CRAN Package Check Results for Package picante

Last updated on 2015-07-05 22:47:38.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.6-2 3.63 52.66 56.29 NOTE
r-devel-linux-x86_64-debian-gcc 1.6-2 3.66 53.25 56.92 NOTE
r-devel-linux-x86_64-fedora-clang 1.6-2 115.00 NOTE
r-devel-linux-x86_64-fedora-gcc 1.6-2 109.43 NOTE
r-devel-osx-x86_64-clang 1.6-2 102.62 NOTE
r-devel-windows-ix86+x86_64 1.6-2 16.00 98.00 114.00 NOTE
r-patched-linux-x86_64 1.6-2 3.69 53.09 56.78 NOTE
r-patched-solaris-sparc 1.6-2 687.10 NOTE
r-patched-solaris-x86 1.6-2 161.50 NOTE
r-release-linux-x86_64 1.6-2 3.62 52.96 56.58 NOTE
r-release-osx-x86_64-mavericks 1.6-2 NOTE
r-release-windows-ix86+x86_64 1.6-2 17.00 150.00 167.00 NOTE
r-oldrel-windows-ix86+x86_64 1.6-2 21.00 191.00 212.00 NOTE

Check Details

Version: 1.6-2
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.6-2
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘brglm’ ‘quantreg’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.6-2
Check: R code for possible problems
Result: NOTE
    .binomial.pd: no visible global function definition for ‘dbinom’
    .edge.children.var: no visible global function definition for
     ‘aggregate’
    .edge.children.var.ub: no visible global function definition for
     ‘reorder’
    .edge.children.var.ub: no visible global function definition for
     ‘aggregate’
    .evolve.trait: no visible global function definition for ‘reorder’
    .evolve.trait: no visible global function definition for ‘rnorm’
    .evolve.trait: no visible global function definition for ‘runif’
    .evolve.trait: no visible global function definition for ‘rlnorm’
    .evolve.trait: no visible global function definition for ‘par’
    .evolve.trait: no visible global function definition for ‘dist’
    .evolve.trait: no visible global function definition for ‘rainbow’
    .evolve.trait: no visible global function definition for ‘plot’
    .evolve.trait: no visible global function definition for ‘lines’
    .phylosor.richness: no visible global function definition for ‘as.dist’
    Kcalc: no visible global function definition for ‘coef’
    color.plot.phylo: no visible global function definition for ‘rainbow’
    color.plot.phylo: no visible global function definition for ‘par’
    color.plot.phylo: no visible global function definition for ‘title’
    color.plot.phylo: no visible global function definition for ‘legend’
    comdist: no visible global function definition for ‘as.dist’
    comdistnt: no visible global function definition for ‘weighted.mean’
    comdistnt: no visible global function definition for ‘as.dist’
    comm.phylo.cor: no visible global function definition for ‘as.dist’
    comm.phylo.cor: no visible global function definition for ‘cophenetic’
    comm.phylo.cor: no visible global function definition for ‘cor’
    comm.phylo.cor: no visible global function definition for ‘cor.test’
    comm.phylo.qr: no visible global function definition for ‘as.dist’
    comm.phylo.qr: no visible global function definition for ‘cophenetic’
    comm.phylo.qr: no visible global function definition for ‘coef’
    comm.phylo.qr: no visible global function definition for ‘rq’
    comm.phylo.qr: no visible binding for global variable ‘na.omit’
    comm.phylo.qr: no visible global function definition for ‘plot’
    comm.phylo.qr: no visible global function definition for ‘abline’
    comm.phylo.qr: no visible global function definition for ‘legend’
    cor.table: no visible global function definition for ‘cor’
    cor.table: no visible global function definition for ‘pt’
    ead: no visible global function definition for ‘reorder’
    ead: no visible global function definition for ‘aggregate’
    expected.pd: no visible global function definition for ‘dbinom’
    match.comm.dist: no visible global function definition for ‘as.dist’
    mntd: no visible global function definition for ‘weighted.mean’
    mpd: no visible global function definition for ‘weighted.mean’
    pblm: no visible global function definition for ‘model.matrix’
    pblm: no visible global function definition for ‘cov’
    pblm: no visible global function definition for ‘is’
    pblm: no visible global function definition for ‘optim’
    pblm: no visible global function definition for ‘quantile’
    pblmpredict: no visible global function definition for ‘cor’
    pblmpredict: no visible global function definition for ‘is’
    pcd: no visible global function definition for ‘is’
    pcd: no visible global function definition for ‘as.dist’
    phylosignal: no visible global function definition for ‘sd’
    phylosor: no visible global function definition for ‘as.dist’
    phylostruct: no visible binding for global variable ‘quantile’
    phylostruct: no visible global function definition for ‘quantile’
    prune.missing: no visible global function definition for ‘na.omit’
    psc: no visible global function definition for ‘is’
    pse: no visible global function definition for ‘is’
    psv: no visible global function definition for ‘is’
    psv.spp: no visible global function definition for ‘is’
    raoD: no visible global function definition for ‘cophenetic’
    readsample: no visible global function definition for ‘read.table’
    ses.mntd: no visible binding for global variable ‘sd’
    ses.mpd: no visible binding for global variable ‘sd’
    ses.pd: no visible binding for global variable ‘sd’
    specaccum.psr: no visible binding for global variable ‘sd’
    species.dist: no visible global function definition for ‘as.dist’
    species.dist: no visible global function definition for ‘dist’
    sppregs: no visible global function definition for ‘is’
    sppregs: no visible global function definition for ‘glm’
    sppregs: no visible global function definition for ‘cor’
    sppregs: no visible global function definition for ‘brglm’
    sppregs.plot: no visible global function definition for ‘par’
    sppregs.plot: no visible global function definition for ‘plot’
    sppregs.plot: no visible global function definition for ‘cor’
    sppregs.plot: no visible global function definition for ‘abline’
    traitgram: no visible global function definition for ‘par’
    traitgram: no visible global function definition for ‘plot’
    traitgram: no visible global function definition for ‘axis’
    traitgram: no visible global function definition for ‘segments’
    traitgram: no visible global function definition for ‘text’
    unifrac: no visible global function definition for ‘as.dist’
    writesample: no visible global function definition for ‘write.table’
    writetraits: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     abline aggregate as.dist axis brglm coef cophenetic cor cor.test cov
     dbinom dist glm is legend lines model.matrix na.omit optim par plot
     pt quantile rainbow read.table reorder rlnorm rnorm rq runif sd
     segments text title weighted.mean write.table
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.6-2
Check: R code for possible problems
Result: NOTE
    comm.phylo.qr: no visible global function definition for ‘rq’
    sppregs: no visible global function definition for ‘brglm’
    Undefined global functions or variables:
     brglm rq
Flavor: r-devel-osx-x86_64-clang

Version: 1.6-2
Check: R code for possible problems
Result: NOTE
    comm.phylo.qr: no visible global function definition for ‘rq’
    sppregs: no visible global function definition for ‘brglm’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64