CRAN Package Check Results for Package peperr

Last updated on 2015-01-30 17:52:00.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-7 1.18 14.38 15.57 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-7 1.07 14.86 15.93 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-7 32.00 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-7 30.95 NOTE
r-devel-osx-x86_64-clang 1.1-7 35.64 NOTE
r-devel-windows-ix86+x86_64 1.1-7 9.00 26.00 35.00 NOTE
r-patched-linux-x86_64 1.1-7 1.17 16.19 17.36 NOTE
r-patched-solaris-sparc 1.1-7 204.30 NOTE
r-patched-solaris-x86 1.1-7 45.20 NOTE
r-release-linux-ix86 1.1-7 1.63 21.92 23.55 NOTE
r-release-linux-x86_64 1.1-7 1.24 16.14 17.38 NOTE
r-release-osx-x86_64-mavericks 1.1-7 NOTE
r-release-windows-ix86+x86_64 1.1-7 7.00 37.00 44.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1-7 7.00 63.00 70.00 NOTE

Check Details

Version: 1.1-7
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘changeLog’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1-7
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘survival’ which was already attached by Depends.
     Please remove these calls from your code.
    'library' or 'require' calls in package code:
     ‘CoxBoost’ ‘codetools’ ‘locfit’ ‘penalized’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.1-7
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     PLL.CoxBoost PLL.coxph predictProb.CoxBoost predictProb.coxph
     predictProb.survfit
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.1-7
Check: R code for possible problems
Result: NOTE
    complexity.LASSO: no visible global function definition for ‘profL1’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘CoxBoost’
    complexity.ipec.CoxBoost: no visible global function definition for
     ‘locfit’
    complexity.mincv.CoxBoost: no visible global function definition for
     ‘cv.CoxBoost’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘CoxBoost’
    complexity.ripec.CoxBoost: no visible global function definition for
     ‘locfit’
    extract: no visible global function definition for ‘findGlobals’
    fit.CoxBoost: no visible global function definition for ‘CoxBoost’
    fit.LASSO: no visible global function definition for ‘penalized’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.1-7
Check: Rd line widths
Result: NOTE
    Rd file 'aggregation.brier.Rd':
     \usage lines wider than 90 characters:
     aggregation.brier(full.data=NULL, response, x, model, cplx=NULL, type=c("apparent", "noinf"),
    
    Rd file 'aggregation.misclass.Rd':
     \usage lines wider than 90 characters:
     aggregation.misclass(full.data=NULL, response, x, model, cplx=NULL, type=c("apparent", "noinf"),
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1-7
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘survival’ which was already attached by Depends.
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64