CRAN Package Check Results for Package ppiPre

Last updated on 2015-06-30 18:47:27.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7 4.79 54.91 59.70 ERROR
r-devel-linux-x86_64-debian-gcc 1.7 4.71 54.03 58.74 ERROR
r-devel-linux-x86_64-fedora-clang 1.7 127.10 ERROR
r-devel-linux-x86_64-fedora-gcc 1.7 117.06 ERROR
r-devel-osx-x86_64-clang 1.7 110.35 ERROR
r-devel-windows-ix86+x86_64 1.7 19.00 80.00 99.00 NOTE
r-patched-linux-x86_64 1.7 4.51 53.64 58.15 ERROR
r-patched-solaris-sparc 1.7 791.90 ERROR
r-patched-solaris-x86 1.7 148.50 ERROR
r-release-linux-x86_64 1.7 4.62 54.14 58.76 ERROR
r-release-osx-x86_64-mavericks 1.7 NOTE
r-release-windows-ix86+x86_64 1.7 19.00 81.00 100.00 ERROR
r-oldrel-windows-ix86+x86_64 1.7 21.00 126.00 147.00 ERROR

Check Details

Version: 1.7
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     ‘org.Ag.eg.db’ ‘org.Pt.eg.db’ ‘org.Rn.eg.db’ ‘org.Ss.eg.db’
     ‘org.Bt.eg.db’ ‘org.Ce.eg.db’ ‘org.Cf.eg.db’ ‘org.Dm.eg.db’
     ‘org.Dr.eg.db’ ‘org.EcK12.eg.db’ ‘org.EcSakai.eg.db’ ‘org.Gg.eg.db’
     ‘org.Mmu.eg.db’ ‘org.Pf.plasmo.db’ ‘org.Xl.eg.db’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.7
Check: R code for possible problems
Result: NOTE
    AASim: no visible global function definition for ‘na.omit’
    ComputeAllEvidences: no visible global function definition for
     ‘read.csv’
    ComputeAllEvidences: no visible global function definition for
     ‘na.omit’
    ComputeAllEvidences: no visible global function definition for
     ‘write.csv’
    FNPre: no visible global function definition for ‘read.csv’
    FNPre: no visible global function definition for ‘write.csv’
    GOKEGGSimsFromFile: no visible global function definition for
     ‘read.csv’
    GOKEGGSimsFromFile: no visible global function definition for
     ‘write.csv’
    JaccardSim: no visible global function definition for ‘na.omit’
    KEGGSim: no visible global function definition for ‘na.omit’
    RASim: no visible global function definition for ‘na.omit’
    SVMPredict: no visible global function definition for ‘read.csv’
    SVMPredict: no visible global function definition for ‘predict’
    SVMPredict: no visible global function definition for ‘write.csv’
    SVMTrain: no visible global function definition for ‘read.csv’
    TopologicSims: no visible global function definition for ‘read.csv’
    TopologicSims: no visible global function definition for ‘write.csv’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64

Version: 1.7
Check: examples
Result: ERROR
    Running examples in ‘ppiPre-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: AASim
    > ### Title: Compute Adamic-Adar Index Between Two Nodes in PPI Network
    > ### Aliases: AASim
    > ### Keywords: manip
    >
    > ### ** Examples
    >
    > edges <- data.frame(node1=c("1132", "1133", "1134", "1134", "1145", "1147", "1147", "1147"),
    + node2=c("1134", "1134", "1145", "1147", "1147", "1148", "1149", "1150"))
    > graph<-igraph::graph.data.frame(edges,directed=FALSE)
    > AASim("1134","1147",graph)
    Error in `[<-.igraph.vs`(`*tmp*`, 1, value = 9) : invalid indexing
    Calls: AASim -> [<- -> [<-.igraph.vs
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.7
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     ‘org.Ag.eg.db’ ‘org.Pt.eg.db’ ‘org.Rn.eg.db’ ‘org.Ss.eg.db’
     ‘org.At.tair.db’ ‘org.Bt.eg.db’ ‘org.Ce.eg.db’ ‘org.Cf.eg.db’
     ‘org.Dm.eg.db’ ‘org.Dr.eg.db’ ‘org.EcK12.eg.db’ ‘org.EcSakai.eg.db’
     ‘org.Gg.eg.db’ ‘org.Mmu.eg.db’ ‘org.Pf.plasmo.db’ ‘org.Xl.eg.db’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.7
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     'org.Ag.eg.db' 'org.Pt.eg.db' 'org.Rn.eg.db' 'org.Ss.eg.db'
     'org.Bt.eg.db' 'org.Ce.eg.db' 'org.Cf.eg.db' 'org.Dr.eg.db'
     'org.EcK12.eg.db' 'org.EcSakai.eg.db' 'org.Gg.eg.db' 'org.Mmu.eg.db'
     'org.Pf.plasmo.db' 'org.Xl.eg.db'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 1.7
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     ‘org.Sc.sgd.db’ ‘org.Ag.eg.db’ ‘org.Pt.eg.db’ ‘org.Rn.eg.db’
     ‘org.Ss.eg.db’ ‘org.At.tair.db’ ‘org.Bt.eg.db’ ‘org.Ce.eg.db’
     ‘org.Cf.eg.db’ ‘org.Dm.eg.db’ ‘org.Dr.eg.db’ ‘org.EcK12.eg.db’
     ‘org.EcSakai.eg.db’ ‘org.Gg.eg.db’ ‘org.Mmu.eg.db’ ‘org.Pf.plasmo.db’
     ‘org.Xl.eg.db’
Flavor: r-patched-solaris-sparc

Version: 1.7
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     ‘org.Ag.eg.db’ ‘org.Pt.eg.db’ ‘org.Rn.eg.db’ ‘org.Ss.eg.db’
     ‘org.Bt.eg.db’ ‘org.Ce.eg.db’ ‘org.Cf.eg.db’ ‘org.Dm.eg.db’
     ‘org.Dr.eg.db’ ‘org.EcSakai.eg.db’ ‘org.Gg.eg.db’ ‘org.Mmu.eg.db’
     ‘org.Pf.plasmo.db’ ‘org.Xl.eg.db’
Flavor: r-patched-solaris-x86

Version: 1.7
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     ‘KEGG.db’ ‘org.Hs.eg.db’ ‘org.Sc.sgd.db’ ‘org.Ag.eg.db’
     ‘org.Pt.eg.db’ ‘org.Rn.eg.db’ ‘org.Ss.eg.db’ ‘org.At.tair.db’
     ‘org.Bt.eg.db’ ‘org.Ce.eg.db’ ‘org.Cf.eg.db’ ‘org.Dm.eg.db’
     ‘org.Dr.eg.db’ ‘org.EcK12.eg.db’ ‘org.EcSakai.eg.db’ ‘org.Gg.eg.db’
     ‘org.Mm.eg.db’ ‘org.Mmu.eg.db’ ‘org.Pf.plasmo.db’ ‘org.Xl.eg.db’
Flavor: r-release-osx-x86_64-mavericks