CRAN Package Check Results for Package pec

Last updated on 2015-07-30 11:48:46.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.4.4 1.84 33.14 34.98 NOTE
r-devel-linux-x86_64-debian-gcc 2.4.4 1.83 32.52 34.35 NOTE
r-devel-linux-x86_64-fedora-clang 2.4.4 65.91 NOTE
r-devel-linux-x86_64-fedora-gcc 2.4.4 62.96 NOTE
r-devel-osx-x86_64-clang 2.4.4 55.13 NOTE
r-devel-windows-ix86+x86_64 2.4.4 15.00 65.00 80.00 NOTE
r-patched-linux-x86_64 2.4.4 1.76 33.29 35.05 NOTE
r-patched-solaris-sparc 2.4.4 413.60 NOTE
r-patched-solaris-x86 2.4.4 87.30 NOTE
r-release-linux-x86_64 2.4.4 1.90 34.52 36.42 NOTE
r-release-osx-x86_64-mavericks 2.4.4 NOTE
r-release-windows-ix86+x86_64 2.4.4 16.00 71.00 87.00 NOTE
r-oldrel-windows-ix86+x86_64 2.4.4 14.00 90.00 104.00 NOTE

Check Details

Version: 2.4.4
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘crrstep’ ‘lava’ ‘party’ ‘riskRegression’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.4.4
Check: R code for possible problems
Result: NOTE
    ConfInt.Cindex : <anonymous> : <anonymous>: no visible global function
     definition for ‘quantile’
    ConfScoreSurv : <anonymous> : <anonymous>: no visible binding for
     global variable ‘sd’
    R2: no visible binding for global variable ‘time’
    Special : <anonymous>: no visible global function definition for
     ‘lines’
    Special: no visible global function definition for ‘lines’
    baselineHazard.coxph: no visible global function definition for ‘coef’
    calPlot: no visible binding for global variable ‘na.fail’
    calPlot: no visible global function definition for ‘model.frame’
    calPlot: no visible global function definition for ‘model.response’
    calPlot: no visible global function definition for ‘median’
    calPlot: no visible global function definition for ‘reformulate’
    calPlot : <anonymous>: no visible global function definition for
     ‘quantile’
    calPlot : <anonymous>: no visible global function definition for
     ‘reformulate’
    calPlot : <anonymous>: no visible global function definition for
     ‘predict’
    calPlot : <anonymous>: no visible global function definition for
     ‘na.omit’
    calPlot: no visible global function definition for ‘par’
    calPlot: no visible global function definition for ‘title’
    calPlot: no visible global function definition for ‘segments’
    calPlot : <anonymous>: no visible global function definition for
     ‘col2rgb’
    calPlot : <anonymous>: no visible global function definition for
     ‘points’
    cindex: no visible binding for global variable ‘na.fail’
    cindex: no visible global function definition for ‘model.frame’
    cindex: no visible global function definition for ‘model.response’
    cindex: no visible global function definition for ‘terms’
    cindex: no visible global function definition for ‘as.formula’
    cindex: no visible global function definition for ‘update’
    cindex : <anonymous>: no visible binding for global variable ‘median’
    coxboost: no visible global function definition for ‘terms’
    coxboost: no visible global function definition for ‘model.response’
    coxboost: no visible global function definition for ‘model.frame’
    coxboost: no visible global function definition for ‘model.matrix’
    ipcw.aalen: no visible global function definition for ‘update’
    ipcw.aalen: no visible global function definition for ‘na.omit’
    ipcw.cox: no visible global function definition for ‘update’
    ipcw.cox: no visible global function definition for ‘na.omit’
    ipcw.forest: no visible global function definition for ‘update’
    ipcw.forest: no visible global function definition for ‘na.omit’
    ipcw.forest: no visible global function definition for ‘predict’
    ipcw.forest : <anonymous>: no visible global function definition for
     ‘predict’
    ipcw.marginal: no visible global function definition for
     ‘update.formula’
    ipcw.marginal: no visible global function definition for ‘predict’
    ipcw.nonpar: no visible global function definition for ‘predict’
    ipcw.rfsrc: no visible global function definition for ‘update’
    ipcw.rfsrc: no visible global function definition for ‘na.omit’
    marginal.default: no visible global function definition for
     ‘reformulate’
    marginal.formula: no visible global function definition for
     ‘reformulate’
    marginal.prodlim: no visible global function definition for
     ‘reformulate’
    pec: no visible binding for global variable ‘na.fail’
    pec: no visible global function definition for ‘model.frame’
    pec: no visible global function definition for ‘model.response’
    pec: no visible global function definition for ‘as.formula’
    pec: no visible global function definition for ‘update’
    pec: no visible global function definition for ‘terms’
    pec : <anonymous>: no visible binding for global variable ‘median’
    pec : <anonymous>: no visible global function definition for ‘median’
    pecRpart: no visible global function definition for ‘predict’
    pecRpart: no visible global function definition for ‘update’
    penalizedOpt: no visible global function definition for
     ‘update.formula’
    penalizedS3: no visible global function definition for ‘update.formula’
    plot.CiCindex: no visible global function definition for ‘plot’
    plot.confScoreSurv: no visible global function definition for ‘plot’
    plot.confScoreSurv : <anonymous>: no visible global function definition
     for ‘lines’
    plot.confScoreSurv : <anonymous> : <anonymous>: no visible global
     function definition for ‘lines’
    plot.confScoreSurv: no visible binding for global variable ‘smooth’
    plot.confScoreSurv: no visible global function definition for ‘legend’
    plot.pec : <anonymous>: no visible global function definition for
     ‘lines’
    plot.pec: no visible global function definition for ‘abline’
    plot.pec: no visible global function definition for ‘par’
    plotPredictEventProb: no visible global function definition for
     ‘model.frame’
    plotPredictEventProb: no visible binding for global variable ‘na.fail’
    plotPredictEventProb: no visible global function definition for
     ‘model.response’
    plotPredictEventProb : <anonymous>: no visible global function
     definition for ‘col2rgb’
    plotPredictEventProb : <anonymous>: no visible global function
     definition for ‘lines’
    plotPredictEventProb: no visible global function definition for ‘par’
    plotPredictSurvProb: no visible global function definition for
     ‘model.frame’
    plotPredictSurvProb: no visible binding for global variable ‘na.fail’
    plotPredictSurvProb: no visible global function definition for
     ‘model.response’
    plotPredictSurvProb : <anonymous>: no visible global function
     definition for ‘col2rgb’
    plotPredictSurvProb : <anonymous>: no visible global function
     definition for ‘lines’
    plotPredictSurvProb: no visible global function definition for ‘par’
    predict.survfit: no visible global function definition for ‘terms’
    predictEventProb.ARR: no visible global function definition for
     ‘predict’
    predictEventProb.FGR: no visible global function definition for
     ‘predict’
    predictEventProb.coxboost: no visible global function definition for
     ‘model.matrix’
    predictEventProb.coxboost: no visible global function definition for
     ‘terms’
    predictEventProb.coxboost: no visible global function definition for
     ‘model.frame’
    predictEventProb.coxboost: no visible binding for global variable
     ‘na.fail’
    predictEventProb.coxboost: no visible global function definition for
     ‘predict’
    predictEventProb.prodlim: no visible global function definition for
     ‘predict’
    predictEventProb.pseudoForest : <anonymous>: no visible global function
     definition for ‘predict’
    predictEventProb.rfsrc: no visible global function definition for
     ‘predict’
    predictEventProb.riskRegression: no visible global function definition
     for ‘predict’
    predictLifeYearsLost.ARR: no visible global function definition for
     ‘predict’
    predictLifeYearsLost.FGR: no visible global function definition for
     ‘predict’
    predictLifeYearsLost.coxboost: no visible global function definition
     for ‘model.matrix’
    predictLifeYearsLost.coxboost: no visible global function definition
     for ‘terms’
    predictLifeYearsLost.coxboost: no visible global function definition
     for ‘model.frame’
    predictLifeYearsLost.coxboost: no visible global function definition
     for ‘predict’
    predictLifeYearsLost.prodlim: no visible global function definition for
     ‘predict’
    predictLifeYearsLost.rfsrc: no visible global function definition for
     ‘predict’
    predictLifeYearsLost.riskRegression: no visible global function
     definition for ‘predict’
    predictProb.glm: no visible global function definition for ‘family’
    predictProb.glm: no visible global function definition for ‘predict’
    predictProb.glm: no visible global function definition for ‘pnorm’
    predictProb.glm: no visible global function definition for ‘var’
    predictProb.ols: no visible global function definition for ‘family’
    predictProb.ols: no visible global function definition for ‘predict’
    predictProb.ols: no visible global function definition for ‘pnorm’
    predictProb.ols: no visible global function definition for ‘var’
    predictProb.randomForest: no visible global function definition for
     ‘predict’
    predictProb.randomForest: no visible global function definition for
     ‘pnorm’
    predictProb.randomForest: no visible global function definition for
     ‘var’
    predictSurvProb.coxboost: no visible global function definition for
     ‘model.matrix’
    predictSurvProb.coxboost: no visible global function definition for
     ‘terms’
    predictSurvProb.coxboost: no visible global function definition for
     ‘model.frame’
    predictSurvProb.coxboost: no visible binding for global variable
     ‘na.fail’
    predictSurvProb.coxboost: no visible global function definition for
     ‘predict’
    predictSurvProb.coxph.penal: no visible global function definition for
     ‘predict’
    predictSurvProb.pecRpart: no visible global function definition for
     ‘predict’
    predictSurvProb.penfitS3: no visible global function definition for
     ‘predict’
    predictSurvProb.prodlim: no visible global function definition for
     ‘predict’
    predictSurvProb.pseudoForest : <anonymous>: no visible global function
     definition for ‘predict’
    predictSurvProb.rfsrc: no visible global function definition for
     ‘predict’
    predictSurvProb.riskRegression: no visible global function definition
     for ‘predict’
    print.IPCW: no visible global function definition for ‘head’
    pseudoPec: no visible global function definition for ‘model.frame’
    pseudoPec: no visible binding for global variable ‘na.fail’
    pseudoPec: no visible global function definition for ‘model.response’
    pseudoPec: no visible global function definition for ‘reformulate’
    pseudoPec : <anonymous>: no visible binding for global variable
     ‘median’
    pseudoPec : <anonymous>: no visible global function definition for
     ‘median’
    selectCox: no visible global function definition for ‘reformulate’
    selectFGR: no visible global function definition for ‘model.frame’
    selectFGR: no visible global function definition for ‘model.response’
    selectFGR: no visible global function definition for ‘as.formula’
    selectFGR: no visible global function definition for ‘update’
    selectFGR: no visible global function definition for ‘capture.output’
    simCost: no visible global function definition for ‘formula’
    summary.confScoreSurv : <anonymous>: no visible binding for global
     variable ‘quantile’
    summary.pec: no visible global function definition for ‘quantile’
    testResiduals : <anonymous> : <anonymous>: no visible global function
     definition for ‘wilcox.test’
    testResiduals : <anonymous>: no visible global function definition for
     ‘wilcox.test’
    Undefined global functions or variables:
     abline as.formula capture.output coef col2rgb family formula head
     legend lines median model.frame model.matrix model.response na.fail
     na.omit par plot pnorm points predict quantile reformulate sd
     segments smooth terms time title update update.formula var
     wilcox.test
    Consider adding
     importFrom("grDevices", "col2rgb")
     importFrom("graphics", "abline", "legend", "lines", "par", "plot",
     "points", "segments", "title")
     importFrom("stats", "as.formula", "coef", "family", "formula",
     "median", "model.frame", "model.matrix", "model.response",
     "na.fail", "na.omit", "pnorm", "predict", "quantile",
     "reformulate", "sd", "smooth", "terms", "time", "update",
     "update.formula", "var", "wilcox.test")
     importFrom("utils", "capture.output", "head")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.4.4
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'doMC'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64