CRAN Package Check Results for Package pi0

Last updated on 2014-07-29 23:47:13.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3-250 6.30 93.76 100.06 NOTE
r-devel-linux-x86_64-debian-gcc 1.3-250 6.53 93.35 99.88 NOTE
r-devel-linux-x86_64-fedora-clang 1.3-250 221.35 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3-250 210.83 NOTE
r-devel-osx-x86_64-clang 1.3-250 162.90 NOTE
r-devel-windows-ix86+x86_64 1.3-250 19.00 184.00 203.00 NOTE
r-patched-linux-x86_64 1.3-250 6.92 96.60 103.52 NOTE
r-patched-solaris-sparc 1.3-250 1331.50 NOTE
r-patched-solaris-x86 1.3-250 310.50 NOTE
r-release-linux-ix86 1.3-250 8.32 131.51 139.83 NOTE
r-release-linux-x86_64 1.3-250 6.80 99.08 105.88 NOTE
r-release-osx-x86_64-mavericks 1.3-250 NOTE
r-release-osx-x86_64-snowleopard 1.3-250 NOTE
r-release-windows-ix86+x86_64 1.3-250 19.00 191.00 210.00 NOTE
r-oldrel-windows-ix86+x86_64 1.3-250 23.00 197.00 220.00 NOTE

Check Details

Version: 1.3-250
Check: package dependencies
Result: NOTE
    Package which this enhances but not available for checking: OCplus
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.3-250
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: LowRankQP
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3-250
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     plot.subex
    Found the platform-specific device:
     x11
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    Found the following assignments to the global environment:
    File pi0/R/cond.cdf.R :
     assign(".pi0cdfp", hiddenEnv, envir = globalenv())
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 1.3-250
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: OCplus
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.3-250
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ToDoList.txt
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3-250
Check: Rd line widths
Result: NOTE
    Rd file 'combn2R.Rd':
     \examples lines wider than 100 characters:
     combn2R(1:4*2,2,5,1,R=5, sample.method="diff2") ### no common samples, even considering only one group
    
    Rd file 'nparncp.Rd':
     \usage lines wider than 90 characters:
     nparncpt.sqp(tstat, df, penalty=c('3rd.deriv','2nd.deriv','1st.deriv'), lambdas=10^seq(-1,5,by=1),
     starts, IC=c('BIC','CAIC','HQIC','AIC'), K=100, bounds=quantile(tstat,c(.01,.99)),
     solver=c('solve.QP','lsei','ipop','LowRankQP'),plotit=FALSE, verbose=FALSE, approx.hess=TRUE, ... )
    
    Rd file 'pt.sad.Rd':
     \usage lines wider than 90 characters:
     dt.sad(x, df, ncp = 0, log = FALSE, normalize = c("approximate", "derivative", "integral", "none"), epsilon = 1e-04)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3-250
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     plot.subex
    Found the platform-specific device:
     x11
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
Flavors: r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-sparc, r-patched-solaris-x86