CRAN Package Check Results for Package prabclus

Last updated on 2014-10-23 21:46:44.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.2-4 1.34 40.45 41.79 NOTE
r-devel-linux-x86_64-debian-gcc 2.2-4 1.28 38.96 40.24 NOTE
r-devel-linux-x86_64-fedora-clang 2.2-4 85.62 NOTE
r-devel-linux-x86_64-fedora-gcc 2.2-4 79.59 NOTE
r-devel-osx-x86_64-clang 2.2-4 77.28 NOTE
r-devel-windows-ix86+x86_64 2.2-4 5.00 57.00 62.00 NOTE
r-patched-linux-x86_64 2.2-4 1.32 42.08 43.41 NOTE
r-patched-solaris-sparc 2.2-4 540.00 NOTE
r-patched-solaris-x86 2.2-4 109.40 NOTE
r-release-linux-ix86 2.2-4 1.81 54.00 55.81 NOTE
r-release-linux-x86_64 2.2-4 1.32 43.69 45.02 NOTE
r-release-osx-x86_64-mavericks 2.2-4 ERROR
r-release-windows-ix86+x86_64 2.2-4 4.00 65.00 69.00 NOTE
r-oldrel-windows-ix86+x86_64 2.2-4 5.00 67.00 72.00 NOTE

Check Details

Version: 2.2-4
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘MASS’ ‘mclust’
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.2-4
Check: R code for possible problems
Result: NOTE
    build.nblist: no visible global function definition for ‘nb2listw’
    prab.sarestimate: no visible global function definition for
     ‘errorsarlm’
    regpop.sar: no visible global function definition for ‘rmvnorm’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 2.2-4
Check: Rd line widths
Result: NOTE
    Rd file 'alleleconvert.Rd':
     \examples lines wider than 100 characters:
     cbind(c("I1","I1","I2","I2","I3","I3"),c("122","144","122","122","144","144"),c("0","0","21","33","35","44"))
     alleleconvert(strmatrix=strucmatrix,format.in="structure",format.out="prabclus",orig.nachar="0",firstcolname=TRUE)
     alleleconvert(strmatrix=strucmatrix,format.in="structure",format.out="structurama",orig.nachar="0",new.nachar="-9",firstcolname=TRUE)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.2-4
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘spdep’ ‘maptools’
Flavor: r-release-osx-x86_64-mavericks

Version: 2.2-4
Check: R code for possible problems
Result: NOTE
    build.nblist: no visible global function definition for ‘nb2listw’
    prab.sarestimate: no visible global function definition for
     ‘errorsarlm’
Flavor: r-release-osx-x86_64-mavericks

Version: 2.2-4
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘spdep’
Flavor: r-release-osx-x86_64-mavericks

Version: 2.2-4
Check: tests
Result: ERROR
    Running the tests in ‘tests/prabclustests.R’ failed.
    Last 13 lines of output:
     + file.format="decimal2",neighbors=TRUE)
     > vei <- prabinit(prabmatrix=veronica[1:50,],
     + neighborhood=vnb$nblist,nbbetweenregions=FALSE,
     + distance="jaccard")
     > print(vei)
     Presence-absence matrix object with
     50 species and 583 regions,
     including species/individuals neighborhoods and
     between-species distance matrix of type jaccard .
     >
     > library(spdep)
     Error in library(spdep) : there is no package called 'spdep'
     Execution halted
Flavor: r-release-osx-x86_64-mavericks