CRAN Package Check Results for Package pedantics

Last updated on 2017-08-20 13:47:01.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5 5.06 46.77 51.82 NOTE
r-devel-linux-x86_64-debian-gcc 1.5 4.68 45.99 50.66 NOTE
r-devel-linux-x86_64-fedora-clang 1.5 113.36 NOTE
r-devel-linux-x86_64-fedora-gcc 1.5 122.21 NOTE
r-devel-windows-ix86+x86_64 1.5 14.00 106.00 120.00 NOTE
r-patched-linux-x86_64 1.5 4.80 45.99 50.80 NOTE
r-patched-solaris-x86 1.5 148.20 NOTE
r-release-linux-x86_64 1.5 4.43 47.28 51.71 NOTE
r-release-windows-ix86+x86_64 1.5 20.00 105.00 125.00 NOTE
r-release-osx-x86_64 1.5 NOTE
r-oldrel-windows-ix86+x86_64 1.5 13.00 110.00 123.00 NOTE
r-oldrel-osx-x86_64 1.5 NOTE

Additional issues

clang-ASAN clang-UBSAN gcc-UBSAN

Check Details

Version: 1.5
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.5
Check: R code for possible problems
Result: NOTE
    drawPedigree : prune: no visible global function definition for
     ‘na.omit’
    drawPedigree: no visible global function definition for ‘flush.console’
    drawPedigree: no visible global function definition for ‘colours’
    fixPedigree: no visible global function definition for ‘flush.console’
    genomesim : extractA: no visible global function definition for
     ‘is.genotype’
    genomesim : extractA : <anonymous>: no visible global function
     definition for ‘nallele’
    genomesim : mutation: no visible global function definition for
     ‘rbinom’
    genomesim : mutation: no visible global function definition for ‘rnorm’
    genomesim: no visible global function definition for ‘runif’
    genomesim: no visible global function definition for ‘rnorm’
    genomesim : rndAllele: no visible global function definition for
     ‘runif’
    genomesim : Kosambi.c: no visible global function definition for
     ‘uniroot’
    genomesim : segregate: no visible global function definition for
     ‘rbinom’
    genomesim: no visible global function definition for ‘flush.console’
    microsim : randAllele: no visible global function definition for
     ‘runif’
    microsim : assignGenotype: no visible global function definition for
     ‘rbinom’
    microsim: no visible global function definition for ‘runif’
    microsim : rbinfunc: no visible global function definition for ‘rbinom’
    pedStatSummary: no visible global function definition for
     ‘weighted.mean’
    pedigreeStats : prune: no visible global function definition for
     ‘na.omit’
    pedigreeStats: no visible global function definition for
     ‘flush.console’
    pedigreeStats: no visible global function definition for ‘colors’
    pedigreeStats: no visible global function definition for ‘par’
    pedigreeStats: no visible global function definition for ‘plot’
    pedigreeStats: no visible global function definition for ‘lines’
    pedigreeStats: no visible global function definition for ‘mtext’
    pedigreeStats: no visible global function definition for ‘hist’
    pedigreeStats: no visible global function definition for ‘postscript’
    pedigreeStats: no visible global function definition for ‘dev.off’
    pedigreeStats: no visible global function definition for ‘barplot’
    pedigreeStats: no visible global function definition for ‘axis’
    pedigreeStats: no visible global function definition for ‘gray.colors’
    pedigreeStats: no visible global function definition for ‘dev.new’
    phensim: no visible global function definition for ‘flush.console’
    phensim: no visible global function definition for ‘rmvnorm’
    phensim: no visible global function definition for ‘rnorm’
    phensim: no visible global function definition for ‘rbinom’
    phensim : rbinfunc: no visible global function definition for ‘rbinom’
    Undefined global functions or variables:
     axis barplot colors colours dev.new dev.off flush.console gray.colors
     hist is.genotype lines mtext na.omit nallele par plot postscript
     rbinom rmvnorm rnorm runif uniroot weighted.mean
    Consider adding
     importFrom("grDevices", "colors", "colours", "dev.new", "dev.off",
     "gray.colors", "postscript")
     importFrom("graphics", "axis", "barplot", "hist", "lines", "mtext",
     "par", "plot")
     importFrom("stats", "na.omit", "rbinom", "rnorm", "runif", "uniroot",
     "weighted.mean")
     importFrom("utils", "flush.console")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.5
Check: compiled code
Result: NOTE
    File ‘pedantics/libs/pedantics.so’:
     Found ‘rand’, possibly from ‘rand’ (C)
