CRAN Package Check Results for Package plsRcox

Last updated on 2015-07-03 16:47:31.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7.2 7.81 107.00 114.81 NOTE
r-devel-linux-x86_64-debian-gcc 1.7.2 7.98 103.75 111.73 NOTE
r-devel-linux-x86_64-fedora-clang 1.7.2 231.83 NOTE
r-devel-linux-x86_64-fedora-gcc 1.7.2 217.15 NOTE
r-devel-osx-x86_64-clang 1.7.2 205.86 NOTE
r-devel-windows-ix86+x86_64 1.7.2 24.00 157.00 181.00 NOTE
r-patched-linux-x86_64 1.7.2 6.63 104.53 111.16 NOTE
r-patched-solaris-sparc 1.7.2 1395.40 NOTE
r-patched-solaris-x86 1.7.2 311.40 NOTE
r-release-linux-x86_64 1.7.2 6.56 107.92 114.48 NOTE
r-release-osx-x86_64-mavericks 1.7.2 OK
r-release-windows-ix86+x86_64 1.7.2 30.00 156.00 186.00 OK
r-oldrel-windows-ix86+x86_64 1.7.2 43.00 289.00 332.00 OK

Check Details

Version: 1.7.2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     coxDKpls2DR.default coxDKpls2DR.formula coxDKplsDR.default
     coxDKplsDR.formula coxDKsplsDR.default coxDKsplsDR.formula
     coxpls.default coxpls.formula coxpls2.default coxpls2.formula
     coxpls2DR.default coxpls2DR.formula coxpls3.default coxpls3.formula
     coxpls3DR.default coxpls3DR.formula coxplsDR.default coxplsDR.formula
     coxsplsDR.default coxsplsDR.formula larsDR_coxph.default
     larsDR_coxph.formula
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.7.2
Check: R code for possible problems
Result: NOTE
    DKplsRcoxmodel.default: no visible global function definition for
     ‘weighted.mean’
    DKplsRcoxmodel.default: no visible binding for global variable
     ‘weighted.mean’
    DKplsRcoxmodel.default: no visible global function definition for
     ‘as.formula’
    DKplsRcoxmodel.default: no visible global function definition for
     ‘head’
    DKplsRcoxmodel.formula: no visible global function definition for
     ‘model.response’
    DKplsRcoxmodel.formula: no visible global function definition for
     ‘is.empty.model’
    DKplsRcoxmodel.formula: no visible global function definition for
     ‘model.matrix’
    DKplsRcoxmodel.formula: no visible binding for global variable
     ‘contrasts’
    DKplsRcoxmodel.formula: no visible global function definition for
     ‘model.weights’
    coxDKpls2DR.default: no visible global function definition for ‘head’
    coxDKpls2DR.default: no visible global function definition for
     ‘as.formula’
    coxDKpls2DR.formula: no visible global function definition for
     ‘model.response’
    coxDKpls2DR.formula: no visible global function definition for
     ‘is.empty.model’
    coxDKpls2DR.formula: no visible global function definition for
     ‘model.matrix’
    coxDKpls2DR.formula: no visible binding for global variable ‘contrasts’
    coxDKpls2DR.formula: no visible global function definition for
     ‘model.weights’
    coxDKplsDR.default: no visible global function definition for ‘head’
    coxDKplsDR.default: no visible global function definition for
     ‘as.formula’
    coxDKplsDR.formula: no visible global function definition for
     ‘model.response’
    coxDKplsDR.formula: no visible global function definition for
     ‘is.empty.model’
    coxDKplsDR.formula: no visible global function definition for
     ‘model.matrix’
    coxDKplsDR.formula: no visible binding for global variable ‘contrasts’
    coxDKplsDR.formula: no visible global function definition for
     ‘model.weights’
    coxDKsplsDR.default: no visible global function definition for ‘head’
    coxDKsplsDR.default: no visible global function definition for
     ‘as.formula’
    coxDKsplsDR.formula: no visible global function definition for
     ‘model.response’
    coxDKsplsDR.formula: no visible global function definition for
     ‘is.empty.model’
    coxDKsplsDR.formula: no visible global function definition for
     ‘model.matrix’
    coxDKsplsDR.formula: no visible binding for global variable ‘contrasts’
    coxDKsplsDR.formula: no visible global function definition for
     ‘model.weights’
    coxpls.default: no visible global function definition for ‘head’
    coxpls.default: no visible global function definition for ‘as.formula’
    coxpls.formula: no visible global function definition for
     ‘model.response’
    coxpls.formula: no visible global function definition for
     ‘is.empty.model’
    coxpls.formula: no visible global function definition for
     ‘model.matrix’
    coxpls.formula: no visible binding for global variable ‘contrasts’
    coxpls.formula: no visible global function definition for
     ‘model.weights’
    coxpls2.default: no visible global function definition for ‘as.formula’
    coxpls2.default: no visible global function definition for ‘head’
    coxpls2.formula: no visible global function definition for
     ‘model.response’
