CRAN Package Check Results for Package phylotools

Last updated on 2016-12-09 23:49:48.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.2 3.64 47.39 51.03 NOTE
r-devel-linux-x86_64-debian-gcc 0.1.2 3.70 48.37 52.08 NOTE
r-devel-linux-x86_64-fedora-clang 0.1.2 114.71 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 0.1.2 113.79 NOTE --no-stop-on-test-error
r-devel-macos-x86_64-clang 0.1.2 85.94 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 0.1.2 11.00 127.00 138.00 NOTE
r-patched-linux-x86_64 0.1.2 3.48 44.19 47.67 NOTE
r-patched-solaris-sparc 0.1.2 616.50 NOTE
r-patched-solaris-x86 0.1.2 127.50 NOTE
r-release-linux-x86_64 0.1.2 3.48 43.95 47.43 NOTE
r-release-osx-x86_64-mavericks 0.1.2 NOTE
r-release-windows-ix86+x86_64 0.1.2 10.00 131.00 141.00 NOTE
r-oldrel-windows-ix86+x86_64 0.1.2 18.00 78.00 96.00 OK

Check Details

Version: 0.1.2
Check: R code for possible problems
Result: NOTE
    RMPD: no visible global function definition for ‘as.dist’
    RMPD: no visible global function definition for ‘cophenetic’
    imagevect: no visible global function definition for ‘par’
    imagevect: no visible global function definition for ‘points’
    imagevect: no visible global function definition for ‘axis’
    inequality: no visible global function definition for ‘as.hclust’
    inequality: no visible global function definition for ‘cutree’
    meangini: no visible global function definition for ‘as.hclust’
    meangini: no visible global function definition for ‘par’
    meangini: no visible global function definition for ‘axis’
    meangini: no visible global function definition for ‘abline’
    meangini: no visible global function definition for ‘hist’
    phylocom.comdist: no visible global function definition for
     ‘read.table’
    phylocom.comdist: no visible global function definition for ‘as.dist’
    phylocom.comstruct: no visible global function definition for
     ‘read.table’
    phylocom.phylosor: no visible global function definition for
     ‘read.table’
    phylocom.phylosor: no visible global function definition for
     ‘write.table’
    phylocom.phylosor: no visible global function definition for ‘as.dist’
    plotcut: no visible global function definition for ‘plot’
    plotcut: no visible global function definition for ‘axis’
    plotcut: no visible global function definition for ‘as.hclust’
    plotcut: no visible global function definition for ‘abline’
    rh: no visible global function definition for ‘as.hclust’
    rh: no visible global function definition for ‘runif’
    Undefined global functions or variables:
     abline as.dist as.hclust axis cophenetic cutree hist par plot points
     read.table runif write.table
    Consider adding
     importFrom("graphics", "abline", "axis", "hist", "par", "plot",
     "points")
     importFrom("stats", "as.dist", "as.hclust", "cophenetic", "cutree",
     "runif")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.1.2
Check: Rd line widths
Result: NOTE
    Rd file 'imagevect.Rd':
     \usage lines wider than 90 characters:
     imagevect(x, labels, contour = FALSE, gridsize = 20, axes = TRUE, nlabx = 5, nlaby = 5, ...)
    
    Rd file 'phylocom.comdist.Rd':
     \usage lines wider than 90 characters:
     phylocom.comdist(sample = "sample", phylo = "phylo", method = "comdist", aw = TRUE, file = "comdist.txt")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1.2
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    RMPD: no visible global function definition for ‘as.dist’
    RMPD: no visible global function definition for ‘cophenetic’
    imagevect: no visible global function definition for ‘par’
    imagevect: no visible global function definition for ‘points’
    imagevect: no visible global function definition for ‘axis’
    inequality: no visible global function definition for ‘as.hclust’
    inequality: no visible global function definition for ‘cutree’
    meangini: no visible global function definition for ‘as.hclust’
    meangini: no visible global function definition for ‘par’
    meangini: no visible global function definition for ‘axis’
    meangini: no visible global function definition for ‘abline’
    meangini: no visible global function definition for ‘hist’
    phylocom.comdist: no visible global function definition for
     ‘read.table’
    phylocom.comdist: no visible global function definition for ‘as.dist’
    phylocom.comstruct: no visible global function definition for
     ‘read.table’
    phylocom.phylosor: no visible global function definition for
     ‘read.table’
    phylocom.phylosor: no visible global function definition for
     ‘write.table’
    phylocom.phylosor: no visible global function definition for ‘as.dist’
    plotcut: no visible global function definition for ‘plot’
    plotcut: no visible global function definition for ‘axis’
    plotcut: no visible global function definition for ‘as.hclust’
    plotcut: no visible global function definition for ‘abline’
    rh: no visible global function definition for ‘as.hclust’
    rh: no visible global function definition for ‘runif’
    Undefined global functions or variables:
     abline as.dist as.hclust axis cophenetic cutree hist par plot points
     read.table runif write.table
    Consider adding
     importFrom("graphics", "abline", "axis", "hist", "par", "plot",
     "points")
     importFrom("stats", "as.dist", "as.hclust", "cophenetic", "cutree",
     "runif")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 0.1.2
Flags: --no-stop-on-test-error
Check: Rd line widths
Result: NOTE
    Rd file 'imagevect.Rd':
     \usage lines wider than 90 characters:
     imagevect(x, labels, contour = FALSE, gridsize = 20, axes = TRUE, nlabx = 5, nlaby = 5, ...)
    
    Rd file 'phylocom.comdist.Rd':
     \usage lines wider than 90 characters:
     phylocom.comdist(sample = "sample", phylo = "phylo", method = "comdist", aw = TRUE, file = "comdist.txt")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc