CRAN Package Check Results for Package peperr

Last updated on 2015-07-04 03:48:20.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-7 1.03 14.16 15.18 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-7 1.08 14.08 15.17 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-7 28.20 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-7 26.62 NOTE
r-devel-osx-x86_64-clang 1.1-7 28.35 NOTE
r-devel-windows-ix86+x86_64 1.1-7 13.00 31.00 44.00 NOTE
r-patched-linux-x86_64 1.1-7 1.02 14.62 15.65 NOTE
r-patched-solaris-sparc 1.1-7 164.60 NOTE
r-patched-solaris-x86 1.1-7 44.10 NOTE
r-release-linux-x86_64 1.1-7 1.35 14.50 15.86 NOTE
r-release-osx-x86_64-mavericks 1.1-7 NOTE
r-release-windows-ix86+x86_64 1.1-7 11.00 29.00 40.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1-7 8.00 35.00 43.00 NOTE

Check Details

Version: 1.1-7
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘changeLog’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1-7
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘survival’ which was already attached by Depends.
     Please remove these calls from your code.
    'library' or 'require' calls in package code:
     ‘CoxBoost’ ‘codetools’ ‘locfit’ ‘penalized’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-7
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     PLL.CoxBoost PLL.coxph predictProb.CoxBoost predictProb.coxph
     predictProb.survfit
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.1-7
Check: R code for possible problems
Result: NOTE
    PLL.CoxBoost: no visible global function definition for ‘predict’
    aggregation.brier: no visible global function definition for ‘predict’
    aggregation.misclass: no visible global function definition for
     ‘predict’
    aggregation.pmpec: no visible global function definition for ‘quantile’
    complexity.LASSO: no visible global function definition for ‘profL1’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘CoxBoost’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘locfit’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘predict’
    complexity.mincv.CoxBoost: no visible global function definition for
     ‘cv.CoxBoost’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘CoxBoost’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘locfit’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘predict’
    extract: no visible global function definition for ‘findGlobals’
    fit.CoxBoost: no visible global function definition for ‘CoxBoost’
    fit.LASSO: no visible global function definition for ‘penalized’
    peperr: no visible global function definition for ‘glm’
    peperr: Error while checking: invalid ‘envir’ argument
    plot.peperr: no visible global function definition for ‘plot’
    plot.peperr: no visible global function definition for ‘lines’
    plot.peperr: no visible global function definition for ‘legend’
    plot.peperr: no visible global function definition for ‘hist’
    plot.peperr: no visible global function definition for ‘smooth.spline’
    plot.peperr: no visible global function definition for ‘boxplot’
    plot.peperr: no visible global function definition for ‘points’
    predictProb.CoxBoost: no visible global function definition for
     ‘predict’
    predictProb.coxph: no visible global function definition for
     ‘getFromNamespace’
    predictProb2.CoxBoost: no visible global function definition for
     ‘predict’
    Undefined global functions or variables:
     CoxBoost boxplot cv.CoxBoost findGlobals getFromNamespace glm hist
     legend lines locfit penalized plot points predict profL1 quantile
     smooth.spline
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1-7
Check: Rd line widths
Result: NOTE
    Rd file 'aggregation.brier.Rd':
     \usage lines wider than 90 characters:
     aggregation.brier(full.data=NULL, response, x, model, cplx=NULL, type=c("apparent", "noinf"),
    
    Rd file 'aggregation.misclass.Rd':
     \usage lines wider than 90 characters:
     aggregation.misclass(full.data=NULL, response, x, model, cplx=NULL, type=c("apparent", "noinf"),
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1-7
Check: R code for possible problems
Result: NOTE
    complexity.LASSO: no visible global function definition for ‘profL1’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘CoxBoost’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘locfit’
    complexity.mincv.CoxBoost: no visible global function definition for
     ‘cv.CoxBoost’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘CoxBoost’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘locfit’
    extract: no visible global function definition for ‘findGlobals’
    fit.CoxBoost: no visible global function definition for ‘CoxBoost’
    fit.LASSO: no visible global function definition for ‘penalized’
    Undefined global functions or variables:
     CoxBoost cv.CoxBoost findGlobals locfit penalized profL1
Flavor: r-devel-osx-x86_64-clang

Version: 1.1-7
Check: R code for possible problems
Result: NOTE
    PLL.CoxBoost: no visible global function definition for 'predict'
    aggregation.brier: no visible global function definition for 'predict'
    aggregation.misclass: no visible global function definition for
     'predict'
    aggregation.pmpec: no visible global function definition for 'quantile'
    complexity.LASSO: no visible global function definition for 'profL1'
    complexity.ipec.CoxBoost: no visible global function definition for
     'CoxBoost'
    complexity.ipec.CoxBoost: no visible global function definition for
     'locfit'
    complexity.ipec.CoxBoost: no visible global function definition for
     'predict'
    complexity.mincv.CoxBoost: no visible global function definition for
     'cv.CoxBoost'
    complexity.ripec.CoxBoost: no visible global function definition for
     'CoxBoost'
    complexity.ripec.CoxBoost: no visible global function definition for
     'locfit'
    complexity.ripec.CoxBoost: no visible global function definition for
     'predict'
    extract: no visible global function definition for 'findGlobals'
    fit.CoxBoost: no visible global function definition for 'CoxBoost'
    fit.LASSO: no visible global function definition for 'penalized'
    peperr: no visible global function definition for 'glm'
    peperr: no visible global function definition for 'binomial'
    peperr : sample.fun: no visible global function definition for 'glm'
    peperr : sample.fun: no visible global function definition for
     'binomial'
    plot.peperr: no visible global function definition for 'plot'
    plot.peperr: no visible global function definition for 'lines'
    plot.peperr: no visible global function definition for 'legend'
    plot.peperr: no visible global function definition for 'hist'
    plot.peperr: no visible global function definition for 'smooth.spline'
    plot.peperr: no visible global function definition for 'boxplot'
    plot.peperr: no visible global function definition for 'points'
    predictProb.CoxBoost: no visible global function definition for
     'predict'
    predictProb.coxph: no visible global function definition for
     'getFromNamespace'
    predictProb2.CoxBoost: no visible global function definition for
     'predict'
    Undefined global functions or variables:
     CoxBoost binomial boxplot cv.CoxBoost findGlobals getFromNamespace
     glm hist legend lines locfit penalized plot points predict profL1
     quantile smooth.spline
Flavor: r-devel-windows-ix86+x86_64

Version: 1.1-7
Check: R code for possible problems
Result: NOTE
    complexity.LASSO: no visible global function definition for ‘profL1’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘CoxBoost’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘locfit’
    complexity.mincv.CoxBoost: no visible global function definition for
     ‘cv.CoxBoost’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘CoxBoost’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘locfit’
    extract: no visible global function definition for ‘findGlobals’
    fit.CoxBoost: no visible global function definition for ‘CoxBoost’
    fit.LASSO: no visible global function definition for ‘penalized’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64