CRAN Package Check Results for Package pedantics

Last updated on 2015-09-03 14:48:28.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5 4.15 42.59 46.74 NOTE
r-devel-linux-x86_64-debian-gcc 1.5 4.23 41.89 46.12 NOTE
r-devel-linux-x86_64-fedora-clang 1.5 95.78 NOTE
r-devel-linux-x86_64-fedora-gcc 1.5 90.01 NOTE
r-devel-osx-x86_64-clang 1.5 83.37 NOTE
r-devel-windows-ix86+x86_64 1.5 25.00 140.00 165.00 NOTE
r-patched-linux-x86_64 1.5 4.59 44.12 48.71 NOTE
r-patched-solaris-sparc 1.5 591.60 NOTE
r-patched-solaris-x86 1.5 142.00 NOTE
r-release-linux-x86_64 1.5 4.35 44.16 48.50 NOTE
r-release-osx-x86_64-mavericks 1.5 NOTE
r-release-windows-ix86+x86_64 1.5 20.00 99.00 119.00 NOTE
r-oldrel-windows-ix86+x86_64 1.5 30.00 144.00 174.00 NOTE

Memtest notes: clang-ASAN clang-UBSAN gcc-UBSAN

Check Details

Version: 1.5
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.5
Check: R code for possible problems
Result: NOTE
    drawPedigree : prune: no visible global function definition for
     ‘na.omit’
    drawPedigree: no visible global function definition for ‘flush.console’
    drawPedigree: no visible global function definition for ‘colours’
    fixPedigree: no visible global function definition for ‘flush.console’
    genomesim : extractA: no visible global function definition for
     ‘is.genotype’
    genomesim : extractA : <anonymous>: no visible global function
     definition for ‘nallele’
    genomesim : mutation: no visible global function definition for
     ‘rbinom’
    genomesim : mutation: no visible global function definition for ‘rnorm’
    genomesim: no visible global function definition for ‘runif’
    genomesim: no visible global function definition for ‘rnorm’
    genomesim : rndAllele: no visible global function definition for
     ‘runif’
    genomesim : Kosambi.c: no visible global function definition for
     ‘uniroot’
    genomesim : segregate: no visible global function definition for
     ‘rbinom’
    genomesim: no visible global function definition for ‘flush.console’
    microsim : randAllele: no visible global function definition for
     ‘runif’
    microsim : assignGenotype: no visible global function definition for
     ‘rbinom’
    microsim: no visible global function definition for ‘runif’
    microsim : rbinfunc: no visible global function definition for ‘rbinom’
    pedStatSummary: no visible global function definition for
     ‘weighted.mean’
    pedigreeStats : prune: no visible global function definition for
     ‘na.omit’
    pedigreeStats: no visible global function definition for
     ‘flush.console’
    pedigreeStats: no visible global function definition for ‘colors’
    pedigreeStats: no visible global function definition for ‘par’
    pedigreeStats: no visible global function definition for ‘plot’
    pedigreeStats: no visible global function definition for ‘lines’
    pedigreeStats: no visible global function definition for ‘mtext’
    pedigreeStats: no visible global function definition for ‘hist’
    pedigreeStats: no visible global function definition for ‘postscript’
    pedigreeStats: no visible global function definition for ‘dev.off’
    pedigreeStats: no visible global function definition for ‘barplot’
    pedigreeStats: no visible global function definition for ‘axis’
    pedigreeStats: no visible global function definition for ‘gray.colors’
    pedigreeStats: no visible global function definition for ‘dev.new’
    phensim: no visible global function definition for ‘flush.console’
    phensim: no visible global function definition for ‘rmvnorm’
    phensim: no visible global function definition for ‘rnorm’
    phensim: no visible global function definition for ‘rbinom’
    phensim : rbinfunc: no visible global function definition for ‘rbinom’
    Undefined global functions or variables:
     axis barplot colors colours dev.new dev.off flush.console gray.colors
     hist is.genotype lines mtext na.omit nallele par plot postscript
     rbinom rmvnorm rnorm runif uniroot weighted.mean
    Consider adding
     importFrom("grDevices", "colors", "colours", "dev.new", "dev.off",
     "gray.colors", "postscript")
     importFrom("graphics", "axis", "barplot", "hist", "lines", "mtext",
     "par", "plot")
     importFrom("stats", "na.omit", "rbinom", "rnorm", "runif", "uniroot",
     "weighted.mean")
     importFrom("utils", "flush.console")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.5
Check: compiled code
Result: NOTE
    File ‘pedantics/libs/pedantics.so’:
     Found ‘rand’, possibly from ‘rand’ (C)
     Object: ‘pedantics.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.5
Check: R code for possible problems
Result: NOTE
    genomesim : extractA: no visible global function definition for
     ‘is.genotype’
    genomesim : extractA : <anonymous>: no visible global function
     definition for ‘nallele’
    phensim: no visible global function definition for ‘rmvnorm’
    Undefined global functions or variables:
     is.genotype nallele rmvnorm
Flavor: r-devel-osx-x86_64-clang

