CRAN Package Check Results for Package penalized

Last updated on 2015-07-02 19:47:25.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9-45 1.06 64.32 65.38 NOTE
r-devel-linux-x86_64-debian-gcc 0.9-45 0.96 64.57 65.53 NOTE
r-devel-linux-x86_64-fedora-clang 0.9-45 125.25 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9-45 121.69 NOTE
r-devel-osx-x86_64-clang 0.9-45 115.90 OK
r-devel-windows-ix86+x86_64 0.9-45 7.00 124.00 131.00 OK
r-patched-linux-x86_64 0.9-45 0.93 63.18 64.12 OK
r-patched-solaris-sparc 0.9-45 781.40 OK
r-patched-solaris-x86 0.9-45 173.00 OK
r-release-linux-x86_64 0.9-45 1.01 65.35 66.36 OK
r-release-osx-x86_64-mavericks 0.9-45 WARN
r-release-windows-ix86+x86_64 0.9-45 4.00 100.00 104.00 OK
r-oldrel-windows-ix86+x86_64 0.9-45 4.00 126.00 130.00 OK

Check Details

Version: 0.9-45
Check: R code for possible problems
Result: NOTE
    .checkinput: no visible global function definition for ‘terms’
    .checkinput: no visible global function definition for ‘model.offset’
    .checkinput: no visible global function definition for ‘model.frame’
    .checkinput: no visible global function definition for ‘model.matrix’
    .checkinput: no visible global function definition for ‘glm’
    .checkinput: no visible binding for global variable ‘binomial’
    .checkinput: no visible global function definition for ‘lm’
    .checkinput: no visible binding for global variable ‘poisson’
    .checkinput: no visible binding for global variable ‘var’
    .cvl : <anonymous>: no visible global function definition for
     ‘flush.console’
    .lasso: no visible global function definition for ‘flush.console’
    .ridge: no visible global function definition for ‘flush.console’
    contr.none: no visible global function definition for ‘contr.treatment’
    optL1 : thiscvl: no visible global function definition for
     ‘flush.console’
    optL2 : thiscvl: no visible global function definition for
     ‘flush.console’
    plotpath: no visible global function definition for ‘strwidth’
    plotpath: no visible global function definition for ‘par’
    plotpath: no visible global function definition for ‘matplot’
    plotpath: no visible global function definition for ‘rainbow’
    plotpath: no visible global function definition for ‘axis’
    profL1: no visible global function definition for ‘flush.console’
    profL2: no visible global function definition for ‘flush.console’
    Undefined global functions or variables:
     axis binomial contr.treatment flush.console glm lm matplot
     model.frame model.matrix model.offset par poisson rainbow strwidth
     terms var
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.9-45
Check: R code for possible problems
Result: NOTE
    .checkinput: no visible global function definition for ‘terms’
    .checkinput: no visible global function definition for ‘model.offset’
    .checkinput: no visible global function definition for ‘model.frame’
    .checkinput: no visible global function definition for ‘model.matrix’
    .checkinput: no visible global function definition for ‘glm’
    .checkinput: no visible binding for global variable ‘binomial’
    .checkinput: no visible global function definition for ‘lm’
    .checkinput: no visible binding for global variable ‘poisson’
    .checkinput: no visible binding for global variable ‘var’
    .cvl : <anonymous>: no visible global function definition for
     ‘flush.console’
    .lasso: no visible global function definition for ‘flush.console’
    .ridge: no visible global function definition for ‘flush.console’
    contr.none: no visible global function definition for ‘contr.treatment’
    optL1 : thiscvl: no visible global function definition for
     ‘flush.console’
    optL2 : thiscvl: no visible global function definition for
     ‘flush.console’
    plotpath: no visible global function definition for ‘strwidth’
    plotpath: no visible global function definition for ‘par’
    plotpath: no visible global function definition for ‘matplot’
    plotpath: no visible global function definition for ‘rainbow’
    plotpath: no visible global function definition for ‘axis’
    profL1: no visible global function definition for ‘flush.console’
    profL2: no visible global function definition for ‘flush.console’
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.9-45
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘penalized.Rnw’
     ...
    + fusedl = chr)
    
    
    > library(globaltest)
    Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
     there is no package called ‘annotate’
    
     When sourcing ‘penalized.R’:
    Error: package or namespace load failed for ‘globaltest’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9-45
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: survival
    Welcome to penalized. For extended examples, see vignette("penalized").
    Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
     there is no package called ‘annotate’
    
    Error: processing vignette 'penalized.Rnw' failed with diagnostics:
     chunk 31 (label = globaltest)
    Error : package or namespace load failed for ‘globaltest’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks