CRAN Package Check Results for Package phylotools

Last updated on 2015-07-05 08:47:28.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.2 4.35 50.69 55.04 NOTE
r-devel-linux-x86_64-debian-gcc 0.1.2 4.16 49.68 53.84 NOTE
r-devel-linux-x86_64-fedora-clang 0.1.2 111.42 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.2 104.69 NOTE
r-devel-osx-x86_64-clang 0.1.2 93.50 OK
r-devel-windows-ix86+x86_64 0.1.2 13.00 100.00 113.00 NOTE
r-patched-linux-x86_64 0.1.2 4.28 48.07 52.36 NOTE
r-patched-solaris-sparc 0.1.2 659.10 OK
r-patched-solaris-x86 0.1.2 156.40 OK
r-release-linux-x86_64 0.1.2 3.96 48.35 52.30 NOTE
r-release-osx-x86_64-mavericks 0.1.2 OK
r-release-windows-ix86+x86_64 0.1.2 15.00 77.00 92.00 OK
r-oldrel-windows-ix86+x86_64 0.1.2 25.00 105.00 130.00 OK

Check Details

Version: 0.1.2
Check: R code for possible problems
Result: NOTE
    RMPD: no visible global function definition for ‘as.dist’
    RMPD: no visible global function definition for ‘cophenetic’
    imagevect: no visible global function definition for ‘par’
    imagevect: no visible global function definition for ‘points’
    imagevect: no visible global function definition for ‘axis’
    inequality: no visible global function definition for ‘as.hclust’
    inequality: no visible global function definition for ‘cutree’
    meangini: no visible global function definition for ‘as.hclust’
    meangini: no visible global function definition for ‘par’
    meangini: no visible global function definition for ‘axis’
    meangini: no visible global function definition for ‘abline’
    meangini: no visible global function definition for ‘hist’
    phylocom.comdist: no visible global function definition for
     ‘read.table’
    phylocom.comdist: no visible global function definition for ‘as.dist’
    phylocom.comstruct: no visible global function definition for
     ‘read.table’
    phylocom.phylosor: no visible global function definition for
     ‘read.table’
    phylocom.phylosor: no visible global function definition for
     ‘write.table’
    phylocom.phylosor: no visible global function definition for ‘as.dist’
    plotcut: no visible global function definition for ‘plot’
    plotcut: no visible global function definition for ‘axis’
    plotcut: no visible global function definition for ‘as.hclust’
    plotcut: no visible global function definition for ‘abline’
    rh: no visible global function definition for ‘as.hclust’
    rh: no visible global function definition for ‘runif’
    Undefined global functions or variables:
     abline as.dist as.hclust axis cophenetic cutree hist par plot points
     read.table runif write.table
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.1.2
Check: Rd line widths
Result: NOTE
    Rd file 'imagevect.Rd':
     \usage lines wider than 90 characters:
     imagevect(x, labels, contour = FALSE, gridsize = 20, axes = TRUE, nlabx = 5, nlaby = 5, ...)
    
    Rd file 'phylocom.comdist.Rd':
     \usage lines wider than 90 characters:
     phylocom.comdist(sample = "sample", phylo = "phylo", method = "comdist", aw = TRUE, file = "comdist.txt")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64