CRAN Package Check Results for Package popgen

Last updated on 2015-07-04 19:47:50.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-3 1.41 24.43 25.84 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-3 1.68 24.36 26.04 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-3 50.69 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-3 47.80 NOTE
r-devel-osx-x86_64-clang 1.0-3 45.34 NOTE
r-devel-windows-ix86+x86_64 1.0-3 14.00 70.00 84.00 NOTE
r-patched-linux-x86_64 1.0-3 1.75 24.44 26.20 NOTE
r-patched-solaris-sparc 1.0-3 395.70 NOTE
r-patched-solaris-x86 1.0-3 69.70 NOTE
r-release-linux-x86_64 1.0-3 1.70 24.45 26.15 NOTE
r-release-osx-x86_64-mavericks 1.0-3 NOTE
r-release-windows-ix86+x86_64 1.0-3 14.00 68.00 82.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0-3 17.00 100.00 117.00 NOTE

Memtest notes: valgrind

Check Details

Version: 1.0-3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘cluster’ which was already attached by Depends.
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-3
Check: R code for possible problems
Result: NOTE
    LDmat: no visible global function definition for ‘grey’
    LDmat: no visible global function definition for ‘par’
    LDmat: no visible global function definition for ‘plot’
    LDmat: no visible global function definition for ‘image’
    LDmat: no visible global function definition for ‘axis’
    LDmat: no visible global function definition for ‘text’
    LDmat: no visible global function definition for ‘lines’
    nps: no visible global function definition for ‘dist’
    nps: no visible global function definition for ‘hclust’
    nps : f.W: no visible global function definition for ‘cutree’
    nps: no visible binding for global variable ‘var’
    nps.plot: no visible global function definition for ‘plot’
    nps.plot: no visible global function definition for ‘arrows’
    nps.plot: no visible global function definition for ‘lines’
    ps : pi.init.set: no visible global function definition for ‘runif’
    ps: no visible global function definition for ‘var’
    simMD : rdirichlet: no visible global function definition for ‘rgamma’
    simMD : rmultinom: no visible global function definition for ‘runif’
    Undefined global functions or variables:
     arrows axis cutree dist grey hclust image lines par plot rgamma runif
     text var
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.0-3
Check: Rd line widths
Result: NOTE
    Rd file 'popdiv.Rd':
     \examples lines wider than 100 characters:
     res1 <- popdiv(L = nrow(X1$N), P = ncol(X1$N), NUMA = X1$NUMA, N = X1$N, X = X1$X, burnin = 100, iter = 100, m = 10, csd = 0.01, outc ... [TRUNCATED]
    
    Rd file 'ps.Rd':
     \usage lines wider than 90 characters:
     ps(X, K, burn.in = 10^4, num.sample = 10^4, thin = 1, alpha.start = 1.0, alpha.sd = 0.05, alpha.step = 10, alpha.max = 20, z.init = NUL ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64