CRAN Package Check Results for Package pmclust

Last updated on 2015-04-27 17:48:26.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1-6 2.04 28.24 30.28 NOTE
r-devel-linux-x86_64-debian-gcc 0.1-6 1.89 28.54 30.43 NOTE
r-devel-linux-x86_64-fedora-clang 0.1-6 50.83 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1-6 46.17 NOTE
r-devel-osx-x86_64-clang 0.1-6 54.01 NOTE
r-patched-linux-x86_64 0.1-6 1.69 27.28 28.97 NOTE
r-patched-solaris-sparc 0.1-6 308.70 NOTE
r-patched-solaris-x86 0.1-6 67.00 NOTE
r-release-linux-x86_64 0.1-6 1.91 30.12 32.02 NOTE
r-release-osx-x86_64-mavericks 0.1-6 ERROR
r-release-osx-x86_64-snowleopard 0.1-6 WARN

Check Details

Version: 0.1-6
Check: R code for possible problems
Result: NOTE
    aecm.onestep.spmd: no visible binding for global variable ‘.pmclustEnv’
    apecm.onestep.spmd: no visible binding for global variable
     ‘.pmclustEnv’
    apecma.onestep.spmd: no visible binding for global variable
     ‘.pmclustEnv’
    as.dmat: no visible binding for global variable ‘.SPMD.CT’
    as.gbd: no visible binding for global variable ‘.SPMD.CT’
    as.spmd: no visible binding for global variable ‘.SPMD.CT’
    balance.info: no visible binding for global variable ‘.SPMD.CT’
    check.em.convergence: no visible binding for global variable
     ‘.pmclustEnv’
    check.kmeans.convergence: no visible binding for global variable
     ‘.pmclustEnv’
    cm.step.spmd.ETA: no visible binding for global variable ‘.pmclustEnv’
    cm.step.spmd.ETA.MU.SIGMA.k: no visible binding for global variable
     ‘.pmclustEnv’
    cm.step.spmd.MU: no visible binding for global variable ‘.pmclustEnv’
    cm.step.spmd.MU.SIGMA.k: no visible binding for global variable
     ‘.pmclustEnv’
    cm.step.spmd.SIGMA: no visible binding for global variable
     ‘.pmclustEnv’
    convert.data: no visible binding for global variable ‘.PMC.CT’
    convert.data: no visible binding for global variable ‘.SPMD.CT’
    decompsigma: no visible binding for global variable ‘.pmclustEnv’
    em.onestep: no visible binding for global variable ‘.pmclustEnv’
    em.onestep.dmat: no visible binding for global variable ‘.pmclustEnv’
    em.onestep.spmd: no visible binding for global variable ‘.pmclustEnv’
    get.CLASS: no visible binding for global variable ‘.pmclustEnv’
    get.N.CLASS: no visible binding for global variable ‘.pmclustEnv’
    get.N.CLASS.dmat: no visible binding for global variable ‘.pmclustEnv’
    indep.logL: no visible binding for global variable ‘.pmclustEnv’
    indep.logL.dmat: no visible binding for global variable ‘.pmclustEnv’
    initial.RndEM: no visible binding for global variable ‘.pmclustEnv’
    initial.RndEM.dmat: no visible binding for global variable
     ‘.pmclustEnv’
    initial.RndEM.spmd: no visible binding for global variable
     ‘.pmclustEnv’
    initial.em: no visible binding for global variable ‘.pmclustEnv’
    initial.em.dmat: no visible binding for global variable ‘.pmclustEnv’
    initial.em.spmd: no visible binding for global variable ‘.pmclustEnv’
    kmeans.m.step.dmat: no visible binding for global variable
     ‘.pmclustEnv’
    kmeans.m.step.spmd: no visible binding for global variable
     ‘.pmclustEnv’
    kmeans.onestep.dmat: no visible binding for global variable
     ‘.pmclustEnv’
    kmeans.onestep.spmd: no visible binding for global variable
     ‘.pmclustEnv’
    load.balance: no visible binding for global variable ‘.SPMD.CT’
    logL.step.dmat: no visible binding for global variable ‘.pmclustEnv’
    logL.step.spmd: no visible binding for global variable ‘.pmclustEnv’
    m.step: no visible binding for global variable ‘.pmclustEnv’
    m.step.dmat: no visible binding for global variable ‘.pmclustEnv’
    m.step.spmd: no visible binding for global variable ‘.pmclustEnv’
    mb.print: no visible binding for global variable ‘.PMC.CT’
    mb.print: no visible binding for global variable ‘.pmclustEnv’
    pkmeans: no visible binding for global variable ‘.PMC.CT’
    pkmeans: no visible binding for global variable ‘.SPMD.CT’
    pmclust: no visible binding for global variable ‘.PMC.CT’
    pmclust: no visible binding for global variable ‘.SPMD.CT’
    pmclust.internal: no visible binding for global variable ‘.PMC.CT’
    pmclust.internal: no visible binding for global variable ‘.SPMD.CT’
    pmclust.internal.dmat: no visible binding for global variable ‘.PMC.CT’
    pmclust.internal.dmat: no visible binding for global variable
     ‘.SPMD.CT’
    set.global: no visible binding for global variable ‘.PMC.CT’
    set.global.dmat: no visible binding for global variable ‘.PMC.CT’
    set.global.gbd: no visible binding for global variable ‘.PMC.CT’
    unload.balance: no visible binding for global variable ‘.SPMD.CT’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.1-6
Check: package dependencies
Result: ERROR
    Package required but not available: ‘pbdMPI’
    
    Packages which this enhances but not available for checking:
     ‘pbdSLAP’ ‘pbdBASE’ ‘pbdDMAT’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.1-6
Check: dependencies in R code
Result: NOTE
    [hagal.research.att.com:91604] mca: base: component_find: unable to open mpool sm: file not found (ignored)
    [hagal.research.att.com:91604] mca: base: component_find: unable to open btl sm: file not found (ignored)
    [hagal.research.att.com:91604] mca: base: component_find: unable to open coll sm: file not found (ignored)
    [hagal.research.att.com:91604] mca: base: component_find: unable to open osc pt2pt: file not found (ignored)
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.1-6
Check: S3 generic/method consistency
Result: WARN
    [hagal.research.att.com:92549] mca: base: component_find: unable to open mpool sm: file not found (ignored)
    [hagal.research.att.com:92549] mca: base: component_find: unable to open btl sm: file not found (ignored)
    [hagal.research.att.com:92549] mca: base: component_find: unable to open coll sm: file not found (ignored)
    [hagal.research.att.com:92549] mca: base: component_find: unable to open osc pt2pt: file not found (ignored)
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.1-6
Check: replacement functions
Result: WARN
    [hagal.research.att.com:93668] mca: base: component_find: unable to open mpool sm: file not found (ignored)
    [hagal.research.att.com:93668] mca: base: component_find: unable to open btl sm: file not found (ignored)
    [hagal.research.att.com:93668] mca: base: component_find: unable to open coll sm: file not found (ignored)
    [hagal.research.att.com:93668] mca: base: component_find: unable to open osc pt2pt: file not found (ignored)
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.1-6
Check: foreign function calls
Result: NOTE
    [hagal.research.att.com:93821] mca: base: component_find: unable to open mpool sm: file not found (ignored)
    [hagal.research.att.com:93821] mca: base: component_find: unable to open btl sm: file not found (ignored)
    [hagal.research.att.com:93821] mca: base: component_find: unable to open coll sm: file not found (ignored)
    [hagal.research.att.com:93821] mca: base: component_find: unable to open osc pt2pt: file not found (ignored)
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.1-6
Check: R code for possible problems
Result: NOTE
    [hagal.research.att.com:94911] mca: base: component_find: unable to open mpool sm: file not found (ignored)
    [hagal.research.att.com:94911] mca: base: component_find: unable to open btl sm: file not found (ignored)
    [hagal.research.att.com:94911] mca: base: component_find: unable to open coll sm: file not found (ignored)
    [hagal.research.att.com:94911] mca: base: component_find: unable to open osc pt2pt: file not found (ignored)
    aecm.onestep.spmd: no visible binding for global variable ‘.pmclustEnv’
    apecm.onestep.spmd: no visible binding for global variable
     ‘.pmclustEnv’
    apecma.onestep.spmd: no visible binding for global variable
     ‘.pmclustEnv’
    as.dmat: no visible binding for global variable ‘.SPMD.CT’
    as.gbd: no visible binding for global variable ‘.SPMD.CT’
    as.spmd: no visible binding for global variable ‘.SPMD.CT’
    balance.info: no visible binding for global variable ‘.SPMD.CT’
    check.em.convergence: no visible binding for global variable
     ‘.pmclustEnv’
    check.kmeans.convergence: no visible binding for global variable
     ‘.pmclustEnv’
    cm.step.spmd.ETA: no visible binding for global variable ‘.pmclustEnv’
    cm.step.spmd.ETA.MU.SIGMA.k: no visible binding for global variable
     ‘.pmclustEnv’
    cm.step.spmd.MU: no visible binding for global variable ‘.pmclustEnv’
    cm.step.spmd.MU.SIGMA.k: no visible binding for global variable
     ‘.pmclustEnv’
    cm.step.spmd.SIGMA: no visible binding for global variable
     ‘.pmclustEnv’
    convert.data: no visible binding for global variable ‘.PMC.CT’
    convert.data: no visible binding for global variable ‘.SPMD.CT’
    decompsigma: no visible binding for global variable ‘.pmclustEnv’
    em.onestep: no visible binding for global variable ‘.pmclustEnv’
    em.onestep.dmat: no visible binding for global variable ‘.pmclustEnv’
    em.onestep.spmd: no visible binding for global variable ‘.pmclustEnv’
    get.CLASS: no visible binding for global variable ‘.pmclustEnv’
    get.N.CLASS: no visible binding for global variable ‘.pmclustEnv’
    get.N.CLASS.dmat: no visible binding for global variable ‘.pmclustEnv’
    indep.logL: no visible binding for global variable ‘.pmclustEnv’
    indep.logL.dmat: no visible binding for global variable ‘.pmclustEnv’
