CRAN Package Check Results for Package pec

Last updated on 2015-06-30 15:47:17.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.4.4 1.69 33.16 34.86 NOTE
r-devel-linux-x86_64-debian-gcc 2.4.4 1.86 33.76 35.62 NOTE
r-devel-linux-x86_64-fedora-clang 2.4.4 63.18 NOTE
r-devel-linux-x86_64-fedora-gcc 2.4.4 59.51 NOTE
r-devel-osx-x86_64-clang 2.4.4 61.94 NOTE
r-devel-windows-ix86+x86_64 2.4.4 13.00 66.00 79.00 NOTE
r-patched-linux-x86_64 2.4.4 1.89 32.42 34.31 NOTE
r-patched-solaris-sparc 2.4.4 414.50 NOTE
r-patched-solaris-x86 2.4.4 83.20 NOTE
r-release-linux-x86_64 2.4.4 1.78 32.79 34.57 NOTE
r-release-osx-x86_64-mavericks 2.4.4 NOTE
r-release-windows-ix86+x86_64 2.4.4 17.00 60.00 77.00 NOTE
r-oldrel-windows-ix86+x86_64 2.4.4 15.00 87.00 102.00 NOTE

Check Details

Version: 2.4.4
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘crrstep’ ‘lava’ ‘party’ ‘riskRegression’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.4.4
Check: R code for possible problems
Result: NOTE
    ConfInt.Cindex : <anonymous> : <anonymous>: no visible global function
     definition for ‘quantile’
    ConfScoreSurv : <anonymous> : <anonymous>: no visible binding for
     global variable ‘sd’
    R2: no visible binding for global variable ‘time’
    Special : <anonymous>: no visible global function definition for
     ‘lines’
    Special: no visible global function definition for ‘lines’
    baselineHazard.coxph: no visible global function definition for ‘coef’
    calPlot: no visible binding for global variable ‘na.fail’
    calPlot: no visible global function definition for ‘model.frame’
    calPlot: no visible global function definition for ‘model.response’
    calPlot: no visible global function definition for ‘median’
    calPlot: no visible global function definition for ‘reformulate’
    calPlot : <anonymous>: no visible global function definition for
     ‘quantile’
    calPlot : <anonymous>: no visible global function definition for
     ‘reformulate’
    calPlot : <anonymous>: no visible global function definition for
     ‘predict’
    calPlot : <anonymous>: no visible global function definition for
     ‘na.omit’
    calPlot: no visible global function definition for ‘par’
    calPlot: no visible global function definition for ‘title’
    calPlot: no visible global function definition for ‘segments’
    calPlot : <anonymous>: no visible global function definition for
     ‘col2rgb’
    calPlot : <anonymous>: no visible global function definition for
     ‘points’
    cindex: no visible binding for global variable ‘na.fail’
    cindex: no visible global function definition for ‘model.frame’
    cindex: no visible global function definition for ‘model.response’
    cindex: no visible global function definition for ‘terms’
    cindex: no visible global function definition for ‘as.formula’
    cindex: no visible global function definition for ‘update’
    cindex : <anonymous>: no visible binding for global variable ‘median’
    coxboost: no visible global function definition for ‘terms’
    coxboost: no visible global function definition for ‘model.response’
    coxboost: no visible global function definition for ‘model.frame’
    coxboost: no visible global function definition for ‘model.matrix’
    ipcw.aalen: no visible global function definition for ‘update’
    ipcw.aalen: no visible global function definition for ‘na.omit’
    ipcw.cox: no visible global function definition for ‘update’
    ipcw.cox: no visible global function definition for ‘na.omit’
    ipcw.forest: no visible global function definition for ‘update’
    ipcw.forest: no visible global function definition for ‘na.omit’
    ipcw.forest: no visible global function definition for ‘predict’
    ipcw.forest : <anonymous>: no visible global function definition for
     ‘predict’
    ipcw.marginal: no visible global function definition for
     ‘update.formula’
    ipcw.marginal: no visible global function definition for ‘predict’
    ipcw.nonpar: no visible global function definition for ‘predict’
    ipcw.rfsrc: no visible global function definition for ‘update’
    ipcw.rfsrc: no visible global function definition for ‘na.omit’
    marginal.default: no visible global function definition for
     ‘reformulate’
    marginal.formula: no visible global function definition for
     ‘reformulate’
    marginal.prodlim: no visible global function definition for
     ‘reformulate’
    pec: no visible binding for global variable ‘na.fail’
    pec: no visible global function definition for ‘model.frame’
    pec: no visible global function definition for ‘model.response’
    pec: no visible global function definition for ‘as.formula’
    pec: no visible global function definition for ‘update’
    pec: no visible global function definition for ‘terms’
    pec : <anonymous>: no visible binding for global variable ‘median’
    pec : <anonymous>: no visible global function definition for ‘median’
    pecRpart: no visible global function definition for ‘predict’
    pecRpart: no visible global function definition for ‘update’
    penalizedOpt: no visible global function definition for
     ‘update.formula’
    penalizedS3: no visible global function definition for ‘update.formula’
    plot.CiCindex: no visible global function definition for ‘plot’
    plot.confScoreSurv: no visible global function definition for ‘plot’
    plot.confScoreSurv : <anonymous>: no visible global function definition
     for ‘lines’
    plot.confScoreSurv : <anonymous> : <anonymous>: no visible global
     function definition for ‘lines’
    plot.confScoreSurv: no visible binding for global variable ‘smooth’
    plot.confScoreSurv: no visible global function definition for ‘legend’
    plot.pec : <anonymous>: no visible global function definition for
     ‘lines’
    plot.pec: no visible global function definition for ‘abline’
    plot.pec: no visible global function definition for ‘par’
    plotPredictEventProb: no visible global function definition for
     ‘model.frame’
    plotPredictEventProb: no visible binding for global variable ‘na.fail’
    plotPredictEventProb: no visible global function definition for