     Object: ‘pedantics.o’
    File ‘pedantics/libs/pedantics.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.5
Check: R code for possible problems
Result: NOTE
    drawPedigree : prune: no visible global function definition for
     'na.omit'
    drawPedigree: no visible global function definition for 'flush.console'
    drawPedigree: no visible global function definition for 'colours'
    fixPedigree: no visible global function definition for 'flush.console'
    genomesim : extractA: no visible global function definition for
     'is.genotype'
    genomesim : extractA : <anonymous>: no visible global function
     definition for 'nallele'
    genomesim : mutation: no visible global function definition for
     'rbinom'
    genomesim : mutation: no visible global function definition for 'rnorm'
    genomesim: no visible global function definition for 'runif'
    genomesim: no visible global function definition for 'rnorm'
    genomesim : rndAllele: no visible global function definition for
     'runif'
    genomesim : Kosambi.c: no visible global function definition for
     'uniroot'
    genomesim : segregate: no visible global function definition for
     'rbinom'
    genomesim: no visible global function definition for 'flush.console'
    microsim : randAllele: no visible global function definition for
     'runif'
    microsim : assignGenotype: no visible global function definition for
     'rbinom'
    microsim: no visible global function definition for 'runif'
    microsim : rbinfunc: no visible global function definition for 'rbinom'
    pedStatSummary: no visible global function definition for
     'weighted.mean'
    pedigreeStats : prune: no visible global function definition for
     'na.omit'
    pedigreeStats: no visible global function definition for
     'flush.console'
    pedigreeStats: no visible global function definition for 'colors'
    pedigreeStats: no visible global function definition for 'par'
    pedigreeStats: no visible global function definition for 'plot'
    pedigreeStats: no visible global function definition for 'lines'
    pedigreeStats: no visible global function definition for 'mtext'
    pedigreeStats: no visible global function definition for 'savePlot'
    pedigreeStats: no visible global function definition for 'hist'
    pedigreeStats: no visible global function definition for 'postscript'
    pedigreeStats: no visible global function definition for 'dev.off'
    pedigreeStats: no visible global function definition for 'barplot'
    pedigreeStats: no visible global function definition for 'axis'
    pedigreeStats: no visible global function definition for 'gray.colors'
    pedigreeStats: no visible global function definition for 'dev.new'
    phensim: no visible global function definition for 'flush.console'
    phensim: no visible global function definition for 'rmvnorm'
    phensim: no visible global function definition for 'rnorm'
    phensim: no visible global function definition for 'rbinom'
    phensim : rbinfunc: no visible global function definition for 'rbinom'
    Undefined global functions or variables:
     axis barplot colors colours dev.new dev.off flush.console gray.colors
     hist is.genotype lines mtext na.omit nallele par plot postscript
     rbinom rmvnorm rnorm runif savePlot uniroot weighted.mean
    Consider adding
     importFrom("grDevices", "colors", "colours", "dev.new", "dev.off",
     "gray.colors", "postscript", "savePlot")
     importFrom("graphics", "axis", "barplot", "hist", "lines", "mtext",
     "par", "plot")
     importFrom("stats", "na.omit", "rbinom", "rnorm", "runif", "uniroot",
     "weighted.mean")
     importFrom("utils", "flush.console")
    to your NAMESPACE file.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5
Check: compiled code
Result: NOTE
    File 'pedantics/libs/i386/pedantics.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'pedantics.o'
    File 'pedantics/libs/x64/pedantics.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'pedantics.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5
Check: compiled code
Result: NOTE
    File ‘pedantics/libs/pedantics.so’:
     Found ‘rand’, possibly from ‘rand’ (C)
     Object: ‘pedantics.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-patched-solaris-x86

Version: 1.5
Check: compiled code
Result: NOTE
    File ‘pedantics/libs/pedantics.so’:
     Found ‘_rand’, possibly from ‘rand’ (C)
     Object: ‘pedantics.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64