CRAN Package Check Results for Package penalizedLDA

Last updated on 2015-07-05 22:47:38.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 0.52 9.85 10.37 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 0.62 9.85 10.47 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 19.38 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 18.59 NOTE
r-devel-osx-x86_64-clang 1.0 21.27 NOTE
r-devel-windows-ix86+x86_64 1.0 3.00 18.00 21.00 NOTE
r-patched-linux-x86_64 1.0 0.55 10.47 11.02 NOTE
r-patched-solaris-sparc 1.0 120.00 NOTE
r-patched-solaris-x86 1.0 31.30 NOTE
r-release-linux-x86_64 1.0 0.55 11.05 11.60 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 3.00 19.00 22.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 4.00 30.00 34.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘flsa’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.penlda plot.penldacv predict.penlda print.penlda print.penldacv
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    PenalizedLDA.cv: no visible binding for global variable ‘sd’
    PenalizedPCA: no visible global function definition for ‘flsa’
    permute.rows: no visible global function definition for ‘runif’
    plot.penlda: no visible global function definition for ‘par’
    plot.penlda: no visible global function definition for ‘plot’
    plot.penldacv: no visible global function definition for ‘plot’
    plot.penldacv: no visible global function definition for ‘points’
    plot.penldacv: no visible global function definition for ‘legend’
    print.penldacv: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     flsa legend par plot points runif sd write.table
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'PenalizedLDA.cv.Rd':
     \usage lines wider than 90 characters:
     PenalizedLDA.cv(x, y, lambdas = NULL, K = NULL, nfold = 6, folds = NULL, type = "standard", chrom = NULL, lambda2 = NULL)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'penalizedLDA-internal':
     ‘plot.penlda’ ‘print.penlda’ ‘plot.penldacv’ ‘print.penldacv’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    PenalizedPCA: no visible global function definition for ‘flsa’
    Undefined global functions or variables:
     flsa
Flavor: r-devel-osx-x86_64-clang

Version: 1.0
Check: R code for possible problems
Result: NOTE
    PenalizedPCA: no visible global function definition for ‘flsa’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64