     ‘model.response’
    plotPredictEventProb : <anonymous>: no visible global function
     definition for ‘col2rgb’
    plotPredictEventProb : <anonymous>: no visible global function
     definition for ‘lines’
    plotPredictEventProb: no visible global function definition for ‘par’
    plotPredictSurvProb: no visible global function definition for
     ‘model.frame’
    plotPredictSurvProb: no visible binding for global variable ‘na.fail’
    plotPredictSurvProb: no visible global function definition for
     ‘model.response’
    plotPredictSurvProb : <anonymous>: no visible global function
     definition for ‘col2rgb’
    plotPredictSurvProb : <anonymous>: no visible global function
     definition for ‘lines’
    plotPredictSurvProb: no visible global function definition for ‘par’
    predict.survfit: no visible global function definition for ‘terms’
    predictEventProb.ARR: no visible global function definition for
     ‘predict’
    predictEventProb.FGR: no visible global function definition for
     ‘predict’
    predictEventProb.coxboost: no visible global function definition for
     ‘model.matrix’
    predictEventProb.coxboost: no visible global function definition for
     ‘terms’
    predictEventProb.coxboost: no visible global function definition for
     ‘model.frame’
    predictEventProb.coxboost: no visible binding for global variable
     ‘na.fail’
    predictEventProb.coxboost: no visible global function definition for
     ‘predict’
    predictEventProb.prodlim: no visible global function definition for
     ‘predict’
    predictEventProb.pseudoForest : <anonymous>: no visible global function
     definition for ‘predict’
    predictEventProb.rfsrc: no visible global function definition for
     ‘predict’
    predictEventProb.riskRegression: no visible global function definition
     for ‘predict’
    predictLifeYearsLost.ARR: no visible global function definition for
     ‘predict’
    predictLifeYearsLost.FGR: no visible global function definition for
     ‘predict’
    predictLifeYearsLost.coxboost: no visible global function definition
     for ‘model.matrix’
    predictLifeYearsLost.coxboost: no visible global function definition
     for ‘terms’
    predictLifeYearsLost.coxboost: no visible global function definition
     for ‘model.frame’
    predictLifeYearsLost.coxboost: no visible global function definition
     for ‘predict’
    predictLifeYearsLost.prodlim: no visible global function definition for
     ‘predict’
    predictLifeYearsLost.rfsrc: no visible global function definition for
     ‘predict’
    predictLifeYearsLost.riskRegression: no visible global function
     definition for ‘predict’
    predictProb.glm: no visible global function definition for ‘family’
    predictProb.glm: no visible global function definition for ‘predict’
    predictProb.glm: no visible global function definition for ‘pnorm’
    predictProb.glm: no visible global function definition for ‘var’
    predictProb.ols: no visible global function definition for ‘family’
    predictProb.ols: no visible global function definition for ‘predict’
    predictProb.ols: no visible global function definition for ‘pnorm’
    predictProb.ols: no visible global function definition for ‘var’
    predictProb.randomForest: no visible global function definition for
     ‘predict’
    predictProb.randomForest: no visible global function definition for
     ‘pnorm’
    predictProb.randomForest: no visible global function definition for
     ‘var’
    predictSurvProb.coxboost: no visible global function definition for
     ‘model.matrix’
    predictSurvProb.coxboost: no visible global function definition for
     ‘terms’
    predictSurvProb.coxboost: no visible global function definition for
     ‘model.frame’
    predictSurvProb.coxboost: no visible binding for global variable
     ‘na.fail’
    predictSurvProb.coxboost: no visible global function definition for
     ‘predict’
    predictSurvProb.coxph.penal: no visible global function definition for
     ‘predict’
    predictSurvProb.pecRpart: no visible global function definition for
     ‘predict’
    predictSurvProb.penfitS3: no visible global function definition for
     ‘predict’
    predictSurvProb.prodlim: no visible global function definition for
     ‘predict’
    predictSurvProb.pseudoForest : <anonymous>: no visible global function
     definition for ‘predict’
    predictSurvProb.rfsrc: no visible global function definition for
     ‘predict’
    predictSurvProb.riskRegression: no visible global function definition
     for ‘predict’
    print.IPCW: no visible global function definition for ‘head’
    pseudoPec: no visible global function definition for ‘model.frame’
    pseudoPec: no visible binding for global variable ‘na.fail’
    pseudoPec: no visible global function definition for ‘model.response’
    pseudoPec: no visible global function definition for ‘reformulate’
    pseudoPec : <anonymous>: no visible binding for global variable
     ‘median’
    pseudoPec : <anonymous>: no visible global function definition for
     ‘median’
    selectCox: no visible global function definition for ‘reformulate’
    selectFGR: no visible global function definition for ‘model.frame’
    selectFGR: no visible global function definition for ‘model.response’
    selectFGR: no visible global function definition for ‘as.formula’
    selectFGR: no visible global function definition for ‘update’
    selectFGR: no visible global function definition for ‘capture.output’
    simCost: no visible global function definition for ‘formula’
    summary.confScoreSurv : <anonymous>: no visible binding for global
     variable ‘quantile’
    summary.pec: no visible global function definition for ‘quantile’
    testResiduals : <anonymous> : <anonymous>: no visible global function
     definition for ‘wilcox.test’
    testResiduals : <anonymous>: no visible global function definition for
     ‘wilcox.test’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64

Version: 2.4.4
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'doMC'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64