Last updated on 2014-04-24 07:52:33.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3-2 | 2.06 | 54.55 | 56.62 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.3-2 | 1.92 | 57.15 | 59.07 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.3-2 | 123.96 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3-2 | 118.38 | NOTE | |||
| r-devel-osx-x86_64-clang | 1.3-2 | 100.13 | NOTE | |||
| r-devel-osx-x86_64-gcc | 1.3-2 | ERROR | ||||
| r-devel-windows-ix86+x86_64 | 1.3-2 | 5.00 | 80.00 | 85.00 | NOTE | |
| r-patched-linux-x86_64 | 1.3-2 | 1.93 | 54.10 | 56.03 | NOTE | |
| r-patched-solaris-sparc | 1.3-2 | 665.30 | NOTE | |||
| r-patched-solaris-x86 | 1.3-2 | 131.00 | NOTE | |||
| r-release-linux-ix86 | 1.3-2 | 4.00 | 86.00 | 90.00 | NOTE | |
| r-release-linux-x86_64 | 1.3-2 | 2.08 | 54.86 | 56.94 | NOTE | |
| r-release-osx-x86_64-mavericks | 1.3-2 | WARN | ||||
| r-release-osx-x86_64-snowleopard | 1.3-2 | OK | ||||
| r-release-windows-ix86+x86_64 | 1.3-2 | 5.00 | 89.00 | 94.00 | NOTE | |
| r-oldrel-windows-ix86+x86_64 | 1.3-2 | 5.00 | 81.00 | 86.00 | NOTE |
Version: 1.3-2
Check: dependencies in R code
Result: NOTE
Packages in Depends field not imported from:
‘combinat’ ‘methods’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.3-2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘adegenet’
Flavor: r-devel-osx-x86_64-gcc
Version: 1.3-2
Check: R code for possible problems
Result: NOTE
gendata.to.genind: no visible global function definition for ‘genind’
Flavor: r-devel-osx-x86_64-gcc
Version: 1.3-2
Check: examples
Result: ERROR
Running examples in ‘polysat-Ex.R’ failed
The error most likely occurred in:
> ### Name: gendata.to.genind
> ### Title: Convert Data to genind Format
> ### Aliases: gendata.to.genind
> ### Keywords: manip
>
> ### ** Examples
>
> # create a "genambig" object
> mydata <- new("genambig", samples=c("a","b","c","d"), loci=c("e","f"))
> PopNames(mydata) <- c("G","H")
> PopInfo(mydata) <- c(1,1,2,2)
> mydata <- reformatPloidies(mydata, output="one")
> Ploidies(mydata) <- 3
> Genotypes(mydata, loci="e") <- list(c(100),c(100,102),
+ c(98,102,104),c(102,106))
> Genotypes(mydata, loci="f") <- list(c(200,202,204),Missing(mydata),
+ c(210,212),c(204,210,214))
>
> # convert to "genind"
> mydata2 <- gendata.to.genind(mydata)
Loading required package: adegenet
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘adegenet’
Error in gendata.to.genind(mydata) : could not find function "genind"
Execution halted
Flavor: r-devel-osx-x86_64-gcc
Version: 1.3-2
Check: PDF version of manual
Result: WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! LaTeX Error: File `upquote.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
77a4c9c/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks