CRAN Package Check Results for Package phytools

Last updated on 2015-07-01 03:47:40.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4-56 4.59 90.46 95.05 NOTE
r-devel-linux-x86_64-debian-gcc 0.4-56 4.68 88.91 93.59 NOTE
r-devel-linux-x86_64-fedora-clang 0.4-56 185.69 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4-56 174.44 NOTE
r-devel-osx-x86_64-clang 0.4-56 168.53 OK
r-devel-windows-ix86+x86_64 0.4-56 18.00 127.00 145.00 NOTE
r-patched-linux-x86_64 0.4-56 4.36 90.18 94.54 OK
r-patched-solaris-sparc 0.4-56 1146.40 OK
r-patched-solaris-x86 0.4-56 231.60 OK
r-release-linux-x86_64 0.4-56 4.43 89.15 93.58 OK
r-release-osx-x86_64-mavericks 0.4-56 OK
r-release-windows-ix86+x86_64 0.4-56 24.00 129.00 153.00 OK
r-oldrel-windows-ix86+x86_64 0.4-56 20.00 164.00 184.00 OK

Check Details

Version: 0.4-56
Check: R code for possible problems
Result: NOTE
    .check.pkg: no visible global function definition for
     ‘installed.packages’
    add.arrow: no visible global function definition for ‘hasArg’
    add.arrow: no visible global function definition for ‘strwidth’
    add.arrow: no visible global function definition for ‘par’
    add.arrow: no visible global function definition for ‘segments’
    add.color.bar: no visible global function definition for
     ‘flush.console’
    add.color.bar: no visible global function definition for ‘locator’
    add.color.bar: no visible global function definition for ‘hasArg’
    add.color.bar: no visible global function definition for ‘lines’
    add.color.bar: no visible global function definition for ‘text’
    add.random : randomPosn: no visible global function definition for
     ‘runif’
    add.random: no visible global function definition for ‘runif’
    add.simmap.legend: no visible global function definition for ‘hasArg’
    add.simmap.legend: no visible global function definition for ‘locator’
    add.simmap.legend: no visible global function definition for
     ‘strheight’
    add.simmap.legend: no visible global function definition for ‘par’
    add.simmap.legend: no visible global function definition for ‘text’
    add.simmap.legend: no visible global function definition for ‘strwidth’
    add.simmap.legend: no visible global function definition for ‘symbols’
    add.species.to.genus: no visible global function definition for ‘runif’
    anc.BM: no visible global function definition for ‘hasArg’
    anc.BM : likelihood: no visible global function definition for
     ‘setNames’
    anc.BM: no visible global function definition for ‘setNames’
    anc.BM: no visible global function definition for ‘optim’
    anc.Bayes: no visible global function definition for ‘str’
    anc.Bayes : log.prior: no visible global function definition for ‘dexp’
    anc.Bayes : log.prior: no visible global function definition for
     ‘dnorm’
    anc.Bayes: no visible global function definition for ‘rnorm’
    anc.Bayes: no visible global function definition for ‘runif’
    anc.OU: no visible global function definition for ‘hasArg’
    anc.OU: no visible global function definition for ‘optim’
    anc.OU: no visible global function definition for ‘setNames’
    anc.trend: no visible global function definition for ‘var’
    anc.trend: no visible global function definition for ‘optim’
    ancThresh : <anonymous>: no visible global function definition for
     ‘runif’
    ancThresh: no visible global function definition for ‘setNames’
    ancThresh: no visible global function definition for ‘palette’
    ancThresh: no visible global function definition for ‘rnorm’
    ancThresh: no visible global function definition for ‘runif’
    apeAce: no visible global function definition for ‘hasArg’
    apeAce: no visible global function definition for ‘nlminb’
    ave.rates: no visible global function definition for ‘plot’
    biplot.phyl.pca: no visible global function definition for ‘hasArg’
    biplot.phyl.pca: no visible binding for global variable ‘biplot’
    bm: no visible global function definition for ‘plot’
    bm: no visible global function definition for ‘lines’
    bm: no visible global function definition for ‘hasArg’
    bm: no visible binding for global variable ‘colors’
    bmPlot: no visible global function definition for ‘hasArg’
    bmPlot : bmSim: no visible global function definition for ‘rnorm’
    bmPlot: no visible global function definition for ‘setNames’
    bmPlot : <anonymous>: no visible global function definition for
     ‘setNames’
    branching.diffusion: no visible global function definition for ‘par’
    branching.diffusion: no visible global function definition for ‘plot’
    branching.diffusion: no visible global function definition for ‘runif’
    branching.diffusion: no visible global function definition for ‘rnorm’
    branching.diffusion: no visible global function definition for
     ‘dev.hold’
    branching.diffusion: no visible binding for global variable ‘lines’
    branching.diffusion: no visible global function definition for
     ‘dev.flush’
    brownie.lite: no visible global function definition for ‘hasArg’
    brownie.lite: no visible global function definition for ‘optim’
    brownie.lite: no visible global function definition for ‘runif’
    brownie.lite: no visible global function definition for ‘pchisq’
    brownie.lite: no visible global function definition for ‘rnorm’
    brownieREML : lik1: no visible global function definition for
     ‘setNames’
    brownieREML : lik1: no visible global function definition for ‘dnorm’
    brownieREML : lik2: no visible global function definition for ‘dnorm’
    brownieREML: no visible global function definition for ‘optim’
    brownieREML: no visible global function definition for ‘setNames’
    brownieREML: no visible global function definition for ‘runif’
    collapseTree: no visible global function definition for ‘hasArg’
    collapseTree: no visible global function definition for ‘dev.hold’
    collapseTree: no visible global function definition for ‘par’
    collapseTree: no visible global function definition for ‘dev.flush’
    collapseTree: no visible global function definition for ‘locator’
    collapseTree: no visible global function definition for ‘flush.console’
    contMap: no visible global function definition for ‘hasArg’
    contMap: no visible global function definition for ‘rainbow’
    countSimmap : ff: no visible global function definition for ‘setNames’
    densityMap: no visible global function definition for ‘hasArg’
    densityMap: no visible global function definition for ‘rainbow’
    describe.simmap: no visible global function definition for ‘hasArg’
    describe.simmap: no visible global function definition for ‘setNames’
    drop.leaves: no visible global function definition for ‘hasArg’
    droptipTree: no visible global function definition for ‘hasArg’
    droptipTree: no visible global function definition for ‘par’
    estDiversity: no visible global function definition for ‘hasArg’
    estDiversity: no visible global function definition for ‘setNames’
    evol.rate.mcmc: no visible global function definition for ‘str’
    evol.rate.mcmc : random.node: no visible global function definition for
     ‘runif’
    evol.rate.mcmc : tree.step: no visible global function definition for
     ‘runif’
    evol.rate.mcmc : log.prior: no visible global function definition for
     ‘dnorm’
    evol.rate.mcmc : propose.sig: no visible global function definition for
     ‘rnorm’
    evol.rate.mcmc : propose.a: no visible global function definition for
     ‘rnorm’
    evol.rate.mcmc : propose.loc: no visible global function definition for
     ‘runif’
    evol.rate.mcmc : propose.loc: no visible global function definition for
     ‘rexp’
    evol.rate.mcmc: no visible global function definition for ‘runif’
    evol.vcv: no visible global function definition for ‘hasArg’
    evol.vcv: no visible global function definition for ‘optim’
    evol.vcv: no visible global function definition for ‘pchisq’
    evolvcv.lite: no visible global function definition for ‘optim’
    evolvcv.lite: no visible global function definition for ‘runif’
    extract.strahlerNumber: no visible global function definition for
     ‘layout’
    fan: no visible global function definition for ‘setNames’
    fan: no visible global function definition for ‘par’
    fan: no visible global function definition for ‘strwidth’
    fan: no visible global function definition for ‘optimize’
    fan: no visible global function definition for ‘plot.new’
    fan: no visible global function definition for ‘plot.window’
    fan: no visible global function definition for ‘segments’
    fan: no visible global function definition for ‘text’
    fastBM: no visible global function definition for ‘hasArg’
    fitDiversityModel : lik: no visible global function definition for
     ‘plot’
    fitDiversityModel: no visible global function definition for ‘optimize’
    fitDiversityModel: no visible global function definition for ‘var’
    fitPagel: no visible global function definition for ‘hasArg’
    fitPagel: no visible global function definition for ‘setNames’
    fitPagel: no visible global function definition for ‘logLik’
    fitPagel: no visible global function definition for ‘pchisq’
    foldtoLower: no visible global function definition for ‘as.dist’
    fossilML : lik.tree : <anonymous>: no visible global function
     definition for ‘lines’
    fossilML : lik.tree: no visible global function definition for ‘title’
    fossilML : lik.tree: no visible global function definition for ‘axis’
    fossilML: no visible global function definition for ‘optim’
    fossilML : <anonymous>: no visible global function definition for
     ‘lines’
    fossilML: no visible global function definition for ‘title’
    fossilML: no visible global function definition for ‘axis’
    gammatest: no visible global function definition for ‘pnorm’
    getCladesofSize: no visible global function definition for ‘setNames’
    getStates: no visible global function definition for ‘setNames’
    labelSubTree: no visible global function definition for ‘strwidth’
    labelSubTree: no visible global function definition for ‘strheight’
    labelSubTree: no visible global function definition for ‘lines’
    labelSubTree: no visible global function definition for ‘text’
    locate.fossil: no visible global function definition for ‘hasArg’
    locate.yeti: no visible global function definition for ‘hasArg’
    logPrior: no visible global function definition for ‘dexp’
    ltt: no visible binding for global variable ‘trees’
    ltt: no visible global function definition for ‘lines’
    ltt95: no visible global function definition for ‘hasArg’
    ltt95 : <anonymous>: no visible global function definition for ‘median’
    ltt95: no visible global function definition for ‘median’
    ltt95: no visible global function definition for ‘plot’
    make.era.map: no visible global function definition for ‘hasArg’
    make.simmap: no visible global function definition for ‘hasArg’
    make.simmap: no visible global function definition for ‘setNames’
    map.to.singleton: no visible global function definition for ‘setNames’
    matchNodes: no visible global function definition for ‘hasArg’
    matchNodes : <anonymous>: no visible global function definition for
     ‘cor’
    mcmcBM: no visible global function definition for ‘aggregate’
    mcmcBM: no visible binding for global variable ‘var’
    mcmcBM: no visible global function definition for ‘str’
    mcmcBM : likelihood: no visible global function definition for ‘dnorm’
    mcmcBM : log.prior: no visible global function definition for ‘dexp’
    mcmcBM : log.prior: no visible global function definition for ‘dnorm’
    mcmcBM: no visible global function definition for ‘rnorm’
    mcmcBM: no visible global function definition for ‘runif’
    mcmcBM.full: no visible global function definition for ‘aggregate’
    mcmcBM.full: no visible binding for global variable ‘var’
    mcmcBM.full: no visible global function definition for ‘str’
    mcmcBM.full : likelihood: no visible global function definition for
     ‘dnorm’
    mcmcBM.full : log.prior: no visible global function definition for
     ‘dexp’
    mcmcBM.full : log.prior: no visible global function definition for
     ‘dnorm’
    mcmcBM.full: no visible global function definition for ‘rnorm’
    mcmcBM.full: no visible global function definition for ‘runif’
    mcmcLambda: no visible global function definition for ‘aggregate’
    mcmcLambda: no visible binding for global variable ‘var’
    mcmcLambda: no visible global function definition for ‘str’
    mcmcLambda : likelihood: no visible global function definition for
     ‘dnorm’
    mcmcLambda : log.prior: no visible global function definition for
     ‘dexp’
    mcmcLambda : log.prior: no visible global function definition for
     ‘dunif’
    mcmcLambda : log.prior: no visible global function definition for
     ‘dnorm’
    mcmcLambda: no visible global function definition for ‘rnorm’
    mcmcLambda: no visible global function definition for ‘runif’
    mcmcQ : update: no visible global function definition for ‘rnorm’
    mcmcQ: no visible global function definition for ‘rgamma’
    mcmcQ: no visible global function definition for ‘dgamma’
    mcmcQ: no visible global function definition for ‘runif’
    mrp.supertree: no visible global function definition for ‘hasArg’
    multi.mantel: no visible global function definition for ‘lm’
    paintBranches : <anonymous>: no visible global function definition for
     ‘setNames’
    paintBranches: no visible global function definition for ‘setNames’
    pbtree: no visible global function definition for ‘hasArg’
    pbtree: no visible global function definition for ‘rexp’
    pbtree: no visible global function definition for ‘rbinom’
    pbtree: no visible global function definition for ‘rgeom’
    pbtree: no visible global function definition for ‘runif’
    pgls.Ives: no visible global function definition for ‘aggregate’
    pgls.Ives: no visible global function definition for ‘setNames’
    pgls.Ives: no visible binding for global variable ‘var’
    pgls.Ives: no visible global function definition for ‘runif’
    pgls.Ives: no visible global function definition for ‘lm’
    pgls.Ives: no visible global function definition for ‘optim’
    phenogram: no visible global function definition for ‘hasArg’
    phenogram: no visible global function definition for ‘par’
    phenogram: no visible global function definition for ‘strwidth’
    phenogram: no visible global function definition for ‘optimize’
    phenogram: no visible global function definition for ‘flush.console’
    phenogram: no visible global function definition for ‘dev.hold’
    phenogram: no visible global function definition for ‘plot’
    phenogram: no visible global function definition for ‘text’
    phenogram: no visible global function definition for ‘lines’
    phenogram: no visible global function definition for ‘palette’
    phenogram: no visible global function definition for ‘axis’
    phenogram: no visible global function definition for ‘title’
    phenogram: no visible global function definition for ‘dev.flush’
    phenogram95: no visible global function definition for ‘hasArg’
    phenogram95: no visible global function definition for ‘dev.hold’
    phenogram95: no visible global function definition for ‘flush.console’
    phenogram95: no visible global function definition for ‘dev.flush’
    phyl.RMA: no visible global function definition for ‘optimize’
    phyl.RMA: no visible global function definition for ‘pt’
    phyl.cca: no visible global function definition for ‘optimize’
    phyl.cca: no visible global function definition for ‘pchisq’
    phyl.pairedttest: no visible global function definition for ‘optim’
    phyl.pairedttest: no visible global function definition for ‘pt’
    phyl.pca: no visible global function definition for ‘hasArg’
    phyl.pca: no visible global function definition for ‘optimize’
    phyl.resid: no visible global function definition for ‘optimize’
    phylANOVA: no visible global function definition for ‘anova’
    phylANOVA: no visible global function definition for ‘lm’
    phylANOVA: no visible global function definition for ‘p.adjust’
    phylo.to.map: no visible global function definition for ‘hasArg’
    phyloScattergram: no visible global function definition for ‘hasArg’
    phyloScattergram: no visible global function definition for ‘setNames’
    phyloScattergram: no visible global function definition for ‘palette’
    phyloScattergram: no visible global function definition for ‘dev.hold’
    phyloScattergram: no visible global function definition for
     ‘flush.console’
    phyloScattergram: no visible global function definition for ‘par’
    phyloScattergram: no visible global function definition for ‘axis’
    phyloScattergram: no visible binding for global variable ‘title’
    phyloScattergram: no visible global function definition for ‘dev.flush’
    phylomorphospace: no visible global function definition for ‘setNames’
    phylomorphospace: no visible global function definition for ‘hasArg’
    phylomorphospace: no visible global function definition for ‘palette’
    phylomorphospace: no visible global function definition for ‘plot’
    phylomorphospace: no visible global function definition for ‘lines’
    phylomorphospace: no visible global function definition for ‘points’
    phylomorphospace: no visible global function definition for ‘par’
    phylomorphospace: no visible global function definition for ‘text’
    phylomorphospace3d: no visible global function definition for ‘hasArg’
    phylomorphospace3d: no visible global function definition for ‘points’
    phylomorphospace3d: no visible global function definition for ‘lines’
    phylomorphospace3d: no visible global function definition for ‘text’
    phylosig: no visible global function definition for ‘optimize’
    phylosig: no visible global function definition for ‘pchisq’
    phylosig: no visible global function definition for ‘runif’
    phylosig: no visible global function definition for ‘optim’
    plot.backbonePhylo: no visible global function definition for ‘hasArg’
    plot.backbonePhylo: no visible global function definition for
     ‘plot.new’
    plot.backbonePhylo: no visible global function definition for ‘par’
    plot.backbonePhylo: no visible global function definition for
     ‘strwidth’
    plot.backbonePhylo: no visible global function definition for
     ‘optimize’
    plot.backbonePhylo: no visible global function definition for
     ‘plot.window’
    plot.backbonePhylo: no visible global function definition for ‘lines’
    plot.backbonePhylo: no visible global function definition for ‘polygon’
    plot.backbonePhylo: no visible global function definition for ‘text’
    plot.contMap: no visible global function definition for ‘hasArg’
    plot.contMap: no visible global function definition for ‘plot’
    plot.densityMap: no visible global function definition for ‘hasArg’
    plot.densityMap: no visible global function definition for ‘dev.hold’
    plot.densityMap: no visible global function definition for ‘par’
    plot.densityMap: no visible global function definition for
     ‘capture.output’
    plot.densityMap: no visible global function definition for ‘dev.flush’
    plot.describe.simmap: no visible global function definition for
     ‘hasArg’
    plot.describe.simmap: no visible global function definition for
     ‘setNames’
    plot.describe.simmap: no visible global function definition for
     ‘palette’
    plot.ltt95: no visible global function definition for ‘hasArg’
    plot.ltt95: no visible global function definition for ‘plot’
    plot.ltt95: no visible global function definition for ‘lines’
    plot.phyl.pca: no visible global function definition for ‘hasArg’
    plot.phyl.pca: no visible global function definition for ‘screeplot’
    plot.phylo.to.map: no visible global function definition for ‘hasArg’
    plot.phylo.to.map: no visible global function definition for ‘par’
    plot.phylo.to.map: no visible global function definition for ‘plot.new’
    plot.phylo.to.map: no visible global function definition for
     ‘plot.window’
    plot.phylo.to.map: no visible global function definition for ‘rect’
    plot.phylo.to.map: no visible global function definition for ‘strwidth’
    plot.phylo.to.map: no visible global function definition for ‘lines’
    plot.phylo.to.map: no visible global function definition for ‘points’
    plot.phylo.to.map: no visible global function definition for ‘text’
    plot.phylo.to.map: no visible global function definition for ‘setNames’
    plotBranchbyTrait: no visible global function definition for ‘hasArg’
    plotBranchbyTrait: no visible global function definition for ‘par’
    plotBranchbyTrait: no visible global function definition for
     ‘heat.colors’
    plotBranchbyTrait: no visible global function definition for ‘gray’
    plotBranchbyTrait: no visible global function definition for ‘rainbow’
    plotContMap: no visible global function definition for ‘hasArg’
    plotDensityMap: no visible global function definition for ‘hasArg’
    plotFan: no visible global function definition for ‘setNames’
    plotFan: no visible global function definition for ‘par’
    plotFan: no visible global function definition for ‘strwidth’
    plotFan: no visible global function definition for ‘optimize’
    plotFan: no visible global function definition for ‘plot.new’
    plotFan: no visible global function definition for ‘plot.window’
    plotFan: no visible global function definition for ‘lines’
    plotFan: no visible global function definition for ‘text’
    plotPhylogram: no visible global function definition for ‘median’
    plotPhylogram: no visible global function definition for ‘par’
