CRAN Package Check Results for Package protViz

Last updated on 2014-09-02 08:47:22.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.98 10.10 54.42 64.52 NOTE
r-devel-linux-x86_64-debian-gcc 0.1.98 12.62 51.11 63.74 NOTE
r-devel-linux-x86_64-fedora-clang 0.1.98 131.21 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.98 128.63 NOTE
r-devel-osx-x86_64-clang 0.1.98 112.38 NOTE
r-devel-windows-ix86+x86_64 0.1.98 42.00 110.00 152.00 NOTE
r-patched-linux-x86_64 0.1.98 12.47 55.06 67.52 OK
r-patched-solaris-sparc 0.1.98 624.70 OK
r-patched-solaris-x86 0.1.98 148.70 OK
r-release-linux-ix86 0.1.98 16.54 68.15 84.70 OK
r-release-linux-x86_64 0.1.98 12.54 53.32 65.86 OK
r-release-osx-x86_64-mavericks 0.1.98 NOTE
r-release-osx-x86_64-snowleopard 0.1.98 OK
r-release-windows-ix86+x86_64 0.1.98 44.00 106.00 150.00 OK
r-oldrel-windows-ix86+x86_64 0.1.98 59.00 100.00 159.00 OK

Check Details

Version: 0.1.98
Check: R code for possible problems
Result: NOTE
    .deisotoperUtilPlot : <anonymous>: no visible binding for global
     variable ‘averagine’
    .normalize_rt: no visible binding for global variable ‘iRTpeptides’
    deisotoper: no visible binding for global variable ‘averagine’
    deisotoper : <anonymous>: no visible binding for global variable
     ‘averagine’
    genSwathIonLib: no visible binding for global variable ‘iRTpeptides’
    genSwathIonLib: no visible binding for global variable ‘AA’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 0.1.98
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'PTM_MarkerFinder.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `pstricks.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    _test/protViz/vignettes/PTM_MarkerFinder.tex:7: ==> Fatal error occurred, no o
    utput PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks