CRAN Package Check Results for Package polysat

Last updated on 2014-04-24 07:52:33.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3-2 2.06 54.55 56.62 NOTE
r-devel-linux-x86_64-debian-gcc 1.3-2 1.92 57.15 59.07 NOTE
r-devel-linux-x86_64-fedora-clang 1.3-2 123.96 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3-2 118.38 NOTE
r-devel-osx-x86_64-clang 1.3-2 100.13 NOTE
r-devel-osx-x86_64-gcc 1.3-2 ERROR
r-devel-windows-ix86+x86_64 1.3-2 5.00 80.00 85.00 NOTE
r-patched-linux-x86_64 1.3-2 1.93 54.10 56.03 NOTE
r-patched-solaris-sparc 1.3-2 665.30 NOTE
r-patched-solaris-x86 1.3-2 131.00 NOTE
r-release-linux-ix86 1.3-2 4.00 86.00 90.00 NOTE
r-release-linux-x86_64 1.3-2 2.08 54.86 56.94 NOTE
r-release-osx-x86_64-mavericks 1.3-2 WARN
r-release-osx-x86_64-snowleopard 1.3-2 OK
r-release-windows-ix86+x86_64 1.3-2 5.00 89.00 94.00 NOTE
r-oldrel-windows-ix86+x86_64 1.3-2 5.00 81.00 86.00 NOTE

Check Details

Version: 1.3-2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘combinat’ ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3-2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘adegenet’
Flavor: r-devel-osx-x86_64-gcc

Version: 1.3-2
Check: R code for possible problems
Result: NOTE
    gendata.to.genind: no visible global function definition for ‘genind’
Flavor: r-devel-osx-x86_64-gcc

Version: 1.3-2
Check: examples
Result: ERROR
    Running examples in ‘polysat-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: gendata.to.genind
    > ### Title: Convert Data to genind Format
    > ### Aliases: gendata.to.genind
    > ### Keywords: manip
    >
    > ### ** Examples
    >
    > # create a "genambig" object
    > mydata <- new("genambig", samples=c("a","b","c","d"), loci=c("e","f"))
    > PopNames(mydata) <- c("G","H")
    > PopInfo(mydata) <- c(1,1,2,2)
    > mydata <- reformatPloidies(mydata, output="one")
    > Ploidies(mydata) <- 3
    > Genotypes(mydata, loci="e") <- list(c(100),c(100,102),
    + c(98,102,104),c(102,106))
    > Genotypes(mydata, loci="f") <- list(c(200,202,204),Missing(mydata),
    + c(210,212),c(204,210,214))
    >
    > # convert to "genind"
    > mydata2 <- gendata.to.genind(mydata)
    Loading required package: adegenet
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘adegenet’
    Error in gendata.to.genind(mydata) : could not find function "genind"
    Execution halted
Flavor: r-devel-osx-x86_64-gcc

Version: 1.3-2
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    77a4c9c/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks