CRAN Package Check Results for Package pomp

Last updated on 2015-07-30 15:48:23.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.65-1 7.12 42.00 49.12 NOTE
r-devel-linux-x86_64-debian-gcc 0.65-1 8.75 39.41 48.16 NOTE
r-devel-linux-x86_64-fedora-clang 0.65-1 91.65 NOTE
r-devel-linux-x86_64-fedora-gcc 0.65-1 87.88 NOTE
r-devel-osx-x86_64-clang 0.65-1 81.26 OK
r-devel-windows-ix86+x86_64 0.65-1 80.00 123.00 203.00 NOTE
r-patched-linux-x86_64 0.65-1 8.77 39.65 48.42 OK
r-patched-solaris-sparc 0.65-1 662.60 OK --no-tests --no-vignettes
r-patched-solaris-x86 0.65-1 133.80 OK
r-release-linux-x86_64 0.65-1 8.81 42.34 51.14 OK
r-release-osx-x86_64-mavericks 0.65-1 OK
r-release-windows-ix86+x86_64 0.65-1 60.00 100.00 160.00 OK
r-oldrel-windows-ix86+x86_64 0.65-1 70.00 103.00 173.00 OK

Check Details

Version: 0.65-1
Check: R code for possible problems
Result: NOTE
    NLF.guts: no visible global function definition for ‘lm’
    NLF.guts: no visible global function definition for ‘residuals’
    NLF.guts: no visible global function definition for ‘par’
    NLF.guts: no visible global function definition for ‘fitted’
    NLF.guts: no visible global function definition for ‘abline’
    NLF.guts: no visible global function definition for ‘sd’
    NLF.guts: no visible global function definition for ‘dnorm’
    NLF.guts: no visible global function definition for ‘cov’
    abc.diagnostics: no visible global function definition for ‘pairs’
    abc.diagnostics: no visible global function definition for ‘par’
    abc.diagnostics: no visible global function definition for ‘matplot’
    abc.diagnostics: no visible global function definition for ‘box’
    abc.diagnostics: no visible global function definition for ‘axis’
    abc.diagnostics: no visible global function definition for ‘mtext’
    abc.internal: no visible global function definition for ‘runif’
    bsmc.internal: no visible global function definition for ‘runif’
    bsmc.internal: no visible global function definition for ‘cov’
    bsmc.internal: no visible binding for global variable ‘median’
    bsmc.plot: no visible global function definition for ‘pairs’
    bsmc.plot : <anonymous>: no visible global function definition for
     ‘par’
    bsmc.plot : <anonymous>: no visible global function definition for
     ‘points’
    bsmc.plot : <anonymous>: no visible global function definition for
     ‘rgb’
    bsmc.plot : <anonymous>: no visible global function definition for
     ‘density’
    bsmc.plot : <anonymous>: no visible global function definition for
     ‘polygon’
    bsmc2.internal: no visible global function definition for ‘runif’
    bsmc2.internal: no visible global function definition for ‘cov’
    bsmc2.internal: no visible binding for global variable ‘median’
    compute.spect.data: no visible global function definition for
     ‘spec.pgram’
    compute.spect.sim: no visible global function definition for
     ‘spec.pgram’
    default.initializer: no visible global function definition for
     ‘setNames’
    default.pomp.particles.fun: no visible global function definition for
     ‘rnorm’
    logmeanexp: no visible global function definition for ‘sd’
    mif.diagnostics: no visible global function definition for ‘par’
    mif.diagnostics: no visible global function definition for
     ‘dev.interactive’
    mif.diagnostics: no visible global function definition for ‘matplot’
    mif.diagnostics: no visible global function definition for ‘box’
    mif.diagnostics: no visible global function definition for ‘axis’
    mif.diagnostics: no visible global function definition for ‘mtext’
    minim.internal: no visible global function definition for ‘optim’
    mvn.diag.rw : <anonymous>: no visible global function definition for
     ‘rnorm’
    mvn.rw : <anonymous>: no visible global function definition for ‘rnorm’
    nlf.internal: no visible global function definition for ‘optim’
    nlf.internal: no visible global function definition for ‘lm’
    nlf.internal: no visible global function definition for ‘setNames’
    pfilter.internal: no visible global function definition for ‘runif’
    pfilter.internal: no visible global function definition for ‘setNames’
    plotpomp.internal: no visible binding for global variable ‘lines’
    plotpomp.internal : plotpomp: no visible binding for global variable
     ‘lines’
    plotpomp.internal : plotpomp: no visible global function definition for
     ‘par’
    plotpomp.internal : plotpomp : addmain: no visible global function
     definition for ‘par’
    plotpomp.internal : plotpomp : addmain: no visible global function
     definition for ‘mtext’
    plotpomp.internal : plotpomp: no visible global function definition for
     ‘plot.default’
    plotpomp.internal : plotpomp: no visible global function definition for
     ‘box’
    plotpomp.internal : plotpomp: no visible global function definition for
     ‘axis’
    plotpomp.internal : plotpomp: no visible global function definition for
     ‘mtext’
    plotpomp.internal: no visible global function definition for ‘par’
    plotpomp.internal: no visible global function definition for
     ‘dev.interactive’
    pmcmc.diagnostics: no visible global function definition for ‘par’
    pmcmc.diagnostics: no visible global function definition for ‘matplot’
    pmcmc.diagnostics: no visible global function definition for ‘box’
    pmcmc.diagnostics: no visible global function definition for ‘axis’
    pmcmc.diagnostics: no visible global function definition for ‘mtext’
    pmcmc.internal: no visible global function definition for ‘runif’
    pomp.constructor: no visible global function definition for ‘setNames’
    pomp.detrend: no visible global function definition for ‘lm’
    pompExample: no visible global function definition for ‘setNames’
    predvarplot.mif: no visible global function definition for ‘matplot’
    predvarplot.mif: no visible global function definition for ‘legend’
    probe.cor : <anonymous>: no visible global function definition for
     ‘cor’
    probe.cov : <anonymous>: no visible global function definition for
     ‘cov’
    probe.median : <anonymous>: no visible global function definition for
     ‘median’
    probe.period : <anonymous>: no visible global function definition for
     ‘spec.pgram’
    probe.period : <anonymous>: no visible global function definition for
     ‘kernel’
    probe.quantile : <anonymous>: no visible global function definition for
     ‘quantile’
    probe.sd : <anonymous>: no visible global function definition for ‘sd’
    probeplot.internal : diag.panel.hist: no visible global function
     definition for ‘par’
    probeplot.internal : diag.panel.hist: no visible global function
     definition for ‘hist’
    probeplot.internal : diag.panel.hist: no visible global function
     definition for ‘rect’
    probeplot.internal : diag.panel.hist: no visible global function
     definition for ‘lines’
    probeplot.internal : above.diag.panel: no visible global function
     definition for ‘points’
    probeplot.internal : above.diag.panel: no visible global function
     definition for ‘lines’
    probeplot.internal : below.diag.panel: no visible global function
     definition for ‘cor’
    probeplot.internal : below.diag.panel: no visible global function
     definition for ‘text’
    probeplot.internal: no visible global function definition for ‘pairs’
    randomName: no visible global function definition for ‘runif’
    reuman.kernel: no visible global function definition for ‘kernel’
    sannbox : candidate.dist: no visible global function definition for
     ‘rnorm’
    sannbox: no visible global function definition for ‘runif’
    simulate.internal: no visible global function definition for ‘runif’
    spect.match: no visible global function definition for ‘optim’
    trajectory.internal: no visible global function definition for
     ‘setNames’
    plot,pomp: no visible binding for global variable ‘lines’
    plot,spect.pomp: no visible global function definition for ‘par’
    plot,spect.pomp: no visible global function definition for ‘quantile’
    plot,spect.pomp: no visible global function definition for ‘title’
    plot,spect.pomp: no visible global function definition for ‘lines’
    Undefined global functions or variables:
     abline axis box cor cov density dev.interactive dnorm fitted hist
     kernel legend lines lm matplot median mtext optim pairs par
     plot.default points polygon quantile rect residuals rgb rnorm runif
     sd setNames spec.pgram text title
    Consider adding
     importFrom("grDevices", "dev.interactive", "rgb")
     importFrom("graphics", "abline", "axis", "box", "hist", "legend",
     "lines", "matplot", "mtext", "pairs", "par", "plot.default",
     "points", "polygon", "rect", "text", "title")
     importFrom("stats", "cor", "cov", "density", "dnorm", "fitted",
     "kernel", "lm", "median", "optim", "quantile", "residuals",
     "rnorm", "runif", "sd", "setNames", "spec.pgram")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64