CRAN Package Check Results for Package penalized

Last updated on 2014-04-25 05:47:21.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9-42 1.27 95.30 96.57 NOTE
r-devel-linux-x86_64-debian-gcc 0.9-42 1.28 95.29 96.56 NOTE
r-devel-linux-x86_64-fedora-clang 0.9-42 205.71 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9-42 200.55 NOTE
r-devel-osx-x86_64-clang 0.9-42 156.22 NOTE
r-devel-osx-x86_64-gcc 0.9-42 WARN
r-devel-windows-ix86+x86_64 0.9-42 4.00 135.00 139.00 NOTE
r-patched-linux-x86_64 0.9-42 1.22 95.34 96.57 NOTE
r-patched-solaris-sparc 0.9-42 1081.00 NOTE
r-patched-solaris-x86 0.9-42 237.30 NOTE
r-release-linux-ix86 0.9-42 2.00 134.00 136.00 NOTE
r-release-linux-x86_64 0.9-42 1.20 94.35 95.56 NOTE
r-release-osx-x86_64-mavericks 0.9-42 WARN
r-release-windows-ix86+x86_64 0.9-42 6.00 178.00 184.00 NOTE
r-oldrel-windows-ix86+x86_64 0.9-42 3.00 205.00 208.00 NOTE

Check Details

Version: 0.9-42
Check: DESCRIPTION meta-information
Result: NOTE
    Package listed in more than one of Depends, Imports, Suggests, Enhances:
     ‘survival’
    A package should be listed in only one of these fields.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9-42
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9-42
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘changelog.txt’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.9-42
Check: Rd line widths
Result: NOTE
    Rd file 'cvl.Rd':
     \usage lines wider than 90 characters:
     fusedl = FALSE, positive = FALSE, data, model = c("cox", "logistic", "linear", "poisson"),
     fusedl = FALSE,positive = FALSE, data, model = c("cox", "logistic", "linear", "poisson"),
     fusedl = FALSE,positive = FALSE, data, model = c("cox", "logistic", "linear", "poisson"),
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.9-42
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘globaltest’
Flavors: r-devel-osx-x86_64-gcc, r-release-osx-x86_64-mavericks

Version: 0.9-42
Check: running R code from vignettes
Result: WARNING
    Errors in running code in vignettes:
    when running code in ‘penalized.Rnw’
     ...
    # nonzero coefficients: 11
    # nonzero coefficients: 11
    # nonzero coefficients: 11
    
    
    > library(globaltest)
    
     When sourcing ‘penalized.R’:
    Error: there is no package called ‘globaltest’
    Execution halted
Flavors: r-devel-osx-x86_64-gcc, r-release-osx-x86_64-mavericks

Version: 0.9-42
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: survival
    Loading required package: splines
    Welcome to penalized. For extended examples, see vignette("penalized").
    
    Error: processing vignette 'penalized.Rnw' failed with diagnostics:
     chunk 31 (label = globaltest)
    Error in library(globaltest) : there is no package called ‘globaltest’
    Execution halted
Flavors: r-devel-osx-x86_64-gcc, r-release-osx-x86_64-mavericks

Version: 0.9-42
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    1f97d6bd/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks