CRAN Package Check Results for Package plsRcox

Last updated on 2015-09-04 14:47:10.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7.2 6.69 107.35 114.04 NOTE
r-devel-linux-x86_64-debian-gcc 1.7.2 6.64 103.75 110.39 NOTE
r-devel-linux-x86_64-fedora-clang 1.7.2 230.24 NOTE
r-devel-linux-x86_64-fedora-gcc 1.7.2 217.38 NOTE
r-devel-osx-x86_64-clang 1.7.2 192.17 NOTE
r-devel-windows-ix86+x86_64 1.7.2 24.00 155.00 179.00 NOTE
r-patched-linux-x86_64 1.7.2 7.18 109.76 116.94 NOTE
r-patched-solaris-sparc 1.7.2 1405.00 NOTE
r-patched-solaris-x86 1.7.2 333.20 NOTE
r-release-linux-x86_64 1.7.2 7.00 114.94 121.94 NOTE
r-release-osx-x86_64-mavericks 1.7.2 OK
r-release-windows-ix86+x86_64 1.7.2 30.00 180.00 210.00 OK
r-oldrel-windows-ix86+x86_64 1.7.2 40.00 427.00 467.00 OK

Check Details

Version: 1.7.2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     coxDKpls2DR.default coxDKpls2DR.formula coxDKplsDR.default
     coxDKplsDR.formula coxDKsplsDR.default coxDKsplsDR.formula
     coxpls.default coxpls.formula coxpls2.default coxpls2.formula
     coxpls2DR.default coxpls2DR.formula coxpls3.default coxpls3.formula
     coxpls3DR.default coxpls3DR.formula coxplsDR.default coxplsDR.formula
     coxsplsDR.default coxsplsDR.formula larsDR_coxph.default
     larsDR_coxph.formula
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.7.2
Check: R code for possible problems
Result: NOTE
    DKplsRcoxmodel.default: no visible global function definition for
     ‘weighted.mean’
    DKplsRcoxmodel.default: no visible binding for global variable
     ‘weighted.mean’
    DKplsRcoxmodel.default: no visible global function definition for
     ‘as.formula’
    DKplsRcoxmodel.default: no visible global function definition for
     ‘head’
    DKplsRcoxmodel.formula: no visible global function definition for
     ‘model.response’
    DKplsRcoxmodel.formula: no visible global function definition for
     ‘is.empty.model’
    DKplsRcoxmodel.formula: no visible global function definition for
     ‘model.matrix’
    DKplsRcoxmodel.formula: no visible binding for global variable
     ‘contrasts’
    DKplsRcoxmodel.formula: no visible global function definition for
     ‘model.weights’
    coxDKpls2DR.default: no visible global function definition for ‘head’
    coxDKpls2DR.default: no visible global function definition for
     ‘as.formula’
    coxDKpls2DR.formula: no visible global function definition for
     ‘model.response’
    coxDKpls2DR.formula: no visible global function definition for
     ‘is.empty.model’
    coxDKpls2DR.formula: no visible global function definition for
     ‘model.matrix’
    coxDKpls2DR.formula: no visible binding for global variable ‘contrasts’
    coxDKpls2DR.formula: no visible global function definition for
     ‘model.weights’
    coxDKplsDR.default: no visible global function definition for ‘head’
    coxDKplsDR.default: no visible global function definition for
     ‘as.formula’
    coxDKplsDR.formula: no visible global function definition for
     ‘model.response’
    coxDKplsDR.formula: no visible global function definition for
     ‘is.empty.model’
    coxDKplsDR.formula: no visible global function definition for
     ‘model.matrix’
    coxDKplsDR.formula: no visible binding for global variable ‘contrasts’
    coxDKplsDR.formula: no visible global function definition for
     ‘model.weights’
    coxDKsplsDR.default: no visible global function definition for ‘head’
    coxDKsplsDR.default: no visible global function definition for
     ‘as.formula’
    coxDKsplsDR.formula: no visible global function definition for
     ‘model.response’
    coxDKsplsDR.formula: no visible global function definition for
     ‘is.empty.model’
    coxDKsplsDR.formula: no visible global function definition for
     ‘model.matrix’
    coxDKsplsDR.formula: no visible binding for global variable ‘contrasts’
    coxDKsplsDR.formula: no visible global function definition for
     ‘model.weights’
    coxpls.default: no visible global function definition for ‘head’
    coxpls.default: no visible global function definition for ‘as.formula’
    coxpls.formula: no visible global function definition for
     ‘model.response’
    coxpls.formula: no visible global function definition for
     ‘is.empty.model’
    coxpls.formula: no visible global function definition for
     ‘model.matrix’
    coxpls.formula: no visible binding for global variable ‘contrasts’
    coxpls.formula: no visible global function definition for
     ‘model.weights’
    coxpls2.default: no visible global function definition for ‘as.formula’
    coxpls2.default: no visible global function definition for ‘head’
    coxpls2.formula: no visible global function definition for
     ‘model.response’
    coxpls2.formula: no visible global function definition for
     ‘is.empty.model’
    coxpls2.formula: no visible global function definition for
