CRAN Package Check Results for Package popbio

Last updated on 2015-08-01 11:49:08.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.4 1.09 30.12 31.21 NOTE
r-devel-linux-x86_64-debian-gcc 2.4 1.17 29.84 31.01 NOTE
r-devel-linux-x86_64-fedora-clang 2.4 62.38 NOTE
r-devel-linux-x86_64-fedora-gcc 2.4 58.92 NOTE
r-devel-osx-x86_64-clang 2.4 52.51 NOTE
r-devel-windows-ix86+x86_64 2.4 6.00 70.00 76.00 NOTE
r-patched-linux-x86_64 2.4 1.60 30.83 32.43 NOTE
r-patched-solaris-sparc 2.4 398.40 NOTE
r-patched-solaris-x86 2.4 82.00 NOTE
r-release-linux-x86_64 2.4 1.08 30.99 32.08 NOTE
r-release-osx-x86_64-mavericks 2.4 NOTE
r-release-windows-ix86+x86_64 2.4 6.00 56.00 62.00 NOTE
r-oldrel-windows-ix86+x86_64 2.4 8.00 55.00 63.00 NOTE

Check Details

Version: 2.4
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘quadprog’ which was already attached by Depends.
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     mean.list
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.4
Check: R code for possible problems
Result: NOTE
    Kendall: no visible global function definition for ‘var’
    betaval: no visible global function definition for ‘runif’
    betaval: no visible global function definition for ‘pbeta’
    colorguide: no visible global function definition for ‘par’
    colorguide: no visible global function definition for ‘plot’
    colorguide: no visible global function definition for ‘rect’
    colorguide: no visible global function definition for ‘text’
    countCDFxt: no visible global function definition for ‘qt’
    countCDFxt: no visible global function definition for ‘qchisq’
    countCDFxt: no visible global function definition for ‘rnorm’
    countCDFxt: no visible global function definition for ‘rchisq’
    countCDFxt: no visible global function definition for ‘lines’
    extCDF : erf: no visible global function definition for ‘pnorm’
    image2: no visible global function definition for ‘heat.colors’
    image2: no visible global function definition for ‘par’
    image2: no visible global function definition for ‘plot’
    image2: no visible global function definition for ‘rect’
    image2: no visible global function definition for ‘text’
    lnorms: no visible global function definition for ‘rnorm’
    logi.hist.plot : logi.scater: no visible global function definition for
     ‘plot’
    logi.hist.plot : logi.rug: no visible global function definition for
     ‘points’
    logi.hist.plot : logi.box: no visible global function definition for
     ‘plot’
    logi.hist.plot : logi.box: no visible global function definition for
     ‘boxplot’
    logi.hist.plot : logi.curve: no visible global function definition for
     ‘glm’
    logi.hist.plot : logi.curve: no visible binding for global variable
     ‘binomial’
    logi.hist.plot : logi.curve: no visible global function definition for
     ‘predict’
    logi.hist.plot : logi.curve: no visible global function definition for
     ‘lines’
    logi.hist.plot : logi.dit: no visible global function definition for
     ‘points’
    logi.hist.plot : logi.hist: no visible global function definition for
     ‘hist’
    logi.hist.plot : logi.hist: no visible global function definition for
     ‘polygon’
    logi.hist.plot : logi.hist: no visible global function definition for
     ‘text’
    logi.hist.plot : logi.hist : axis.hist: no visible global function
     definition for ‘axis’
    logi.hist.plot : logi.hist : axis.hist: no visible global function
     definition for ‘mtext’
    logi.hist.plot : logi.hist: no visible global function definition for
     ‘axis’
    logi.hist.plot: no visible global function definition for ‘par’
    matplot2: no visible global function definition for ‘rainbow’
    matplot2: no visible global function definition for ‘matplot’
    matplot2: no visible global function definition for ‘axis’
    multiresultm: no visible global function definition for ‘runif’
    multiresultm: no visible global function definition for ‘rbinom’
    pfister.plot: no visible binding for global variable ‘var’
    pfister.plot: no visible global function definition for ‘par’
    pfister.plot: no visible global function definition for ‘plot’
    resample : <anonymous>: no visible global function definition for
     ‘rmultinom’
    stage.vector.plot: no visible global function definition for ‘rainbow’
    stage.vector.plot: no visible global function definition for ‘plot’
    stage.vector.plot: no visible global function definition for ‘lines’
    stage.vector.plot: no visible global function definition for ‘legend’
    stoch.growth.rate: no visible global function definition for ‘var’
    var2: no visible binding for global variable ‘var’
    varEst: no visible global function definition for ‘var’
    vitalsens: no visible binding for global variable ‘deriv’
    vitalsim: no visible global function definition for ‘rnorm’
    vitalsim: no visible global function definition for ‘pnorm’
    vitalsim: no visible binding for global variable ‘sd’
    vitalsim: no visible global function definition for ‘par’
    vitalsim: no visible global function definition for ‘hist’
    vitalsim: no visible global function definition for ‘abline’
    vitalsim: no visible global function definition for ‘plot’
    Undefined global functions or variables:
     abline axis binomial boxplot deriv glm heat.colors hist legend lines
     matplot mtext par pbeta plot pnorm points polygon predict qchisq qt
     rainbow rbinom rchisq rect rmultinom rnorm runif sd text var
    Consider adding
     importFrom("grDevices", "heat.colors", "rainbow")
     importFrom("graphics", "abline", "axis", "boxplot", "hist", "legend",
     "lines", "matplot", "mtext", "par", "plot", "points",
     "polygon", "rect", "text")
     importFrom("stats", "binomial", "deriv", "glm", "pbeta", "pnorm",
     "predict", "qchisq", "qt", "rbinom", "rchisq", "rmultinom",
     "rnorm", "runif", "sd", "var")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.4
Check: Rd line widths
Result: NOTE
    Rd file 'LTRE.Rd':
     \examples lines wider than 100 characters:
     barplot(ie, xlab="Plot (years 82-83 to 85-86)", ylab="Interaction effect" , ylim=c(-.25, .25), col="blue", las=1)
    
    Rd file 'colorguide.Rd':
     \examples lines wider than 100 characters:
     jet.colors = colorRampPalette(c("#00007F", "blue", "#007FFF", "cyan", "#7FFF7F", "yellow", "#FF7F00", "red", "#7F0000"))
    
    Rd file 'pfister.plot.Rd':
     \examples lines wider than 100 characters:
     y2<-expression(S[11], G[21],G[31],G[41],F[12],S[22],G[32],G[42],F[13],R[23],S[33],G[43],F[14],R[34],S[44])
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64