    initial.RndEM: no visible binding for global variable ‘.pmclustEnv’
    initial.RndEM.dmat: no visible binding for global variable
     ‘.pmclustEnv’
    initial.RndEM.spmd: no visible binding for global variable
     ‘.pmclustEnv’
    initial.em: no visible binding for global variable ‘.pmclustEnv’
    initial.em.dmat: no visible binding for global variable ‘.pmclustEnv’
    initial.em.spmd: no visible binding for global variable ‘.pmclustEnv’
    kmeans.m.step.dmat: no visible binding for global variable
     ‘.pmclustEnv’
    kmeans.m.step.spmd: no visible binding for global variable
     ‘.pmclustEnv’
    kmeans.onestep.dmat: no visible binding for global variable
     ‘.pmclustEnv’
    kmeans.onestep.spmd: no visible binding for global variable
     ‘.pmclustEnv’
    load.balance: no visible binding for global variable ‘.SPMD.CT’
    logL.step.dmat: no visible binding for global variable ‘.pmclustEnv’
    logL.step.spmd: no visible binding for global variable ‘.pmclustEnv’
    m.step: no visible binding for global variable ‘.pmclustEnv’
    m.step.dmat: no visible binding for global variable ‘.pmclustEnv’
    m.step.spmd: no visible binding for global variable ‘.pmclustEnv’
    mb.print: no visible binding for global variable ‘.PMC.CT’
    mb.print: no visible binding for global variable ‘.pmclustEnv’
    pkmeans: no visible binding for global variable ‘.PMC.CT’
    pkmeans: no visible binding for global variable ‘.SPMD.CT’
    pmclust: no visible binding for global variable ‘.PMC.CT’
    pmclust: no visible binding for global variable ‘.SPMD.CT’
    pmclust.internal: no visible binding for global variable ‘.PMC.CT’
    pmclust.internal: no visible binding for global variable ‘.SPMD.CT’
    pmclust.internal.dmat: no visible binding for global variable ‘.PMC.CT’
    pmclust.internal.dmat: no visible binding for global variable
     ‘.SPMD.CT’
    set.global: no visible binding for global variable ‘.PMC.CT’
    set.global.dmat: no visible binding for global variable ‘.PMC.CT’
    set.global.gbd: no visible binding for global variable ‘.PMC.CT’
    unload.balance: no visible binding for global variable ‘.SPMD.CT’
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.1-6
Check: for missing documentation entries
Result: WARN
    [hagal.research.att.com:97590] mca: base: component_find: unable to open mpool sm: file not found (ignored)
    [hagal.research.att.com:97590] mca: base: component_find: unable to open btl sm: file not found (ignored)
    [hagal.research.att.com:97590] mca: base: component_find: unable to open coll sm: file not found (ignored)
    [hagal.research.att.com:97590] mca: base: component_find: unable to open osc pt2pt: file not found (ignored)
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.1-6
Check: for code/documentation mismatches
Result: WARN
    [hagal.research.att.com:97742] mca: base: component_find: unable to open mpool sm: file not found (ignored)
    [hagal.research.att.com:97742] mca: base: component_find: unable to open btl sm: file not found (ignored)
    [hagal.research.att.com:97742] mca: base: component_find: unable to open coll sm: file not found (ignored)
    [hagal.research.att.com:97742] mca: base: component_find: unable to open osc pt2pt: file not found (ignored)
    [hagal.research.att.com:97916] mca: base: component_find: unable to open mpool sm: file not found (ignored)
    [hagal.research.att.com:97916] mca: base: component_find: unable to open btl sm: file not found (ignored)
    [hagal.research.att.com:97916] mca: base: component_find: unable to open coll sm: file not found (ignored)
    [hagal.research.att.com:97916] mca: base: component_find: unable to open osc pt2pt: file not found (ignored)
    [hagal.research.att.com:97997] mca: base: component_find: unable to open mpool sm: file not found (ignored)
    [hagal.research.att.com:97997] mca: base: component_find: unable to open btl sm: file not found (ignored)
    [hagal.research.att.com:97997] mca: base: component_find: unable to open coll sm: file not found (ignored)
    [hagal.research.att.com:97997] mca: base: component_find: unable to open osc pt2pt: file not found (ignored)
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.1-6
Check: Rd \usage sections
Result: NOTE
    [hagal.research.att.com:98138] mca: base: component_find: unable to open mpool sm: file not found (ignored)
    [hagal.research.att.com:98138] mca: base: component_find: unable to open btl sm: file not found (ignored)
    [hagal.research.att.com:98138] mca: base: component_find: unable to open coll sm: file not found (ignored)
    [hagal.research.att.com:98138] mca: base: component_find: unable to open osc pt2pt: file not found (ignored)
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-snowleopard