     ‘model.matrix’
    coxpls2.formula: no visible binding for global variable ‘contrasts’
    coxpls2.formula: no visible global function definition for
     ‘model.weights’
    coxpls2DR.default: no visible global function definition for ‘head’
    coxpls2DR.default: no visible global function definition for
     ‘as.formula’
    coxpls2DR.formula: no visible global function definition for
     ‘model.response’
    coxpls2DR.formula: no visible global function definition for
     ‘is.empty.model’
    coxpls2DR.formula: no visible global function definition for
     ‘model.matrix’
    coxpls2DR.formula: no visible binding for global variable ‘contrasts’
    coxpls2DR.formula: no visible global function definition for
     ‘model.weights’
    coxpls3.default: no visible global function definition for ‘head’
    coxpls3.default: no visible global function definition for ‘as.formula’
    coxpls3.formula: no visible global function definition for
     ‘model.response’
    coxpls3.formula: no visible global function definition for
     ‘is.empty.model’
    coxpls3.formula: no visible global function definition for
     ‘model.matrix’
    coxpls3.formula: no visible binding for global variable ‘contrasts’
    coxpls3.formula: no visible global function definition for
     ‘model.weights’
    coxpls3DR.default: no visible global function definition for ‘head’
    coxpls3DR.default: no visible global function definition for
     ‘as.formula’
    coxpls3DR.formula: no visible global function definition for
     ‘model.response’
    coxpls3DR.formula: no visible global function definition for
     ‘is.empty.model’
    coxpls3DR.formula: no visible global function definition for
     ‘model.matrix’
    coxpls3DR.formula: no visible binding for global variable ‘contrasts’
    coxpls3DR.formula: no visible global function definition for
     ‘model.weights’
    coxplsDR.default: no visible global function definition for ‘head’
    coxplsDR.default: no visible global function definition for
     ‘as.formula’
    coxplsDR.formula: no visible global function definition for
     ‘model.response’
    coxplsDR.formula: no visible global function definition for
     ‘is.empty.model’
    coxplsDR.formula: no visible global function definition for
     ‘model.matrix’
    coxplsDR.formula: no visible binding for global variable ‘contrasts’
    coxplsDR.formula: no visible global function definition for
     ‘model.weights’
    coxsplsDR.default: no visible global function definition for ‘head’
    coxsplsDR.default: no visible global function definition for
     ‘as.formula’
    coxsplsDR.formula: no visible global function definition for
     ‘model.response’
    coxsplsDR.formula: no visible global function definition for
     ‘is.empty.model’
    coxsplsDR.formula: no visible global function definition for
     ‘model.matrix’
    coxsplsDR.formula: no visible binding for global variable ‘contrasts’
    coxsplsDR.formula: no visible global function definition for
     ‘model.weights’
    cv.autoplsRcox: no visible binding for global variable ‘var’
    cv.autoplsRcox: no visible global function definition for ‘dev.new’
    cv.autoplsRcox: no visible global function definition for ‘layout’
    cv.autoplsRcox: no visible global function definition for ‘abline’
    cv.autoplsRcox: no visible global function definition for ‘axis’
    cv.autoplsRcox: no visible global function definition for ‘segments’
    cv.coxDKplsDR: no visible binding for global variable ‘var’
    cv.coxDKplsDR: no visible global function definition for ‘dev.new’
    cv.coxDKplsDR: no visible global function definition for ‘layout’
    cv.coxDKplsDR: no visible global function definition for ‘abline’
    cv.coxDKplsDR: no visible global function definition for ‘axis’
    cv.coxDKplsDR: no visible global function definition for ‘segments’
    cv.coxDKsplsDR: no visible binding for global variable ‘var’
    cv.coxDKsplsDR: no visible global function definition for ‘dev.new’
    cv.coxDKsplsDR: no visible global function definition for ‘layout’
    cv.coxDKsplsDR: no visible global function definition for ‘abline’
    cv.coxDKsplsDR: no visible global function definition for ‘axis’
    cv.coxDKsplsDR: no visible global function definition for ‘segments’
    cv.coxpls: no visible binding for global variable ‘var’
    cv.coxpls: no visible global function definition for ‘dev.new’
    cv.coxpls: no visible global function definition for ‘layout’
    cv.coxpls: no visible global function definition for ‘abline’
    cv.coxpls: no visible global function definition for ‘axis’
    cv.coxpls: no visible global function definition for ‘segments’
    cv.coxplsDR: no visible binding for global variable ‘var’
    cv.coxplsDR: no visible global function definition for ‘dev.new’
    cv.coxplsDR: no visible global function definition for ‘layout’
