CRAN Package Check Results for Package pmc

Last updated on 2016-09-30 11:48:46.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.2 1.77 711.41 713.18 WARN
r-devel-linux-x86_64-debian-gcc 1.0.2 1.79 620.47 622.26 WARN
r-devel-linux-x86_64-fedora-clang 1.0.2 1186.66 WARN
r-devel-linux-x86_64-fedora-gcc 1.0.2 1038.82 WARN
r-devel-macos-x86_64-clang 1.0.2 414.22 WARN --no-build-vignettes
r-devel-windows-ix86+x86_64 1.0.2 14.00 107.00 121.00 ERROR --no-vignettes
r-patched-linux-x86_64 1.0.2 1.73 664.51 666.23 OK
r-patched-solaris-sparc 1.0.2 6030.60 OK
r-patched-solaris-x86 1.0.2 1349.40 OK
r-release-linux-x86_64 1.0.2 1.76 641.30 643.06 OK
r-release-osx-x86_64-mavericks 1.0.2 FAIL
r-release-windows-ix86+x86_64 1.0.2 6.00 193.00 199.00 OK --no-vignettes
r-oldrel-windows-ix86+x86_64 1.0.2 10.00 144.00 154.00 OK --no-vignettes

Check Details

Version: 1.0.2
Check: files in ‘vignettes’
Result: WARN
    Files in the 'vignettes' directory newer than all files in 'inst/doc':
     ‘pmc_tutorial.Rmd’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.2
Flags: --no-build-vignettes
Check: files in ‘vignettes’
Result: WARN
    Files in the 'vignettes' directory newer than all files in 'inst/doc':
     ‘pmc_tutorial.Rmd’
Flavor: r-devel-macos-x86_64-clang

Version: 1.0.2
Flags: --no-vignettes
Check: files in ‘vignettes’
Result: WARN
    Files in the 'vignettes' directory newer than all files in 'inst/doc':
     'pmc_tutorial.Rmd'
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0.2
Flags: --no-vignettes
Check: tests
Result: ERROR
    Running the tests in 'tests/testthat.R' failed.
    Last 13 lines of output:
     R is a collaborative project with many contributors.
     Type 'contributors()' for more information and
     'citation()' on how to cite R or R packages in publications.
    
     Type 'demo()' for some demos, 'help()' for on-line help, or
     'help.start()' for an HTML browser interface to help.
     Type 'q()' to quit R.
    
     > library("testthat")
     > library("pmc")
     >
     > test_check("pmc")
     Loading required package: ape
     At line 35 of file dcopy.f
     Fortran runtime error: Index '2' of dimension 1 of array 'dy' above upper bound of 1
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
     Parameter estimates appear at bounds:
     lambda
    Warning in fitContinuous(phy = att$cache$phy, model = att$model, ..., ncores = 1) :
     Parameter estimates appear at bounds:
     lambda
    Warning in fitContinuous(phy = att$cache$phy, model = att$model, ..., ncores = 1) :
     Parameter estimates appear at bounds:
     lambda
    Warning in fitContinuous(phy = att$cache$phy, model = att$model, ..., ncores = 1) :
     Parameter estimates appear at bounds:
     lambda
    Warning in fitContinuous(phy = att$cache$phy, model = att$model, ..., ncores = 1) :
     Parameter estimates appear at bounds:
     lambda
    Warning in fitContinuous(phy = att$cache$phy, model = att$model, ..., ncores = 1) :
     Parameter estimates appear at bounds:
     lambda
    Warning in treedata(phy, dat) :
     The following tips were not found in 'data' and were dropped from 'phy':
     olivacea
    Warning in treedata(phy, dat) :
     The following tips were not found in 'data' and were dropped from 'phy':
     olivacea
    
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0.2
Check: PDF version of manual
Result: FAIL
    
Flavor: r-release-osx-x86_64-mavericks