CRAN Package Check Results for Package prabclus

Last updated on 2015-08-29 06:47:49.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.2-6 1.17 38.34 39.52 NOTE
r-devel-linux-x86_64-debian-gcc 2.2-6 1.22 36.11 37.33 NOTE
r-devel-linux-x86_64-fedora-clang 2.2-6 76.75 NOTE
r-devel-linux-x86_64-fedora-gcc 2.2-6 71.83 NOTE
r-devel-osx-x86_64-clang 2.2-6 64.53 NOTE
r-devel-windows-ix86+x86_64 2.2-6 9.00 76.00 85.00 NOTE
r-patched-linux-x86_64 2.2-6 1.48 37.64 39.12 NOTE
r-patched-solaris-sparc 2.2-6 537.50 NOTE
r-patched-solaris-x86 2.2-6 101.10 NOTE
r-release-linux-x86_64 2.2-6 1.23 37.17 38.40 NOTE
r-release-osx-x86_64-mavericks 2.2-6 OK
r-release-windows-ix86+x86_64 2.2-6 7.00 69.00 76.00 OK
r-oldrel-windows-ix86+x86_64 2.2-6 7.00 83.00 90.00 OK

Check Details

Version: 2.2-6
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     print.alleleobject print.comprabclust print.nnclean print.prab
     print.prabclust print.summary.prabtest summary.prabtest
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.2-6
Check: R code for possible problems
Result: NOTE
    NNclean: no visible global function definition for ‘dist’
    NNclean: no visible global function definition for ‘hist’
    NNclean: no visible global function definition for ‘box’
    NNclean: no visible global function definition for ‘lines’
    abundtest: no visible global function definition for ‘as.dist’
    alleleconvert: no visible global function definition for ‘read.table’
    alleleconvert: no visible global function definition for ‘write.table’
    alleleinit: no visible global function definition for ‘read.table’
    autoreg: no visible global function definition for ‘lm’
    autoreg: no visible global function definition for ‘abline’
    cluspop.nb: no visible global function definition for ‘runif’
    comp.test: no visible global function definition for ‘chisq.test’
    coord2dist: no visible global function definition for ‘read.table’
    coord2dist: no visible global function definition for ‘as.dist’
    geco: no visible global function definition for ‘as.dist’
    homogen.test: no visible global function definition for ‘ppois’
    homogen.test: no visible global function definition for ‘pnorm’
    hprabclust: no visible global function definition for ‘cmdscale’
    hprabclust: no visible global function definition for ‘as.dist’
    hprabclust: no visible global function definition for ‘hclust’
    hprabclust: no visible global function definition for ‘cutree’
    hprabclust: no visible global function definition for ‘plot’
    lociplots: no visible global function definition for ‘plot’
    lociplots: no visible global function definition for ‘grey’
    prab.sarestimate: no visible global function definition for ‘coef’
    prab.sarestimate: no visible global function definition for ‘lm’
    prabclust: no visible global function definition for ‘cmdscale’
    prabclust: no visible global function definition for ‘plot’
    prabinit: no visible global function definition for ‘read.table’
    prabinit: no visible global function definition for ‘median’
    prabinit: no visible global function definition for ‘mad’
    randpop.nb: no visible global function definition for ‘runif’
    regpop.sar: no visible global function definition for ‘runif’
    regpop.sar: no visible global function definition for ‘rnorm’
    Undefined global functions or variables:
     abline as.dist box chisq.test cmdscale coef cutree dist grey hclust
     hist lines lm mad median plot pnorm ppois read.table rnorm runif
     write.table
    Consider adding
     importFrom("grDevices", "grey")
     importFrom("graphics", "abline", "box", "hist", "lines", "plot")
     importFrom("stats", "as.dist", "chisq.test", "cmdscale", "coef",
     "cutree", "dist", "hclust", "lm", "mad", "median", "pnorm",
     "ppois", "rnorm", "runif")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64