CRAN Package Check Results for Package pi0

Last updated on 2015-06-30 19:47:58.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3-250 5.13 83.75 88.88 NOTE
r-devel-linux-x86_64-debian-gcc 1.3-250 5.34 81.83 87.18 NOTE
r-devel-linux-x86_64-fedora-clang 1.3-250 170.19 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3-250 161.44 NOTE
r-devel-osx-x86_64-clang 1.3-250 144.71 NOTE
r-devel-windows-ix86+x86_64 1.3-250 28.00 179.00 207.00 NOTE
r-patched-linux-x86_64 1.3-250 5.11 84.23 89.34 NOTE
r-patched-solaris-sparc 1.3-250 1141.70 NOTE
r-patched-solaris-x86 1.3-250 260.00 NOTE
r-release-linux-x86_64 1.3-250 5.44 83.04 88.49 NOTE
r-release-osx-x86_64-mavericks 1.3-250 NOTE
r-release-windows-ix86+x86_64 1.3-250 25.00 180.00 205.00 NOTE
r-oldrel-windows-ix86+x86_64 1.3-250 23.00 268.00 291.00 NOTE

Check Details

Version: 1.3-250
Check: package dependencies
Result: NOTE
    Package which this enhances but not available for checking: ‘OCplus’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 1.3-250
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘ToDoList.txt’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.3-250
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘LowRankQP’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3-250
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     marginal.dt.nparncpt marginal.dt.parncpt marginal.dt.sparncpt
     sparncpF.nparncpF sparncpF.numeric sparncpF.parncpF sparncpt.nparncpt
     sparncpt.numeric sparncpt.parncpt
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.3-250
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘plot.subex’
    Found the platform-specific device:
     ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    agjack.pi0: no visible global function definition for ‘aggregate’
    cond.cdf: no visible global function definition for ‘qnorm’
    cond.cdf: no visible global function definition for ‘pnorm’
    cond.cdf: no visible global function definition for ‘qt’
    cond.cdf: no visible global function definition for ‘pt’
    convest: no visible global function definition for ‘points’
    convest: no visible global function definition for ‘approxfun’
    dFsnc.mix: no visible global function definition for ‘df’
    discTMix : ff: no visible global function definition for ‘pt’
    discTMix: no visible global function definition for ‘optim’
    dncp.nparncpF : d.ncp : z: no visible global function definition for
     ‘dchisq’
    dncp.nparncpt : d.ncp: no visible global function definition for
     ‘dnorm’
    dncp.parncpF : ans: no visible global function definition for ‘dchisq’
    dncp.parncpt : ans: no visible global function definition for ‘dnorm’
    dt.int2: no visible global function definition for ‘dt’
    dt.lap: no visible global function definition for ‘pnorm’
    dt.sad: no visible global function definition for ‘dnorm’
    dt.sad: no visible global function definition for ‘dt’
    dt.sad: no visible global function definition for ‘integrate’
    dtn.mix: no visible global function definition for ‘dnorm’
    dtn.mix: no visible global function definition for ‘dt’
    dtn.mix: no visible global function definition for ‘pnorm’
    extrp.pi0: no visible binding for global variable ‘start’
    extrp.pi0.both: no visible global function definition for ‘optimize’
    extrp.pi0.both.gam2 : f.obj: no visible global function definition for
     ‘optimize’
    extrp.pi0.both.gam2: no visible global function definition for
     ‘optimize’
    extrp.pi0.gam2: no visible global function definition for ‘optimize’
    extrp.pi0.rate: no visible global function definition for ‘optimize’
    extrp.pi0.rate.gam2 : f.obj: no visible global function definition for
     ‘optimize’
    extrp.pi0.rate.gam2: no visible global function definition for
     ‘optimize’
    extrp.pi0.slope.gam2: no visible global function definition for
     ‘optimize’
    fitted.discTMix: no visible global function definition for ‘dt’
    fitted.nparncpF: no visible global function definition for ‘df’
    fitted.nparncpt: no visible global function definition for ‘dt’
    fitted.parncpF: no visible global function definition for ‘df’
    fitted.parncpt: no visible global function definition for ‘dt’
    histf1 : ff: no visible global function definition for ‘hist’
    histf1: no visible global function definition for ‘qnorm’
    histf1: no visible global function definition for ‘nclass.Sturges’
    histf1: no visible global function definition for ‘pnorm’
    histf1: no visible global function definition for ‘nclass.scott’
    histf1: no visible global function definition for ‘nclass.FD’
    histf1: no visible global function definition for ‘hist’
    histf1: no visible global function definition for ‘abline’
    lfdr.discTMix: no visible global function definition for ‘dt’
    lfdr.nparncpt: no visible global function definition for ‘dt’
    lfdr.parncpt: no visible global function definition for ‘dt’
    lfdr.sparncpt: no visible global function definition for ‘dt’
    mTruncNorm: no visible global function definition for ‘pnorm’
    mTruncNorm: no visible global function definition for ‘integrate’
    marginal.dt.nparncpt : single.df.ans: no visible global function
     definition for ‘dt’
    marginal.dt.parncpt : single.df.ans: no visible global function
     definition for ‘dt’
    matrix.t.test: no visible global function definition for ‘pt’
    momeff.nonzeromean: no visible global function definition for
     ‘quantile’
    momeff.nonzeromean : <anonymous>: no visible global function definition
     for ‘dt’
    momeff.nonzeromean: no visible global function definition for ‘dt’
    momeff.nonzeromean: no visible global function definition for ‘pnorm’
    momeff.nonzeromean: no visible global function definition for
     ‘optimize’
    momeff.nonzeromean: no visible global function definition for ‘pt’
    momeff.zeromean: no visible global function definition for ‘optimize’
    nparncpF.sqp: no visible global function definition for ‘quantile’
    nparncpF.sqp: no visible global function definition for ‘optimize’
    nparncpF.sqp : <anonymous>: no visible global function definition for
     ‘qchisq’
    nparncpF.sqp: no visible global function definition for ‘df’
    nparncpF.sqp: no visible global function definition for ‘as’
    nparncpF.sqp : <anonymous>: no visible global function definition for
     ‘dchisq’
    nparncpF.sqp : hess.NPLL: no visible global function definition for
     ‘as’
    nparncpF.sqp : sqp: no visible global function definition for
     ‘LowRankQP’
    nparncpF.sqp: no visible global function definition for ‘sd’
    nparncpp: no visible global function definition for ‘install.packages’
    nparncpp: no visible global function definition for ‘hist’
    nparncpp: no visible global function definition for ‘LowRankQP’
    nparncpp: no visible global function definition for ‘approxfun’
    nparncpp : FIDR: no visible global function definition for ‘approx’
    nparncpt.sqp: no visible global function definition for ‘quantile’
    nparncpt.sqp: no visible global function definition for ‘dt’
    nparncpt.sqp: no visible global function definition for ‘as’
    nparncpt.sqp : hess.NPLL: no visible global function definition for
     ‘as’
    nparncpt.sqp : adjust.pi0: no visible global function definition for
     ‘optimize’
    nparncpt.sqp : sqp: no visible global function definition for
     ‘LowRankQP’
    nparncpt.sqp: no visible global function definition for ‘sd’
    parncpF.lbfgsb.central: no visible global function definition for ‘df’
    parncpF.lbfgsb.central : obj: no visible global function definition for
     ‘df’
    parncpF.lbfgsb.central: no visible global function definition for
     ‘optim’
    parncpF.lbfgsb.noncentral: no visible global function definition for
     ‘df’
    parncpF.lbfgsb.noncentral: no visible global function definition for
     ‘optim’
    parncpF.unconstrained.central: no visible global function definition
     for ‘make.link’
    parncpF.unconstrained.central: no visible global function definition
     for ‘df’
    parncpF.unconstrained.central : obj: no visible global function
     definition for ‘df’
    parncpF.unconstrained.central: no visible global function definition
     for ‘optim’
    parncpF.unconstrained.noncentral: no visible global function definition
     for ‘make.link’
    parncpF.unconstrained.noncentral: no visible global function definition
     for ‘df’
    parncpF.unconstrained.noncentral: no visible global function definition
     for ‘optim’
    parncpt.bfgs.0mean: no visible global function definition for ‘dt’
    parncpt.bfgs.0mean : obj: no visible global function definition for
     ‘dt’
    parncpt.bfgs.0mean : deriv.0mean: no visible global function definition
     for ‘dt’
    parncpt.bfgs.0mean: no visible global function definition for ‘optim’
    parncpt.bfgs.non0mean: no visible global function definition for ‘dt’
    parncpt.bfgs.non0mean: no visible global function definition for
     ‘optim’
    parncpt.bfgs.non0mean: no visible global function definition for
     ‘nlminb’
    parncpt.momeff: no visible global function definition for ‘quantile’
    parncpt.momeff : <anonymous>: no visible global function definition for
     ‘dt’
    parncpt.momeff: no visible global function definition for ‘dt’
    parncpt.momeff: no visible global function definition for ‘pnorm’
    pavaf1: no visible global function definition for ‘qnorm’
    pavaf1: no visible global function definition for ‘nclass.Sturges’
    pavaf1: no visible global function definition for ‘pnorm’
    pavaf1: no visible global function definition for ‘nclass.scott’
    pavaf1: no visible global function definition for ‘nclass.FD’
    pavaf1: no visible global function definition for ‘hist’
    pavaf1: no visible global function definition for ‘box’
    pavaf1: no visible global function definition for ‘lines’
    pavaf1: no visible global function definition for ‘abline’
    pdf.dist: no visible global function definition for ‘integrate’
    plot.extrpi0: no visible global function definition for ‘persp’
    plot.extrpi0: no visible global function definition for ‘points’
    plot.extrpi0: no visible global function definition for ‘trans3d’
    plot.nparncpF: no visible global function definition for ‘par’
    plot.nparncpF: no visible global function definition for ‘lines’
    plot.nparncpF: no visible global function definition for ‘abline’
    plot.nparncpF : d.ncp : z: no visible global function definition for
     ‘dchisq’
    plot.nparncpF: no visible global function definition for ‘curve’
    plot.nparncpF: no visible global function definition for ‘rug’
    plot.nparncpt: no visible global function definition for ‘par’
    plot.nparncpt: no visible global function definition for ‘lines’
    plot.nparncpt: no visible global function definition for ‘abline’
    plot.nparncpt: no visible global function definition for ‘title’
    plot.nparncpt : d.ncp: no visible global function definition for
     ‘dnorm’
    plot.nparncpt: no visible global function definition for ‘curve’
    plot.nparncpt: no visible global function definition for ‘rug’
    plot.parncpF: no visible global function definition for ‘par’
    plot.parncpF: no visible global function definition for ‘hist’
    plot.parncpF: no visible global function definition for ‘lines’
    plot.parncpF : d.ncp: no visible global function definition for
     ‘dchisq’
    plot.parncpF: no visible global function definition for ‘curve’
    plot.parncpt: no visible global function definition for ‘par’
    plot.parncpt: no visible global function definition for ‘hist’
    plot.parncpt: no visible global function definition for ‘lines’
    plot.parncpt : d.ncp: no visible global function definition for ‘dnorm’
    plot.parncpt: no visible global function definition for ‘curve’
    plot.parncpt: no visible global function definition for ‘abline’
    plot.sparncpF: no visible global function definition for ‘par’
    plot.sparncpF: no visible global function definition for ‘hist’
    plot.sparncpF: no visible global function definition for ‘lines’
    plot.sparncpF: no visible global function definition for ‘curve’
    plot.sparncpF: no visible global function definition for ‘quantile’
    plot.sparncpF: no visible global function definition for ‘abline’
    plot.sparncpt: no visible global function definition for ‘par’
    plot.sparncpt: no visible global function definition for ‘hist’
    plot.sparncpt: no visible global function definition for ‘lines’
    plot.sparncpt: no visible global function definition for ‘curve’
    plot.sparncpt: no visible global function definition for ‘quantile’
    plot.sparncpt: no visible global function definition for ‘abline’
    plot.subex: no visible global function definition for ‘x11’
    plot.subex: no visible global function definition for ‘par’
    plot.subex: no visible global function definition for ‘hist’
    plot.subex: no visible global function definition for ‘box’
    plot.subex: no visible global function definition for ‘lines’
    plot.subex: no visible global function definition for ‘mtext’
    plot.subex: no visible global function definition for ‘axis’
    plot.subex: no visible global function definition for ‘title’
    print.subex: no visible global function definition for ‘quantile’
    pt.sad: no visible global function definition for ‘pnorm’
    pt.sad: no visible global function definition for ‘dnorm’
    sim.dat: no visible binding for global variable ‘rnorm’
    sim.dat : <anonymous>: no visible global function definition for
     ‘rnorm’
    sparncpF.parncpF: no visible global function definition for ‘optimize’
    sparncpt.parncpt: no visible global function definition for ‘optimize’
    subt : histf1.stat: no visible global function definition for ‘qt’
    znormix: no visible global function definition for ‘qnorm’
    znormix: no visible global function definition for ‘var’
    znormix: no visible global function definition for ‘quantile’
    znormix: no visible global function definition for ‘sd’
    znormix: no visible global function definition for ‘dnorm’
    
    Found the following assignments to the global environment:
    File ‘pi0/R/cond.cdf.R’:
     assign(".pi0cdfp", hiddenEnv, envir = globalenv())
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang

Version: 1.3-250
Check: Rd line widths
Result: NOTE
    Rd file 'combn2R.Rd':
     \examples lines wider than 100 characters:
     combn2R(1:4*2,2,5,1,R=5, sample.method="diff2") ### no common samples, even considering only one group
    
    Rd file 'nparncp.Rd':
     \usage lines wider than 90 characters:
     nparncpt.sqp(tstat, df, penalty=c('3rd.deriv','2nd.deriv','1st.deriv'), lambdas=10^seq(-1,5,by=1),
     starts, IC=c('BIC','CAIC','HQIC','AIC'), K=100, bounds=quantile(tstat,c(.01,.99)),
     solver=c('solve.QP','lsei','ipop','LowRankQP'),plotit=FALSE, verbose=FALSE, approx.hess=TRUE, ... )
    
    Rd file 'pt.sad.Rd':
     \usage lines wider than 90 characters:
     dt.sad(x, df, ncp = 0, log = FALSE, normalize = c("approximate", "derivative", "integral", "none"), epsilon = 1e-04)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.3-250
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘OCplus’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 1.3-250
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘plot.subex’
    Found the platform-specific device:
     ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    nparncpF.sqp : sqp: no visible global function definition for
     ‘LowRankQP’
    nparncpp: no visible global function definition for ‘LowRankQP’
    nparncpt.sqp : sqp: no visible global function definition for
     ‘LowRankQP’
Flavors: r-devel-linux-x86_64-fedora-gcc, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.3-250
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘plot.subex’
    Found the platform-specific device:
     ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    nparncpF.sqp : sqp: no visible global function definition for
     ‘LowRankQP’
    nparncpp: no visible global function definition for ‘LowRankQP’
    nparncpt.sqp : sqp: no visible global function definition for
     ‘LowRankQP’
    
    Found the following assignments to the global environment:
    File ‘pi0/R/cond.cdf.R’:
     assign(".pi0cdfp", hiddenEnv, envir = globalenv())
Flavors: r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.3-250
Check: R code for possible problems
Result: NOTE
    agjack.pi0: no visible global function definition for 'aggregate'
    cond.cdf: no visible global function definition for 'qnorm'
    cond.cdf: no visible global function definition for 'pnorm'
    cond.cdf: no visible global function definition for 'qt'
    cond.cdf: no visible global function definition for 'pt'
    convest: no visible global function definition for 'points'
    convest: no visible global function definition for 'approxfun'
    dFsnc.mix: no visible global function definition for 'df'
    discTMix : ff: no visible global function definition for 'pt'
    discTMix: no visible global function definition for 'optim'
    dncp.nparncpF : d.ncp : z: no visible global function definition for
     'dchisq'
    dncp.nparncpt : d.ncp: no visible global function definition for
     'dnorm'
    dncp.parncpF : ans: no visible global function definition for 'dchisq'
    dncp.parncpt : ans: no visible global function definition for 'dnorm'
    dt.int2: no visible global function definition for 'dt'
    dt.lap: no visible global function definition for 'pnorm'
    dt.sad: no visible global function definition for 'dnorm'
    dt.sad: no visible global function definition for 'dt'
    dt.sad: no visible global function definition for 'integrate'
    dtn.mix: no visible global function definition for 'dnorm'
    dtn.mix: no visible global function definition for 'dt'
    dtn.mix: no visible global function definition for 'pnorm'
    extrp.pi0: no visible binding for global variable 'start'
    extrp.pi0.both: no visible global function definition for 'optimize'
    extrp.pi0.both.gam2 : f.obj: no visible global function definition for
     'optimize'
    extrp.pi0.both.gam2: no visible global function definition for
     'optimize'
    extrp.pi0.gam2: no visible global function definition for 'optimize'
    extrp.pi0.rate: no visible global function definition for 'optimize'
    extrp.pi0.rate.gam2 : f.obj: no visible global function definition for
     'optimize'
    extrp.pi0.rate.gam2: no visible global function definition for
     'optimize'
    extrp.pi0.slope.gam2: no visible global function definition for
     'optimize'
    fitted.discTMix: no visible global function definition for 'dt'
    fitted.nparncpF: no visible global function definition for 'df'
    fitted.nparncpt: no visible global function definition for 'dt'
    fitted.parncpF: no visible global function definition for 'df'
    fitted.parncpt: no visible global function definition for 'dt'
    histf1 : ff: no visible global function definition for 'hist'
    histf1: no visible global function definition for 'qnorm'
    histf1: no visible global function definition for 'nclass.Sturges'
    histf1: no visible global function definition for 'pnorm'
    histf1: no visible global function definition for 'nclass.scott'
    histf1: no visible global function definition for 'nclass.FD'
    histf1: no visible global function definition for 'hist'
    histf1: no visible global function definition for 'abline'
    lfdr.discTMix: no visible global function definition for 'dt'
    lfdr.nparncpt: no visible global function definition for 'dt'
    lfdr.parncpt: no visible global function definition for 'dt'
    lfdr.sparncpt: no visible global function definition for 'dt'
    mTruncNorm: no visible global function definition for 'pnorm'
    mTruncNorm: no visible global function definition for 'integrate'
    marginal.dt.nparncpt : single.df.ans: no visible global function
     definition for 'dt'
    marginal.dt.parncpt : single.df.ans: no visible global function
     definition for 'dt'
    matrix.t.test: no visible global function definition for 'pt'
    momeff.nonzeromean: no visible global function definition for
     'quantile'
    momeff.nonzeromean : <anonymous>: no visible global function definition
     for 'dt'
    momeff.nonzeromean: no visible global function definition for 'dt'
    momeff.nonzeromean: no visible global function definition for 'pnorm'
    momeff.nonzeromean: no visible global function definition for
     'optimize'
    momeff.nonzeromean: no visible global function definition for 'pt'
    momeff.zeromean: no visible global function definition for 'optimize'
    nparncpF.sqp: no visible global function definition for 'quantile'
    nparncpF.sqp: no visible global function definition for 'optimize'
    nparncpF.sqp : <anonymous>: no visible global function definition for
     'qchisq'
    nparncpF.sqp: no visible global function definition for 'df'
    nparncpF.sqp: no visible global function definition for 'as'
    nparncpF.sqp : <anonymous>: no visible global function definition for
     'dchisq'
    nparncpF.sqp : hess.NPLL: no visible global function definition for
     'as'
    nparncpF.sqp : sqp: no visible global function definition for
     'LowRankQP'
    nparncpF.sqp: no visible global function definition for 'sd'
    nparncpp: no visible global function definition for 'install.packages'
    nparncpp: no visible global function definition for 'hist'
    nparncpp: no visible global function definition for 'LowRankQP'
    nparncpp: no visible global function definition for 'approxfun'
    nparncpp : FIDR: no visible global function definition for 'approx'
    nparncpt.sqp: no visible global function definition for 'quantile'
    nparncpt.sqp: no visible global function definition for 'dt'
    nparncpt.sqp: no visible global function definition for 'as'
    nparncpt.sqp : hess.NPLL: no visible global function definition for
     'as'
    nparncpt.sqp : adjust.pi0: no visible global function definition for
     'optimize'
    nparncpt.sqp : sqp: no visible global function definition for
     'LowRankQP'
    nparncpt.sqp: no visible global function definition for 'sd'
    parncpF.lbfgsb.central: no visible global function definition for 'df'
    parncpF.lbfgsb.central : obj: no visible global function definition for
     'df'
    parncpF.lbfgsb.central: no visible global function definition for
     'optim'
    parncpF.lbfgsb.noncentral: no visible global function definition for
     'df'
    parncpF.lbfgsb.noncentral: no visible global function definition for
     'optim'
    parncpF.unconstrained.central: no visible global function definition
     for 'make.link'
    parncpF.unconstrained.central: no visible global function definition
     for 'df'
    parncpF.unconstrained.central : obj: no visible global function
     definition for 'df'
    parncpF.unconstrained.central: no visible global function definition
     for 'optim'
    parncpF.unconstrained.noncentral: no visible global function definition
     for 'make.link'
    parncpF.unconstrained.noncentral: no visible global function definition
     for 'df'
    parncpF.unconstrained.noncentral: no visible global function definition
     for 'optim'
    parncpt.bfgs.0mean: no visible global function definition for 'dt'
    parncpt.bfgs.0mean : obj: no visible global function definition for
     'dt'
    parncpt.bfgs.0mean : deriv.0mean: no visible global function definition
     for 'dt'
    parncpt.bfgs.0mean: no visible global function definition for 'optim'
    parncpt.bfgs.non0mean: no visible global function definition for 'dt'
    parncpt.bfgs.non0mean: no visible global function definition for
     'optim'
    parncpt.bfgs.non0mean: no visible global function definition for
     'nlminb'
    parncpt.momeff: no visible global function definition for 'quantile'
    parncpt.momeff : <anonymous>: no visible global function definition for
     'dt'
    parncpt.momeff: no visible global function definition for 'dt'
    parncpt.momeff: no visible global function definition for 'pnorm'
    pavaf1: no visible global function definition for 'qnorm'
    pavaf1: no visible global function definition for 'nclass.Sturges'
    pavaf1: no visible global function definition for 'pnorm'
    pavaf1: no visible global function definition for 'nclass.scott'
    pavaf1: no visible global function definition for 'nclass.FD'
    pavaf1: no visible global function definition for 'hist'
    pavaf1: no visible global function definition for 'box'
    pavaf1: no visible global function definition for 'lines'
    pavaf1: no visible global function definition for 'abline'
    pdf.dist: no visible global function definition for 'integrate'
    plot.extrpi0: no visible global function definition for 'persp'
    plot.extrpi0: no visible global function definition for 'points'
    plot.extrpi0: no visible global function definition for 'trans3d'
    plot.nparncpF: no visible global function definition for 'par'
    plot.nparncpF: no visible global function definition for 'lines'
