CRAN Package Check Results for Package peperr

Last updated on 2015-09-05 11:47:24.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-7 1.03 14.08 15.10 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-7 1.06 14.86 15.93 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-7 28.57 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-7 26.77 NOTE
r-devel-osx-x86_64-clang 1.1-7 29.47 NOTE
r-devel-windows-ix86+x86_64 1.1-7 9.00 33.00 42.00 NOTE
r-patched-linux-x86_64 1.1-7 1.14 15.51 16.65 NOTE
r-patched-solaris-sparc 1.1-7 185.50 NOTE
r-patched-solaris-x86 1.1-7 43.50 NOTE
r-release-linux-x86_64 1.1-7 1.37 14.64 16.01 NOTE
r-release-osx-x86_64-mavericks 1.1-7 NOTE
r-release-windows-ix86+x86_64 1.1-7 9.00 47.00 56.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1-7 10.00 40.00 50.00 NOTE

Check Details

Version: 1.1-7
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘changeLog’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1-7
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘survival’ which was already attached by Depends.
     Please remove these calls from your code.
    'library' or 'require' calls in package code:
     ‘CoxBoost’ ‘codetools’ ‘locfit’ ‘penalized’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-7
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     PLL.CoxBoost PLL.coxph predictProb.CoxBoost predictProb.coxph
     predictProb.survfit
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.1-7
Check: R code for possible problems
Result: NOTE
    PLL.CoxBoost: no visible global function definition for ‘predict’
    aggregation.brier: no visible global function definition for ‘predict’
    aggregation.misclass: no visible global function definition for
     ‘predict’
    aggregation.pmpec: no visible global function definition for ‘quantile’
    complexity.LASSO: no visible global function definition for ‘profL1’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘CoxBoost’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘locfit’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘predict’
    complexity.mincv.CoxBoost: no visible global function definition for
     ‘cv.CoxBoost’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘CoxBoost’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘locfit’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘predict’
    extract: no visible global function definition for ‘findGlobals’
    fit.CoxBoost: no visible global function definition for ‘CoxBoost’
    fit.LASSO: no visible global function definition for ‘penalized’
    peperr: no visible global function definition for ‘glm’
    peperr: no visible global function definition for ‘binomial’
    peperr : sample.fun: no visible global function definition for ‘glm’
    peperr : sample.fun: no visible global function definition for
     ‘binomial’
    plot.peperr: no visible global function definition for ‘plot’
    plot.peperr: no visible global function definition for ‘lines’
    plot.peperr: no visible global function definition for ‘legend’
    plot.peperr: no visible global function definition for ‘hist’
    plot.peperr: no visible global function definition for ‘smooth.spline’
    plot.peperr: no visible global function definition for ‘boxplot’
    plot.peperr: no visible global function definition for ‘points’
    predictProb.CoxBoost: no visible global function definition for
     ‘predict’
    predictProb.coxph: no visible global function definition for
     ‘getFromNamespace’
    predictProb2.CoxBoost: no visible global function definition for
     ‘predict’
    Undefined global functions or variables:
     CoxBoost binomial boxplot cv.CoxBoost findGlobals getFromNamespace
     glm hist legend lines locfit penalized plot points predict profL1
     quantile smooth.spline
    Consider adding
     importFrom("graphics", "boxplot", "hist", "legend", "lines", "plot",
     "points")
     importFrom("stats", "binomial", "glm", "predict", "quantile",
     "smooth.spline")
     importFrom("utils", "getFromNamespace")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1-7
Check: Rd line widths
Result: NOTE
    Rd file 'aggregation.brier.Rd':
     \usage lines wider than 90 characters:
     aggregation.brier(full.data=NULL, response, x, model, cplx=NULL, type=c("apparent", "noinf"),
    
    Rd file 'aggregation.misclass.Rd':
     \usage lines wider than 90 characters:
     aggregation.misclass(full.data=NULL, response, x, model, cplx=NULL, type=c("apparent", "noinf"),
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1-7
Check: R code for possible problems
Result: NOTE
    complexity.LASSO: no visible global function definition for ‘profL1’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘CoxBoost’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘locfit’
    complexity.mincv.CoxBoost: no visible global function definition for
     ‘cv.CoxBoost’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘CoxBoost’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘locfit’
    extract: no visible global function definition for ‘findGlobals’
    fit.CoxBoost: no visible global function definition for ‘CoxBoost’
    fit.LASSO: no visible global function definition for ‘penalized’
    Undefined global functions or variables:
     CoxBoost cv.CoxBoost findGlobals locfit penalized profL1
Flavor: r-devel-osx-x86_64-clang

Version: 1.1-7
Check: R code for possible problems
Result: NOTE
    complexity.LASSO: no visible global function definition for ‘profL1’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘CoxBoost’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘locfit’
    complexity.mincv.CoxBoost: no visible global function definition for
     ‘cv.CoxBoost’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘CoxBoost’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘locfit’
    extract: no visible global function definition for ‘findGlobals’
    fit.CoxBoost: no visible global function definition for ‘CoxBoost’
    fit.LASSO: no visible global function definition for ‘penalized’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64