CRAN Package Check Results for Package prabclus

Last updated on 2015-05-30 03:48:53.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.2-6 1.34 38.06 39.39 NOTE
r-devel-linux-x86_64-debian-gcc 2.2-6 1.29 36.57 37.86 NOTE
r-devel-linux-x86_64-fedora-clang 2.2-6 77.99 NOTE
r-devel-linux-x86_64-fedora-gcc 2.2-6 72.61 NOTE
r-devel-osx-x86_64-clang 2.2-6 69.63 NOTE
r-devel-windows-ix86+x86_64 2.2-6 6.00 62.00 68.00 OK
r-patched-linux-x86_64 2.2-6 1.23 36.88 38.11 NOTE
r-patched-solaris-sparc 2.2-6 527.30 NOTE
r-patched-solaris-x86 2.2-6 99.90 NOTE
r-release-linux-x86_64 2.2-6 1.22 37.35 38.57 NOTE
r-release-osx-x86_64-mavericks 2.2-6 OK
r-release-osx-x86_64-snowleopard 2.2-6 ERROR
r-release-windows-ix86+x86_64 2.2-6 5.00 59.00 64.00 OK
r-oldrel-windows-ix86+x86_64 2.2-6 4.00 59.00 63.00 OK

Check Details

Version: 2.2-6
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     print.alleleobject print.comprabclust print.nnclean print.prab
     print.prabclust print.summary.prabtest summary.prabtest
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.2-6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘spdep’
Flavor: r-release-osx-x86_64-snowleopard

Version: 2.2-6
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘spdep’
Flavor: r-release-osx-x86_64-snowleopard

Version: 2.2-6
Check: tests
Result: ERROR
    Running the tests in ‘tests/prabclustests.R’ failed.
    Last 13 lines of output:
     + file.format="decimal2",neighbors=TRUE)
     > vei <- prabinit(prabmatrix=veronica[1:50,],
     + neighborhood=vnb$nblist,nbbetweenregions=FALSE,
     + distance="jaccard")
     > print(vei)
     Presence-absence matrix object with
     50 species and 583 regions,
     including species/individuals neighborhoods and
     between-species distance matrix of type jaccard .
     >
     > library(spdep)
     Error in library(spdep) : there is no package called 'spdep'
     Execution halted
Flavor: r-release-osx-x86_64-snowleopard