    coxpls2.formula: no visible global function definition for
     ‘is.empty.model’
    coxpls2.formula: no visible global function definition for
     ‘model.matrix’
    coxpls2.formula: no visible binding for global variable ‘contrasts’
    coxpls2.formula: no visible global function definition for
     ‘model.weights’
    coxpls2DR.default: no visible global function definition for ‘head’
    coxpls2DR.default: no visible global function definition for
     ‘as.formula’
    coxpls2DR.formula: no visible global function definition for
     ‘model.response’
    coxpls2DR.formula: no visible global function definition for
     ‘is.empty.model’
    coxpls2DR.formula: no visible global function definition for
     ‘model.matrix’
    coxpls2DR.formula: no visible binding for global variable ‘contrasts’
    coxpls2DR.formula: no visible global function definition for
     ‘model.weights’
    coxpls3.default: no visible global function definition for ‘head’
    coxpls3.default: no visible global function definition for ‘as.formula’
    coxpls3.formula: no visible global function definition for
     ‘model.response’
    coxpls3.formula: no visible global function definition for
     ‘is.empty.model’
    coxpls3.formula: no visible global function definition for
     ‘model.matrix’
    coxpls3.formula: no visible binding for global variable ‘contrasts’
    coxpls3.formula: no visible global function definition for
     ‘model.weights’
    coxpls3DR.default: no visible global function definition for ‘head’
    coxpls3DR.default: no visible global function definition for
     ‘as.formula’
    coxpls3DR.formula: no visible global function definition for
     ‘model.response’
    coxpls3DR.formula: no visible global function definition for
     ‘is.empty.model’
    coxpls3DR.formula: no visible global function definition for
     ‘model.matrix’
    coxpls3DR.formula: no visible binding for global variable ‘contrasts’
    coxpls3DR.formula: no visible global function definition for
     ‘model.weights’
    coxplsDR.default: no visible global function definition for ‘head’
    coxplsDR.default: no visible global function definition for
     ‘as.formula’
    coxplsDR.formula: no visible global function definition for
     ‘model.response’
    coxplsDR.formula: no visible global function definition for
     ‘is.empty.model’
    coxplsDR.formula: no visible global function definition for
     ‘model.matrix’
    coxplsDR.formula: no visible binding for global variable ‘contrasts’
    coxplsDR.formula: no visible global function definition for
     ‘model.weights’
    coxsplsDR.default: no visible global function definition for ‘head’
    coxsplsDR.default: no visible global function definition for
     ‘as.formula’
    coxsplsDR.formula: no visible global function definition for
     ‘model.response’
    coxsplsDR.formula: no visible global function definition for
     ‘is.empty.model’
    coxsplsDR.formula: no visible global function definition for
     ‘model.matrix’
    coxsplsDR.formula: no visible binding for global variable ‘contrasts’
    coxsplsDR.formula: no visible global function definition for
     ‘model.weights’
    cv.autoplsRcox: no visible binding for global variable ‘var’
    cv.autoplsRcox: no visible global function definition for ‘dev.new’
    cv.autoplsRcox: no visible global function definition for ‘layout’
    cv.autoplsRcox: no visible global function definition for ‘abline’
    cv.autoplsRcox: no visible global function definition for ‘axis’
    cv.autoplsRcox: no visible global function definition for ‘segments’
    cv.coxDKplsDR: no visible binding for global variable ‘var’
    cv.coxDKplsDR: no visible global function definition for ‘dev.new’
    cv.coxDKplsDR: no visible global function definition for ‘layout’
    cv.coxDKplsDR: no visible global function definition for ‘abline’
    cv.coxDKplsDR: no visible global function definition for ‘axis’
    cv.coxDKplsDR: no visible global function definition for ‘segments’
    cv.coxDKsplsDR: no visible binding for global variable ‘var’
    cv.coxDKsplsDR: no visible global function definition for ‘dev.new’
    cv.coxDKsplsDR: no visible global function definition for ‘layout’
    cv.coxDKsplsDR: no visible global function definition for ‘abline’
    cv.coxDKsplsDR: no visible global function definition for ‘axis’
    cv.coxDKsplsDR: no visible global function definition for ‘segments’
    cv.coxpls: no visible binding for global variable ‘var’
    cv.coxpls: no visible global function definition for ‘dev.new’
    cv.coxpls: no visible global function definition for ‘layout’
    cv.coxpls: no visible global function definition for ‘abline’
    cv.coxpls: no visible global function definition for ‘axis’
    cv.coxpls: no visible global function definition for ‘segments’
