CRAN Package Check Results for Package prabclus

Last updated on 2014-07-29 08:49:38.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.2-4 1.42 42.11 43.53 NOTE
r-devel-linux-x86_64-debian-gcc 2.2-4 1.32 40.12 41.44 NOTE
r-devel-linux-x86_64-fedora-clang 2.2-4 90.68 NOTE
r-devel-linux-x86_64-fedora-gcc 2.2-4 86.91 NOTE
r-devel-osx-x86_64-clang 2.2-4 75.52 NOTE
r-devel-windows-ix86+x86_64 2.2-4 5.00 60.00 65.00 NOTE
r-patched-linux-x86_64 2.2-4 1.30 40.83 42.13 NOTE
r-patched-solaris-sparc 2.2-4 526.40 NOTE
r-patched-solaris-x86 2.2-4 108.40 NOTE
r-release-linux-ix86 2.2-4 1.78 53.16 54.94 NOTE
r-release-linux-x86_64 2.2-4 1.32 41.94 43.26 NOTE
r-release-osx-x86_64-mavericks 2.2-4 ERROR
r-release-windows-ix86+x86_64 2.2-4 5.00 61.00 66.00 NOTE
r-oldrel-windows-ix86+x86_64 2.2-4 5.00 65.00 70.00 NOTE

Check Details

Version: 2.2-4
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     MASS mclust
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.2-4
Check: Rd line widths
Result: NOTE
    Rd file 'alleleconvert.Rd':
     \examples lines wider than 100 characters:
     cbind(c("I1","I1","I2","I2","I3","I3"),c("122","144","122","122","144","144"),c("0","0","21","33","35","44"))
     alleleconvert(strmatrix=strucmatrix,format.in="structure",format.out="prabclus",orig.nachar="0",firstcolname=TRUE)
     alleleconvert(strmatrix=strucmatrix,format.in="structure",format.out="structurama",orig.nachar="0",new.nachar="-9",firstcolname=TRUE)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.2-4
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: spdep maptools
Flavor: r-release-osx-x86_64-mavericks

Version: 2.2-4
Check: R code for possible problems
Result: NOTE
    build.nblist: no visible global function definition for nb2listw
    prab.sarestimate: no visible global function definition for
     errorsarlm
Flavor: r-release-osx-x86_64-mavericks

Version: 2.2-4
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: spdep
Flavor: r-release-osx-x86_64-mavericks

Version: 2.2-4
Check: tests
Result: ERROR
    Running the tests in tests/prabclustests.R failed.
    Last 13 lines of output:
     + file.format="decimal2",neighbors=TRUE)
     > vei <- prabinit(prabmatrix=veronica[1:50,],
     + neighborhood=vnb$nblist,nbbetweenregions=FALSE,
     + distance="jaccard")
     > print(vei)
     Presence-absence matrix object with
     50 species and 583 regions,
     including species/individuals neighborhoods and
     between-species distance matrix of type jaccard .
     >
     > library(spdep)
     Error in library(spdep) : there is no package called 'spdep'
     Execution halted
Flavor: r-release-osx-x86_64-mavericks