    plotPhylogram: no visible global function definition for ‘plot.new’
    plotPhylogram: no visible global function definition for ‘strwidth’
    plotPhylogram: no visible global function definition for ‘optimize’
    plotPhylogram: no visible global function definition for ‘plot.window’
    plotPhylogram: no visible global function definition for ‘lines’
    plotPhylogram: no visible global function definition for ‘points’
    plotPhylogram: no visible global function definition for ‘symbols’
    plotPhylogram: no visible global function definition for ‘strheight’
    plotPhylogram: no visible global function definition for ‘text’
    plotSimmap: no visible global function definition for ‘par’
    plotSimmap: no visible global function definition for ‘palette’
    plotSimmap: no visible global function definition for ‘dev.hold’
    plotSimmap: no visible global function definition for ‘dev.flush’
    plotThresh: no visible global function definition for ‘setNames’
    plotThresh: no visible global function definition for ‘par’
    plotTree: no visible global function definition for ‘hasArg’
    plotTree: no visible global function definition for ‘par’
    plotTree.singletons: no visible global function definition for
     ‘setNames’
    plotTree.singletons: no visible global function definition for
     ‘palette’
    plotTree.singletons: no visible global function definition for
     ‘plot.new’
    plotTree.singletons: no visible global function definition for ‘par’
    plotTree.singletons: no visible global function definition for
     ‘strwidth’
    plotTree.singletons: no visible global function definition for
     ‘optimize’
    plotTree.singletons: no visible global function definition for
     ‘plot.window’
    plotTree.singletons: no visible global function definition for ‘axis’
    plotTree.singletons: no visible global function definition for ‘lines’
    plotTree.singletons: no visible global function definition for ‘points’
    plotTree.singletons: no visible global function definition for ‘text’
    plotTree.wBars: no visible global function definition for ‘hasArg’
    plotTree.wBars: no visible global function definition for ‘par’
    plotTree.wBars: no visible global function definition for ‘strwidth’
    plotTree.wBars: no visible global function definition for ‘optimize’
    plotTree.wBars: no visible global function definition for
     ‘capture.output’
    plotTree.wBars: no visible global function definition for ‘polygon’
    print.brownie.lite: no visible global function definition for ‘hasArg’
    print.evol.vcv: no visible global function definition for ‘hasArg’
    print.rateshift: no visible global function definition for ‘hasArg’
    ratebystate: no visible global function definition for ‘hasArg’
    ratebystate: no visible global function definition for ‘cor’
    ratebystate: no visible global function definition for ‘setNames’
    ratebystate: no visible global function definition for ‘lm’
    ratebystate : foo: no visible global function definition for ‘cor’
    rateshift: no visible global function definition for ‘hasArg’
    rateshift : lik: no visible global function definition for ‘setNames’
    rateshift : lik: no visible global function definition for ‘rainbow’
    rateshift : lik: no visible global function definition for ‘title’
    rateshift : lik: no visible global function definition for ‘lines’
    rateshift: no visible global function definition for ‘rchisq’
    rateshift: no visible global function definition for ‘runif’
    rateshift: no visible global function definition for ‘optim’
    rateshift: no visible global function definition for ‘optimHess’
    rateshift: no visible global function definition for ‘setNames’
    rateshift: no visible global function definition for ‘rainbow’
    rateshift: no visible global function definition for ‘title’
    rateshift: no visible global function definition for ‘lines’
    rep.multiPhylo: no visible global function definition for ‘hasArg’
    rep.phylo: no visible global function definition for ‘hasArg’
    rerootingMethod: no visible global function definition for ‘hasArg’
    rescaleSimmap: no visible global function definition for ‘hasArg’
    rotateNodes: no visible global function definition for ‘hasArg’
    roundPhylogram: no visible global function definition for ‘par’
