CRAN Package Check Results for Package pkgmaker

Last updated on 2014-04-25 05:47:21.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.20 1.70 30.61 32.30 NOTE
r-devel-linux-x86_64-debian-gcc 0.20 1.73 30.55 32.28 NOTE
r-devel-linux-x86_64-fedora-clang 0.20 65.28 NOTE
r-devel-linux-x86_64-fedora-gcc 0.20 63.32 NOTE
r-devel-osx-x86_64-clang 0.20 67.65 NOTE
r-devel-osx-x86_64-gcc 0.20 ERROR
r-devel-windows-ix86+x86_64 0.20 5.00 64.00 69.00 NOTE
r-patched-linux-x86_64 0.20 1.68 44.53 46.21 OK
r-patched-solaris-sparc 0.20 353.00 NOTE
r-patched-solaris-x86 0.20 83.10 NOTE
r-release-linux-ix86 0.20 3.00 56.00 59.00 NOTE
r-release-linux-x86_64 0.20 1.66 44.93 46.59 OK
r-release-osx-x86_64-mavericks 0.20 WARN
r-release-osx-x86_64-snowleopard 0.20 NOTE
r-release-windows-ix86+x86_64 0.20 5.00 69.00 74.00 OK
r-oldrel-windows-ix86+x86_64 0.20 6.00 65.00 71.00 OK

Check Details

Version: 0.20
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘ReportingTools’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-osx-x86_64-mavericks

Version: 0.20
Check: R code for possible problems
Result: NOTE
    write_PACKAGES_index: no visible global function definition for
     ‘HTMLReport’
    write_PACKAGES_index: no visible global function definition for
     ‘publish’
    write_PACKAGES_index: no visible global function definition for
     ‘finish’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-osx-x86_64-mavericks

Version: 0.20
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘devtools’ ‘knitr’ ‘ReportingTools’ ‘argparse’
    
    Files named as vignettes but with no recognized vignette engine:
     ‘inst/doc/pkgmaker-unitTests.Rnw’
     ‘inst/doc/pkgmaker.Rnw’
    (Is a VignetteBuilder field missing?)
Flavor: r-devel-osx-x86_64-gcc

Version: 0.20
Check: R code for possible problems
Result: NOTE
    CLIArgumentParser: no visible global function definition for
     ‘ArgumentParser’
    CLIArgumentParser: no visible global function definition for ‘proto’
    chunkOutputHook : <anonymous> : <anonymous>: no visible binding for
     global variable ‘knit_hooks’
    hook_backspace : <anonymous>: no visible binding for global variable
     ‘knit_hooks’
    knit_ex: no visible global function definition for ‘knit2html’
    knit_ex: no visible global function definition for ‘knit’
    latex_bibliography: no visible binding for global variable ‘knit_hooks’
    runVignette.rnw_knitr: no visible binding for global variable
     ‘opts_chunk’
    runVignette.rnw_knitr: no visible global function definition for
     ‘knit2pdf’
    runVignette.rnw_knitr: no visible global function definition for ‘knit’
    write_PACKAGES_index: no visible global function definition for
     ‘HTMLReport’
    write_PACKAGES_index: no visible global function definition for
     ‘publish’
    write_PACKAGES_index: no visible global function definition for
     ‘knit2html’
    write_PACKAGES_index: no visible global function definition for
     ‘finish’
Flavor: r-devel-osx-x86_64-gcc

Version: 0.20
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘argparse’, ‘devtools’, ‘knitr’
Flavor: r-devel-osx-x86_64-gcc

Version: 0.20
Check: examples
Result: ERROR
    Running examples in ‘pkgmaker-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: knit_ex
    > ### Title: Knitr Extensions
    > ### Aliases: hook_backspace hook_toggle hook_try knit_ex
    >
    > ### ** Examples
    >
    > ## Don't show:
    > # roxygen generated flag
    > options(R_CHECK_RUNNING_EXAMPLES_=TRUE)
    > ## End Don't show
    >
    > #----------
    > # knit_ex
    > #----------
    > library(knitr)
    Error in library(knitr) : there is no package called ‘knitr’
    Execution halted
Flavor: r-devel-osx-x86_64-gcc

Version: 0.20
Check: R code for possible problems
Result: NOTE
    Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
     namespace 'GenomicFeatures' 1.17.0 is already loaded, but >= 1.17.3 is required
    write_PACKAGES_index: no visible global function definition for
     'HTMLReport'
    write_PACKAGES_index: no visible global function definition for
     'publish'
    write_PACKAGES_index: no visible global function definition for
     'finish'
Flavor: r-devel-windows-ix86+x86_64

Version: 0.20
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning: running command 'kpsewhich framed.sty' had status 1
    Warning in test_latex_pkg("framed", system.file("misc", "framed.sty", package = "knitr")) :
     unable to find LaTeX package 'framed'; will use a copy from knitr
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'pkgmaker-unitTests.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `vmargin.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    n_test/pkgmaker/vignettes/pkgmaker-unitTests.tex:57: ==> Fatal error occurred,
     no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.20
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    3544416/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 0.20
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘ReportingTools’ ‘argparse’
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.20
Check: R code for possible problems
Result: NOTE
    CLIArgumentParser: no visible global function definition for
     ‘ArgumentParser’
    CLIArgumentParser: no visible global function definition for ‘proto’
    write_PACKAGES_index: no visible global function definition for
     ‘HTMLReport’
    write_PACKAGES_index: no visible global function definition for
     ‘publish’
    write_PACKAGES_index: no visible global function definition for
     ‘finish’
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.20
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘argparse’
Flavor: r-release-osx-x86_64-snowleopard