    plot.nparncpF: no visible global function definition for 'abline'
    plot.nparncpF : d.ncp : z: no visible global function definition for
     'dchisq'
    plot.nparncpF: no visible global function definition for 'curve'
    plot.nparncpF: no visible global function definition for 'rug'
    plot.nparncpt: no visible global function definition for 'par'
    plot.nparncpt: no visible global function definition for 'lines'
    plot.nparncpt: no visible global function definition for 'abline'
    plot.nparncpt: no visible global function definition for 'title'
    plot.nparncpt : d.ncp: no visible global function definition for
     'dnorm'
    plot.nparncpt: no visible global function definition for 'curve'
    plot.nparncpt: no visible global function definition for 'rug'
    plot.parncpF: no visible global function definition for 'par'
    plot.parncpF: no visible global function definition for 'hist'
    plot.parncpF: no visible global function definition for 'lines'
    plot.parncpF : d.ncp: no visible global function definition for
     'dchisq'
    plot.parncpF: no visible global function definition for 'curve'
    plot.parncpt: no visible global function definition for 'par'
    plot.parncpt: no visible global function definition for 'hist'
    plot.parncpt: no visible global function definition for 'lines'
    plot.parncpt : d.ncp: no visible global function definition for 'dnorm'
    plot.parncpt: no visible global function definition for 'curve'
    plot.parncpt: no visible global function definition for 'abline'
    plot.sparncpF: no visible global function definition for 'par'
    plot.sparncpF: no visible global function definition for 'hist'
    plot.sparncpF: no visible global function definition for 'lines'
    plot.sparncpF: no visible global function definition for 'curve'
    plot.sparncpF: no visible global function definition for 'quantile'
    plot.sparncpF: no visible global function definition for 'abline'
    plot.sparncpt: no visible global function definition for 'par'
    plot.sparncpt: no visible global function definition for 'hist'
    plot.sparncpt: no visible global function definition for 'lines'
    plot.sparncpt: no visible global function definition for 'curve'
    plot.sparncpt: no visible global function definition for 'quantile'
    plot.sparncpt: no visible global function definition for 'abline'
    plot.subex: no visible global function definition for 'x11'
    plot.subex: no visible global function definition for 'par'
    plot.subex: no visible global function definition for 'hist'
    plot.subex: no visible global function definition for 'box'
    plot.subex: no visible global function definition for 'lines'
    plot.subex: no visible global function definition for 'mtext'
    plot.subex: no visible global function definition for 'axis'
    plot.subex: no visible global function definition for 'title'
    print.subex: no visible global function definition for 'quantile'
    pt.sad: no visible global function definition for 'pnorm'
    pt.sad: no visible global function definition for 'dnorm'
    sim.dat: no visible binding for global variable 'rnorm'
    sim.dat : <anonymous>: no visible global function definition for
     'rnorm'
    sparncpF.parncpF: no visible global function definition for 'optimize'
    sparncpt.parncpt: no visible global function definition for 'optimize'
    subt : histf1.stat: no visible global function definition for 'qt'
    znormix: no visible global function definition for 'qnorm'
    znormix: no visible global function definition for 'var'
    znormix: no visible global function definition for 'quantile'
    znormix: no visible global function definition for 'sd'
    znormix: no visible global function definition for 'dnorm'
Flavor: r-devel-windows-ix86+x86_64

Version: 1.3-250
Check: R code for possible problems
Result: NOTE
    nparncpF.sqp : sqp: no visible global function definition for
     ‘LowRankQP’
    nparncpp: no visible global function definition for ‘LowRankQP’
    nparncpt.sqp : sqp: no visible global function definition for
     ‘LowRankQP’
Flavors: r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64