    cv.coxplsDR: no visible global function definition for ‘abline’
    cv.coxplsDR: no visible global function definition for ‘axis’
    cv.coxplsDR: no visible global function definition for ‘segments’
    cv.coxsplsDR: no visible binding for global variable ‘var’
    cv.coxsplsDR: no visible global function definition for ‘dev.new’
    cv.coxsplsDR: no visible global function definition for ‘layout’
    cv.coxsplsDR: no visible global function definition for ‘abline’
    cv.coxsplsDR: no visible global function definition for ‘axis’
    cv.coxsplsDR: no visible global function definition for ‘segments’
    cv.larsDR: no visible global function definition for ‘residuals’
    cv.larsDR: no visible binding for global variable ‘var’
    cv.larsDR: no visible global function definition for ‘dev.new’
    cv.larsDR: no visible global function definition for ‘layout’
    cv.larsDR: no visible global function definition for ‘abline’
    cv.larsDR: no visible global function definition for ‘axis’
    cv.larsDR: no visible global function definition for ‘segments’
    cv.plsRcox: no visible binding for global variable ‘var’
    cv.plsRcox: no visible global function definition for ‘dev.new’
    cv.plsRcox: no visible global function definition for ‘layout’
    cv.plsRcox: no visible global function definition for ‘abline’
    cv.plsRcox: no visible global function definition for ‘axis’
    cv.plsRcox: no visible global function definition for ‘segments’
    getIndic: no visible global function definition for ‘var’
    getIndic: no visible global function definition for ‘layout’
    getIndic: no visible global function definition for ‘abline’
    getIndic: no visible global function definition for ‘complete.cases’
    getIndicCV: no visible global function definition for ‘layout’
    getIndicCV: no visible global function definition for ‘abline’
    getIndicCV: no visible global function definition for ‘complete.cases’
    getIndicCViAUCSH: no visible global function definition for ‘abline’
    getIndicCViAUCSurvROCTest: no visible global function definition for
     ‘complete.cases’
    getIndicCViAUCSurvROCTest: no visible global function definition for
     ‘abline’
    larsDR_coxph.default: no visible global function definition for ‘head’
    larsDR_coxph.default: no visible global function definition for
     ‘as.formula’
    larsDR_coxph.formula: no visible global function definition for
     ‘model.response’
    larsDR_coxph.formula: no visible global function definition for
     ‘is.empty.model’
    larsDR_coxph.formula: no visible global function definition for
     ‘model.matrix’
    larsDR_coxph.formula: no visible binding for global variable
     ‘contrasts’
    larsDR_coxph.formula: no visible global function definition for
     ‘model.weights’
    plsRcoxmodel.default: no visible global function definition for
     ‘weighted.mean’
    plsRcoxmodel.default: no visible binding for global variable
     ‘weighted.mean’
    plsRcoxmodel.default: no visible global function definition for ‘head’
    plsRcoxmodel.default: no visible global function definition for
     ‘as.formula’
    plsRcoxmodel.default: no visible global function definition for
     ‘extractAIC’
    plsRcoxmodel.default: no visible global function definition for
     ‘residuals’
    plsRcoxmodel.formula: no visible global function definition for
     ‘model.response’
    plsRcoxmodel.formula: no visible global function definition for
     ‘is.empty.model’
    plsRcoxmodel.formula: no visible global function definition for
     ‘model.matrix’
    plsRcoxmodel.formula: no visible binding for global variable
     ‘contrasts’
    plsRcoxmodel.formula: no visible global function definition for
     ‘model.weights’
    predict.plsRcoxmodel: no visible global function definition for
     ‘is.empty.model’
    predict.plsRcoxmodel: no visible global function definition for
     ‘model.matrix’
    predict.plsRcoxmodel: no visible binding for global variable
     ‘contrasts’
    predict.plsRcoxmodel: no visible global function definition for
     ‘model.weights’
    spls.dv: no visible global function definition for ‘median’
    spls.dv: no visible global function definition for ‘uniroot’
    Undefined global functions or variables:
     abline as.formula axis complete.cases contrasts dev.new extractAIC
     head is.empty.model layout median model.matrix model.response
     model.weights residuals segments uniroot var weighted.mean
    Consider adding
     importFrom("grDevices", "dev.new")
     importFrom("graphics", "abline", "axis", "layout", "segments")
     importFrom("stats", "as.formula", "complete.cases", "contrasts",
     "extractAIC", "is.empty.model", "median", "model.matrix",
     "model.response", "model.weights", "residuals", "uniroot",
     "var", "weighted.mean")
     importFrom("utils", "head")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64