    cv.coxplsDR: no visible binding for global variable ‘var’
    cv.coxplsDR: no visible global function definition for ‘dev.new’
    cv.coxplsDR: no visible global function definition for ‘layout’
    cv.coxplsDR: no visible global function definition for ‘abline’
    cv.coxplsDR: no visible global function definition for ‘axis’
    cv.coxplsDR: no visible global function definition for ‘segments’
    cv.coxsplsDR: no visible binding for global variable ‘var’
    cv.coxsplsDR: no visible global function definition for ‘dev.new’
    cv.coxsplsDR: no visible global function definition for ‘layout’
    cv.coxsplsDR: no visible global function definition for ‘abline’
    cv.coxsplsDR: no visible global function definition for ‘axis’
    cv.coxsplsDR: no visible global function definition for ‘segments’
    cv.larsDR: no visible global function definition for ‘residuals’
    cv.larsDR: no visible binding for global variable ‘var’
    cv.larsDR: no visible global function definition for ‘dev.new’
    cv.larsDR: no visible global function definition for ‘layout’
    cv.larsDR: no visible global function definition for ‘abline’
    cv.larsDR: no visible global function definition for ‘axis’
    cv.larsDR: no visible global function definition for ‘segments’
    cv.plsRcox: no visible binding for global variable ‘var’
    cv.plsRcox: no visible global function definition for ‘dev.new’
    cv.plsRcox: no visible global function definition for ‘layout’
    cv.plsRcox: no visible global function definition for ‘abline’
    cv.plsRcox: no visible global function definition for ‘axis’
    cv.plsRcox: no visible global function definition for ‘segments’
    getIndic: no visible global function definition for ‘var’
    getIndic: no visible global function definition for ‘layout’
    getIndic: no visible global function definition for ‘abline’
    getIndic: no visible global function definition for ‘complete.cases’
    getIndicCV: no visible global function definition for ‘layout’
    getIndicCV: no visible global function definition for ‘abline’
    getIndicCV: no visible global function definition for ‘complete.cases’
    getIndicCViAUCSH: no visible global function definition for ‘abline’
    getIndicCViAUCSurvROCTest: no visible global function definition for
     ‘complete.cases’
    getIndicCViAUCSurvROCTest: no visible global function definition for
     ‘abline’
    larsDR_coxph.default: no visible global function definition for ‘head’
    larsDR_coxph.default: no visible global function definition for
     ‘as.formula’
    larsDR_coxph.formula: no visible global function definition for
     ‘model.response’
    larsDR_coxph.formula: no visible global function definition for
     ‘is.empty.model’
    larsDR_coxph.formula: no visible global function definition for
     ‘model.matrix’
    larsDR_coxph.formula: no visible binding for global variable
     ‘contrasts’
    larsDR_coxph.formula: no visible global function definition for
     ‘model.weights’
    plsRcoxmodel.default: no visible global function definition for
     ‘weighted.mean’
    plsRcoxmodel.default: no visible binding for global variable
     ‘weighted.mean’
    plsRcoxmodel.default: no visible global function definition for ‘head’
    plsRcoxmodel.default: no visible global function definition for
     ‘as.formula’
    plsRcoxmodel.default: no visible global function definition for
     ‘extractAIC’
    plsRcoxmodel.default: no visible global function definition for
     ‘residuals’
    plsRcoxmodel.formula: no visible global function definition for
     ‘model.response’
    plsRcoxmodel.formula: no visible global function definition for
     ‘is.empty.model’
    plsRcoxmodel.formula: no visible global function definition for
     ‘model.matrix’
    plsRcoxmodel.formula: no visible binding for global variable
     ‘contrasts’
    plsRcoxmodel.formula: no visible global function definition for
     ‘model.weights’
    predict.plsRcoxmodel: no visible global function definition for
     ‘is.empty.model’
    predict.plsRcoxmodel: no visible global function definition for
     ‘model.matrix’
    predict.plsRcoxmodel: no visible binding for global variable
     ‘contrasts’
    predict.plsRcoxmodel: no visible global function definition for
     ‘model.weights’
    spls.dv: no visible global function definition for ‘median’
    spls.dv: no visible global function definition for ‘uniroot’
    Undefined global functions or variables:
     abline as.formula axis complete.cases contrasts dev.new extractAIC
     head is.empty.model layout median model.matrix model.response
     model.weights residuals segments uniroot var weighted.mean
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64