CRAN Package Check Results for Package penalized

Last updated on 2014-10-25 21:46:34.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9-42 1.17 94.44 95.60 NOTE
r-devel-linux-x86_64-debian-gcc 0.9-42 1.37 90.95 92.32 NOTE
r-devel-linux-x86_64-fedora-clang 0.9-42 197.24 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9-42 187.38 NOTE
r-devel-osx-x86_64-clang 0.9-42 152.99 NOTE
r-devel-windows-ix86+x86_64 0.9-42 4.00 126.00 130.00 NOTE
r-patched-linux-x86_64 0.9-42 1.26 100.10 101.36 NOTE
r-patched-solaris-sparc 0.9-42 1105.00 NOTE
r-patched-solaris-x86 0.9-42 231.20 NOTE
r-release-linux-ix86 0.9-42 1.58 112.03 113.61 NOTE
r-release-linux-x86_64 0.9-42 1.19 96.72 97.91 NOTE
r-release-osx-x86_64-mavericks 0.9-42 WARN
r-release-windows-ix86+x86_64 0.9-42 5.00 130.00 135.00 NOTE
r-oldrel-windows-ix86+x86_64 0.9-42 3.00 205.00 208.00 NOTE

Check Details

Version: 0.9-42
Check: DESCRIPTION meta-information
Result: NOTE
    Package listed in more than one of Depends, Imports, Suggests, Enhances:
     ‘survival’
    A package should be listed in only one of these fields.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9-42
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘changelog.txt’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.9-42
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9-42
Check: Rd line widths
Result: NOTE
    Rd file 'cvl.Rd':
     \usage lines wider than 90 characters:
     fusedl = FALSE, positive = FALSE, data, model = c("cox", "logistic", "linear", "poisson"),
     fusedl = FALSE,positive = FALSE, data, model = c("cox", "logistic", "linear", "poisson"),
     fusedl = FALSE,positive = FALSE, data, model = c("cox", "logistic", "linear", "poisson"),
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.9-42
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘globaltest’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9-42
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘penalized.Rnw’
     ...
    # nonzero coefficients: 11
    # nonzero coefficients: 11
    # nonzero coefficients: 11
    
    
    > library(globaltest)
    
     When sourcing ‘penalized.R’:
    Error: there is no package called ‘globaltest’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9-42
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: survival
    Loading required package: splines
    Welcome to penalized. For extended examples, see vignette("penalized").
    
    Error: processing vignette 'penalized.Rnw' failed with diagnostics:
     chunk 31 (label = globaltest)
    Error in library(globaltest) : there is no package called ‘globaltest’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks