CRAN Package Check Results for Package pomp

Last updated on 2017-09-19 19:46:37.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.14 8.82 39.52 48.34 ERROR
r-devel-linux-x86_64-debian-gcc 1.14 9.08 38.49 47.57 ERROR
r-devel-linux-x86_64-fedora-clang 1.14 82.54 ERROR
r-devel-linux-x86_64-fedora-gcc 1.14 81.95 ERROR
r-devel-windows-ix86+x86_64 1.14 50.00 106.00 156.00 ERROR
r-patched-linux-x86_64 1.14 8.80 49.45 58.26 OK
r-patched-solaris-x86 1.14 147.80 OK
r-release-linux-x86_64 1.14 9.03 49.99 59.02 OK
r-release-windows-ix86+x86_64 1.14 47.00 120.00 167.00 OK
r-release-osx-x86_64 1.14 OK
r-oldrel-windows-ix86+x86_64 1.14 46.00 106.00 152.00 OK
r-oldrel-osx-x86_64 1.14 OK

Check Details

Version: 1.14
Check: examples
Result: ERROR
    Running examples in ‘pomp-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: dacca
    > ### Title: Model of cholera transmission for historic Bengal.
    > ### Aliases: dacca
    > ### Keywords: models datasets
    >
    > ### ** Examples
    >
    > pompExample(dacca)
    newly created object(s):
     dacca
    > plot(dacca)
    > #MLEs on the natural scale
    > coef(dacca)
     gamma eps rho delta deltaI clin
    20.800000000 19.100000000 0.000000000 0.020000000 0.060000000 1.000000000
     alpha beta_trend logbeta1 logbeta2 logbeta3 logbeta4
     1.000000000 -0.004980000 0.747000000 6.380000000 -3.440000000 4.230000000
     logbeta5 logbeta6 logomega1 logomega2 logomega3 logomega4
     3.330000000 4.550000000 -1.692819521 -2.543383580 -2.840439389 -4.691817993
     logomega5 logomega6 sd_beta tau S_0 I_0
    -8.477972478 -4.390058806 3.130000000 0.230000000 0.621000000 0.378000000
     Y_0 R1_0 R2_0 R3_0
     0.000000000 0.000843000 0.000972000 0.000000116
    > #MLEs on the transformed scale
    > coef(dacca,transform=TRUE)
    Error in pompLoad.internal(object, ...) :
     STRING_PTR() can only be applied to a 'character', not a 'char'
    Calls: coef ... partrans.internal -> pompLoad -> pompLoad -> pompLoad.internal
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.14
Check: examples
Result: ERROR
    Running examples in ‘pomp-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: dacca
    > ### Title: Model of cholera transmission for historic Bengal.
    > ### Aliases: dacca
    > ### Keywords: models datasets
    >
    > ### ** Examples
    >
    > pompExample(dacca)
    newly created object(s):
     dacca
    > plot(dacca)
    > #MLEs on the natural scale
    > coef(dacca)
     gamma eps rho delta deltaI clin
    20.800000000 19.100000000 0.000000000 0.020000000 0.060000000 1.000000000
     alpha beta_trend logbeta1 logbeta2 logbeta3 logbeta4
     1.000000000 -0.004980000 0.747000000 6.380000000 -3.440000000 4.230000000
     logbeta5 logbeta6 logomega1 logomega2 logomega3 logomega4
     3.330000000 4.550000000 -1.692819521 -2.543383580 -2.840439389 -4.691817993
     logomega5 logomega6 sd_beta tau S_0 I_0
    -8.477972478 -4.390058806 3.130000000 0.230000000 0.621000000 0.378000000
     Y_0 R1_0 R2_0 R3_0
     0.000000000 0.000843000 0.000972000 0.000000116
    > #MLEs on the transformed scale
    > coef(dacca,transform=TRUE)
    Error in pompLoad.internal(object, ...) :
     STRING_PTR() can only be applied to a 'character', not a 'char'
    Calls: coef ... partrans.internal -> pompLoad -> pompLoad -> pompLoad.internal
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.14
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'pomp-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: dacca
    > ### Title: Model of cholera transmission for historic Bengal.
    > ### Aliases: dacca
    > ### Keywords: models datasets
    >
    > ### ** Examples
    >
    > pompExample(dacca)
    make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/3.5/pomp.Rcheck/examples_i386'
    d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O3 -Wall -std=gnu99 -mtune=core2 -c D:/temp/RtmpIRmiXc/248140/pomp_35dce17261249c964e448979db10928f.c -o D:/temp/RtmpIRmiXc/248140/pomp_35dce17261249c964e448979db10928f.o
    d:/Compiler/gcc-4.9.3/mingw_32/bin/gcc -shared -s -static-libgcc -o D:/temp/RtmpIRmiXc/248140/pomp_35dce17261249c964e448979db10928f.dll tmp.def D:/temp/RtmpIRmiXc/248140/pomp_35dce17261249c964e448979db10928f.o -Ld:/Compiler/gcc-4.9.3/local330/lib/i386 -Ld:/Compiler/gcc-4.9.3/local330/lib -LD:/RCompile/recent/R/bin/i386 -lR
    make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/3.5/pomp.Rcheck/examples_i386'
    make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/3.5/pomp.Rcheck/examples_i386'
    make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/3.5/pomp.Rcheck/examples_i386'
    make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/3.5/pomp.Rcheck/examples_i386'
    make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/3.5/pomp.Rcheck/examples_i386'
    newly created object(s):
     dacca
    > plot(dacca)
    > #MLEs on the natural scale
    > coef(dacca)
     gamma eps rho delta deltaI clin
    20.800000000 19.100000000 0.000000000 0.020000000 0.060000000 1.000000000
     alpha beta_trend logbeta1 logbeta2 logbeta3 logbeta4
     1.000000000 -0.004980000 0.747000000 6.380000000 -3.440000000 4.230000000
     logbeta5 logbeta6 logomega1 logomega2 logomega3 logomega4
     3.330000000 4.550000000 -1.692819521 -2.543383580 -2.840439389 -4.691817993
     logomega5 logomega6 sd_beta tau S_0 I_0
    -8.477972478 -4.390058806 3.130000000 0.230000000 0.621000000 0.378000000
     Y_0 R1_0 R2_0 R3_0
     0.000000000 0.000843000 0.000972000 0.000000116
    > #MLEs on the transformed scale
    > coef(dacca,transform=TRUE)
    Error in pompLoad.internal(object, ...) :
     STRING_PTR() can only be applied to a 'character', not a 'char'
    Calls: coef ... partrans.internal -> pompLoad -> pompLoad -> pompLoad.internal
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.14
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'pomp-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: dacca
    > ### Title: Model of cholera transmission for historic Bengal.
    > ### Aliases: dacca
    > ### Keywords: models datasets
    >
    > ### ** Examples
    >
    > pompExample(dacca)
    make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/3.5/pomp.Rcheck/examples_x64'
    d:/Compiler/gcc-4.9.3/mingw_64/bin/gcc -m64 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/Compiler/gcc-4.9.3/local330/include" -pedantic -O2 -Wall -std=gnu99 -mtune=core2 -c D:/temp/RtmpiUxHTT/236592/pomp_876ed8fa0f6bf673bdfb7b51a30f3239.c -o D:/temp/RtmpiUxHTT/236592/pomp_876ed8fa0f6bf673bdfb7b51a30f3239.o
    d:/Compiler/gcc-4.9.3/mingw_64/bin/gcc -m64 -shared -s -static-libgcc -o D:/temp/RtmpiUxHTT/236592/pomp_876ed8fa0f6bf673bdfb7b51a30f3239.dll tmp.def D:/temp/RtmpiUxHTT/236592/pomp_876ed8fa0f6bf673bdfb7b51a30f3239.o -Ld:/Compiler/gcc-4.9.3/local330/lib/x64 -Ld:/Compiler/gcc-4.9.3/local330/lib -LD:/RCompile/recent/R/bin/x64 -lR
    make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/3.5/pomp.Rcheck/examples_x64'
    make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/3.5/pomp.Rcheck/examples_x64'
    make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/3.5/pomp.Rcheck/examples_x64'
    make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/3.5/pomp.Rcheck/examples_x64'
    make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/3.5/pomp.Rcheck/examples_x64'
    newly created object(s):
     dacca
    > plot(dacca)
    > #MLEs on the natural scale
    > coef(dacca)
     gamma eps rho delta deltaI clin
    20.800000000 19.100000000 0.000000000 0.020000000 0.060000000 1.000000000
     alpha beta_trend logbeta1 logbeta2 logbeta3 logbeta4
     1.000000000 -0.004980000 0.747000000 6.380000000 -3.440000000 4.230000000
     logbeta5 logbeta6 logomega1 logomega2 logomega3 logomega4
     3.330000000 4.550000000 -1.692819521 -2.543383580 -2.840439389 -4.691817993
     logomega5 logomega6 sd_beta tau S_0 I_0
    -8.477972478 -4.390058806 3.130000000 0.230000000 0.621000000 0.378000000
     Y_0 R1_0 R2_0 R3_0
     0.000000000 0.000843000 0.000972000 0.000000116
    > #MLEs on the transformed scale
    > coef(dacca,transform=TRUE)
    Error in pompLoad.internal(object, ...) :
     STRING_PTR() can only be applied to a 'character', not a 'char'
    Calls: coef ... partrans.internal -> pompLoad -> pompLoad -> pompLoad.internal
    Execution halted
Flavor: r-devel-windows-ix86+x86_64