CRAN Package Check Results for Package popgen

Last updated on 2015-09-03 18:47:16.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-3 1.35 24.32 25.68 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-3 1.68 25.12 26.80 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-3 50.41 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-3 48.09 NOTE
r-devel-osx-x86_64-clang 1.0-3 44.48 NOTE
r-devel-windows-ix86+x86_64 1.0-3 14.00 95.00 109.00 NOTE
r-patched-linux-x86_64 1.0-3 1.80 24.46 26.27 NOTE
r-patched-solaris-sparc 1.0-3 397.90 NOTE
r-patched-solaris-x86 1.0-3 65.90 NOTE
r-release-linux-x86_64 1.0-3 1.74 24.41 26.15 NOTE
r-release-osx-x86_64-mavericks 1.0-3 NOTE
r-release-windows-ix86+x86_64 1.0-3 14.00 68.00 82.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0-3 15.00 80.00 95.00 NOTE

Memtest notes: valgrind

Check Details

Version: 1.0-3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘cluster’ which was already attached by Depends.
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-3
Check: R code for possible problems
Result: NOTE
    LDmat: no visible global function definition for ‘grey’
    LDmat: no visible global function definition for ‘par’
    LDmat: no visible global function definition for ‘plot’
    LDmat: no visible global function definition for ‘image’
    LDmat: no visible global function definition for ‘axis’
    LDmat: no visible global function definition for ‘text’
    LDmat: no visible global function definition for ‘lines’
    nps: no visible global function definition for ‘dist’
    nps: no visible global function definition for ‘hclust’
    nps : f.W: no visible global function definition for ‘cutree’
    nps: no visible binding for global variable ‘var’
    nps.plot: no visible global function definition for ‘plot’
    nps.plot: no visible global function definition for ‘arrows’
    nps.plot: no visible global function definition for ‘lines’
    ps : pi.init.set: no visible global function definition for ‘runif’
    ps: no visible global function definition for ‘var’
    simMD : rdirichlet: no visible global function definition for ‘rgamma’
    simMD : rmultinom: no visible global function definition for ‘runif’
    Undefined global functions or variables:
     arrows axis cutree dist grey hclust image lines par plot rgamma runif
     text var
    Consider adding
     importFrom("grDevices", "grey")
     importFrom("graphics", "arrows", "axis", "image", "lines", "par",
     "plot", "text")
     importFrom("stats", "cutree", "dist", "hclust", "rgamma", "runif",
     "var")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.0-3
Check: Rd line widths
Result: NOTE
    Rd file 'popdiv.Rd':
     \examples lines wider than 100 characters:
     res1 <- popdiv(L = nrow(X1$N), P = ncol(X1$N), NUMA = X1$NUMA, N = X1$N, X = X1$X, burnin = 100, iter = 100, m = 10, csd = 0.01, outc ... [TRUNCATED]
    
    Rd file 'ps.Rd':
     \usage lines wider than 90 characters:
     ps(X, K, burn.in = 10^4, num.sample = 10^4, thin = 1, alpha.start = 1.0, alpha.sd = 0.05, alpha.step = 10, alpha.max = 20, z.init = NUL ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64