Version: 1.5
Check: compiled code
Result: NOTE
    File ‘pedantics/libs/pedantics.so’:
     Found ‘_rand’, possibly from ‘rand’ (C)
     Object: ‘pedantics.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks

Version: 1.5
Check: R code for possible problems
Result: NOTE
    drawPedigree : prune: no visible global function definition for
     'na.omit'
    drawPedigree: no visible global function definition for 'flush.console'
    drawPedigree: no visible global function definition for 'colours'
    fixPedigree: no visible global function definition for 'flush.console'
    genomesim : extractA: no visible global function definition for
     'is.genotype'
    genomesim : extractA : <anonymous>: no visible global function
     definition for 'nallele'
    genomesim : mutation: no visible global function definition for
     'rbinom'
    genomesim : mutation: no visible global function definition for 'rnorm'
    genomesim: no visible global function definition for 'runif'
    genomesim: no visible global function definition for 'rnorm'
    genomesim : rndAllele: no visible global function definition for
     'runif'
    genomesim : Kosambi.c: no visible global function definition for
     'uniroot'
    genomesim : segregate: no visible global function definition for
     'rbinom'
    genomesim: no visible global function definition for 'flush.console'
    microsim : randAllele: no visible global function definition for
     'runif'
    microsim : assignGenotype: no visible global function definition for
     'rbinom'
    microsim: no visible global function definition for 'runif'
    microsim : rbinfunc: no visible global function definition for 'rbinom'
    pedStatSummary: no visible global function definition for
     'weighted.mean'
    pedigreeStats : prune: no visible global function definition for
     'na.omit'
    pedigreeStats: no visible global function definition for
     'flush.console'
    pedigreeStats: no visible global function definition for 'colors'
    pedigreeStats: no visible global function definition for 'par'
    pedigreeStats: no visible global function definition for 'plot'
    pedigreeStats: no visible global function definition for 'lines'
    pedigreeStats: no visible global function definition for 'mtext'
    pedigreeStats: no visible global function definition for 'savePlot'
    pedigreeStats: no visible global function definition for 'hist'
    pedigreeStats: no visible global function definition for 'postscript'
    pedigreeStats: no visible global function definition for 'dev.off'
    pedigreeStats: no visible global function definition for 'barplot'
    pedigreeStats: no visible global function definition for 'axis'
    pedigreeStats: no visible global function definition for 'gray.colors'
    pedigreeStats: no visible global function definition for 'dev.new'
    phensim: no visible global function definition for 'flush.console'
    phensim: no visible global function definition for 'rmvnorm'
    phensim: no visible global function definition for 'rnorm'
    phensim: no visible global function definition for 'rbinom'
    phensim : rbinfunc: no visible global function definition for 'rbinom'
    Undefined global functions or variables:
     axis barplot colors colours dev.new dev.off flush.console gray.colors
     hist is.genotype lines mtext na.omit nallele par plot postscript
     rbinom rmvnorm rnorm runif savePlot uniroot weighted.mean
    Consider adding
     importFrom("grDevices", "colors", "colours", "dev.new", "dev.off",
     "gray.colors", "postscript", "savePlot")
     importFrom("graphics", "axis", "barplot", "hist", "lines", "mtext",
     "par", "plot")
     importFrom("stats", "na.omit", "rbinom", "rnorm", "runif", "uniroot",
     "weighted.mean")
     importFrom("utils", "flush.console")
    to your NAMESPACE.
Flavor: r-devel-windows-ix86+x86_64

Version: 1.5
Check: compiled code
Result: NOTE
    File 'pedantics/libs/i386/pedantics.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'pedantics.o'
    File 'pedantics/libs/x64/pedantics.dll':
     Found 'rand', possibly from 'rand' (C)
     Object: 'pedantics.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5
Check: R code for possible problems
Result: NOTE
    genomesim : extractA: no visible global function definition for
     ‘is.genotype’
    genomesim : extractA : <anonymous>: no visible global function
     definition for ‘nallele’
    phensim: no visible global function definition for ‘rmvnorm’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5
Check: installed package size
Result: NOTE
     installed size is 27.1Mb
     sub-directories of 1Mb or more:
     libs 26.4Mb
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86