 1Mb or more:
     R 2.5Mb
     data 2.1Mb
     libs 5.8Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.4-5
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     d:/RCompile/CRANpkg/lib/3.5/BH/include/boost/unordered/detail/buckets.hpp:586:29: warning: ISO C++ 1998 does not support 'long long' [-Wlong-long]
     d:/RCompile/CRANpkg/lib/3.5/BH/include/boost/unordered/detail/buckets.hpp:591:38: warning: ISO C++ 1998 does not support 'long long' [-Wlong-long]
     d:/RCompile/CRANpkg/lib/3.5/BH/include/boost/math/special_functions/detail/bernoulli_details.hpp:128:36: warning: ISO C++ 1998 does not support 'long long' [-Wlong-long]
     d:/RCompile/CRANpkg/lib/3.5/BH/include/boost/math/special_functions/detail/bernoulli_details.hpp:152:9: warning: ISO C++ 1998 does not support 'long long' [-Wlong-long]
Flavor: r-devel-windows-ix86+x86_64

Version: 2.4-5
Check: installed package size
Result: NOTE
     installed size is 8.9Mb
     sub-directories of 1Mb or more:
     R 2.5Mb
     data 2.1Mb
     libs 2.2Mb
Flavors: r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 2.4-5
Check: examples
Result: ERROR
    Running examples in ‘pcalg-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: unifDAG
    > ### Title: Uniform Sampling of Directed Acyclic Graphs (DAG)
    > ### Aliases: unifDAG unifDAG.approx
    > ### Keywords: graphs models
    >
    > ### ** Examples
    >
    > # require("Rgraphviz")
    > set.seed(123)
    > dag1 <- unifDAG(n=10)
    GNU MP: Cannot allocate memory (size=4)
Flavor: r-patched-solaris-sparc

Version: 2.4-5
Check: tests
Result: ERROR
     Running ‘test_LINGAM.R’ [33s/33s]
     Running ‘test_amat2dag.R’ [13s/13s]
     Running ‘test_arges.R’ [15s/15s]
     Running ‘test_backdoor.R’ [59s/61s]
     Comparing ‘test_backdoor.Rout’ to ‘test_backdoor.Rout.save’ ... OK
     Running ‘test_bicscore.R’ [18s/18s]
     Running ‘test_causalEffect.R’ [13s/13s]
     Running ‘test_compareGraphs.R’ [16s/16s]
     Running ‘test_dag2cpdag.R’ [16s/16s]
     Running ‘test_dag2essgraph.R’ [19s/19s]
     Running ‘test_displayAmat.R’ [17s/17s]
     Running ‘test_dsep.R’ [19s/19s]
     Running ‘test_fci.R’ [90s/90s]
     Running ‘test_fciPlus.R’ [53s/59s]
     Running ‘test_gSquareBin.R’ [157s/164s]
     Running ‘test_gSquareDis.R’ [36s/36s]
     Running ‘test_gac.R’ [38s/39s]
     Running ‘test_getNextSet.R’ [13s/13s]
     Running ‘test_gies.R’ [43s/43s]
     Running ‘test_ida.R’ [29s/29s]
     Running ‘test_idaFast.R’ [23s/23s]
     Running ‘test_jointIda.R’ [19s/24s]
     Running ‘test_mat2targets.R’ [17s/17s]
     Running ‘test_pc.R’ [44s/51s]
     Running ‘test_pcSelect.R’ [35s/38s]
     Running ‘test_pcorOrder.R’ [13s/13s]
     Running ‘test_pdag2allDags.R’ [12s/12s]
     Running ‘test_pdag2dag.R’ [15s/15s]
     Running ‘test_randDAG.R’ [32s/32s]
     Comparing ‘test_randDAG.Rout’ to ‘test_randDAG.Rout.save’ ... OK
     Running ‘test_randomDAG.R’ [15s/15s]
     Running ‘test_rfci.R’ [284s/284s]
     Running ‘test_rmvDAG.R’ [16s/16s]
     Running ‘test_shd.R’ [15s/15s]
     Running ‘test_skeleton.R’ [40s/40s]
     Running ‘test_udag2pag.R’ [12s/12s]
     Running ‘test_udag2pdag.R’ [49s/49s]
     Running ‘test_unifDAG.R’ [82s/441s]
    Running the tests in ‘tests/test_unifDAG.R’ failed.
    Complete output:
     > library(pcalg)
     > ## setwd("/sfs/u/kalischm/research/packages/unifDAGs/")
     > ## source("aux_general.R")
     > ## source("unifDAG.R")
     > ## source("unifDAG_approx.R")
     >
     > ## exact
     > set.seed(123)
     > n <- 2
     > reps <- 100
     > res <- matrix(0, reps, 3)
     > for (i in 1:reps) {
     + gAM <- unifDAG(n)
     + wm <- wgtMatrix(gAM)
     + if (wm[1,2] != 0) {
     + res[i,1] <- 1
     + } else {
     + if (wm[2,1] != 0) {
     + res[i,2] <- 1
     + } else {
     + res[i,3] <- 1
     + }
     + }
     + }
     GNU MP: Cannot allocate memory (size=4)
Flavor: r-patched-solaris-sparc

Version: 2.4-5
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘graph’ ‘RBGL’ ‘gmp’
    
    Package suggested but not available for checking: ‘Rgraphviz’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64