    roundPhylogram: no visible global function definition for ‘strwidth’
    roundPhylogram: no visible global function definition for ‘optimize’
    roundPhylogram: no visible global function definition for ‘plot.new’
    roundPhylogram: no visible global function definition for ‘plot.window’
    roundPhylogram: no visible global function definition for ‘curve’
    roundPhylogram: no visible global function definition for ‘text’
    rstate: no visible global function definition for ‘rmultinom’
    sampleFrom: no visible global function definition for ‘runif’
    sampleFrom: no visible global function definition for ‘rnorm’
    sch: no visible global function definition for ‘setNames’
    sch: no visible global function definition for ‘rexp’
    setMap: no visible global function definition for ‘hasArg’
    setMap: no visible global function definition for ‘setNames’
    setMap: no visible global function definition for ‘colorRampPalette’
    sim.corrs: no visible global function definition for ‘rnorm’
    sim.history: no visible global function definition for ‘hasArg’
    sim.history: no visible global function definition for ‘rexp’
    sim.ratebystate: no visible global function definition for ‘hasArg’
    simBM: no visible global function definition for ‘rnorm’
    simOU: no visible global function definition for ‘rnorm’
    simOU: no visible global function definition for ‘setNames’
    skewers: no visible global function definition for ‘runif’
    skewers : foo: no visible global function definition for ‘runif’
    splitplotTree: no visible global function definition for ‘par’
    splitplotTree: no visible global function definition for ‘layout’
    splitplotTree: no visible global function definition for ‘plot.new’
    splitplotTree: no visible global function definition for ‘strwidth’
    splitplotTree: no visible global function definition for ‘plot.window’
    splitplotTree: no visible global function definition for ‘lines’
    splitplotTree: no visible global function definition for ‘text’
    splitplotTree: no visible global function definition for ‘dev.new’
    spreadlabels: no visible global function definition for ‘setNames’
    spreadlabels: no visible global function definition for ‘strheight’
    spreadlabels: no visible global function definition for ‘optim’
    statdist: no visible global function definition for ‘optim’
    statdist: no visible global function definition for ‘setNames’
    statdist: no visible global function definition for ‘optimize’
    strahlerNumber: no visible global function definition for ‘setNames’
    tTests: no visible binding for global variable ‘sd’
    th: no visible global function definition for ‘hasArg’
    th: no visible binding for global variable ‘colors’
    th: no visible global function definition for ‘plot’
    th: no visible global function definition for ‘lines’
    th: no visible global function definition for ‘setNames’
    threshBayes : logPrior: no visible global function definition for
     ‘dexp’
    threshBayes : logPrior: no visible global function definition for
     ‘dnorm’
    threshBayes : logPrior: no visible global function definition for
     ‘dunif’
    threshBayes: no visible global function definition for ‘rnorm’
    threshBayes: no visible global function definition for ‘runif’
    threshDIC: no visible global function definition for ‘setNames’
    threshDIC: no visible global function definition for ‘var’
    traitgram3d: no visible global function definition for ‘hasArg’
    vcvPhylo: no visible global function definition for ‘hasArg’
    writeAncestors: no visible global function definition for ‘hasArg’
    writeAncestors: no visible binding for global variable ‘trees’
    yetiML: no visible global function definition for ‘layout’
    yetiML: no visible global function definition for ‘plot.new’
    yetiML: no visible global function definition for ‘text’
    yetiML: no visible global function definition for ‘optimize’
    yetiREML : lik.edge: no visible global function definition for ‘dnorm’
    yetiREML: no visible global function definition for ‘layout’
    yetiREML: no visible global function definition for ‘plot.new’
    yetiREML: no visible global function definition for ‘text’
    yetiREML: no visible global function definition for ‘optimize’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64