CRAN Package Check Results for Package protViz

Last updated on 2015-09-01 16:49:36.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.9 10.46 38.58 49.05 NOTE
r-devel-linux-x86_64-debian-gcc 0.2.9 12.28 39.67 51.95 NOTE
r-devel-linux-x86_64-fedora-clang 0.2.9 100.49 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2.9 98.33 NOTE
r-devel-osx-x86_64-clang 0.2.9 82.12 OK
r-devel-windows-ix86+x86_64 0.2.9 51.00 130.00 181.00 NOTE
r-patched-linux-x86_64 0.2.9 12.75 42.38 55.13 OK
r-patched-solaris-sparc 0.2.9 614.70 OK
r-patched-solaris-x86 0.2.9 131.10 OK
r-release-linux-x86_64 0.2.9 12.60 42.67 55.27 OK
r-release-osx-x86_64-mavericks 0.2.9 OK
r-release-windows-ix86+x86_64 0.2.9 61.00 116.00 177.00 OK
r-oldrel-windows-ix86+x86_64 0.2.9 56.00 135.00 191.00 OK

Check Details

Version: 0.2.9
Check: R code for possible problems
Result: NOTE
    .PTM_MarkerFinder_no_peakplot : <anonymous>: no visible global function
     definition for ‘split.screen’
    .PTM_MarkerFinder_no_peakplot : <anonymous>: no visible global function
     definition for ‘screen’
    .PTM_MarkerFinder_no_peakplot : <anonymous>: no visible global function
     definition for ‘plot’
    .PTM_MarkerFinder_no_peakplot : <anonymous>: no visible global function
     definition for ‘points’
    .PTM_MarkerFinder_no_peakplot : <anonymous>: no visible global function
     definition for ‘legend’
    .PTM_MarkerFinder_no_peakplot : <anonymous>: no visible global function
     definition for ‘pie’
    .PTM_MarkerFinder_no_peakplot : <anonymous>: no visible global function
     definition for ‘axis’
    .PTM_MarkerFinder_no_peakplot : <anonymous>: no visible global function
     definition for ‘abline’
    .PTM_MarkerFinder_no_peakplot : <anonymous>: no visible global function
     definition for ‘close.screen’
    .PTM_MarkerFinder_summaryPlot: no visible global function definition
     for ‘plot’
    .PTM_MarkerFinder_summaryPlot: no visible global function definition
     for ‘legend’
    .PTM_MarkerFinder_summaryPlot: no visible global function definition
     for ‘packageVersion’
    .PTM_MarkerFinder_summaryPlot: no visible global function definition
     for ‘par’
    .PTM_MarkerFinder_summaryPlot : <anonymous>: no visible global function
     definition for ‘plot’
    .PTM_MarkerFinder_summaryPlot : <anonymous>: no visible global function
     definition for ‘text’
    .PTM_MarkerFinder_summaryPlot : <anonymous>: no visible global function
     definition for ‘pie’
    .PTM_MarkerFinder_summaryPlot: no visible global function definition
     for ‘boxplot’
    .PTM_MarkerFinder_summaryPlot: no visible global function definition
     for ‘box’
    .PTM_MarkerFinder_summaryPlot: no visible global function definition
     for ‘abline’
    .PTM_MarkerFinder_summaryPlot: no visible global function definition
     for ‘barplot’
    .PTM_MarkerFinder_writeMGF_Header: no visible global function
     definition for ‘packageVersion’
    .de_novo: no visible global function definition for ‘rainbow’
    .de_novo: no visible global function definition for ‘plot’
    .de_novo: no visible global function definition for ‘abline’
    .de_novo: no visible global function definition for ‘segments’
    .de_novo: no visible global function definition for ‘dist’
    .de_novo: no visible global function definition for ‘points’
    .de_novo: no visible global function definition for ‘text’
    .deisotoperUtilPlot: no visible global function definition for ‘par’
    .deisotoperUtilPlot : <anonymous>: no visible global function
     definition for ‘plot’
    .deisotoperUtilPlot : <anonymous>: no visible global function
     definition for ‘text’
    .deisotoperUtilPlot : <anonymous>: no visible global function
     definition for ‘axis’
    .deisotoperUtilPlot : <anonymous>: no visible global function
     definition for ‘points’
    .deisotoperUtilPlot : <anonymous>: no visible global function
     definition for ‘legend’
    .deisotoperUtilPlot : <anonymous>: no visible global function
     definition for ‘box’
    .gasPhaseFragQuantiles: no visible global function definition for
     ‘hist’
    .gasPhaseFragQuantiles: no visible global function definition for
     ‘quantile’
    .gasPhaseFragQuantiles: no visible global function definition for
     ‘axis’
    .peakplot.label: no visible global function definition for ‘points’
    .peakplot.pie: no visible global function definition for ‘pie’
    .peakplot.putlabel: no visible global function definition for
     ‘segments’
    .peakplot.putlabel: no visible global function definition for ‘text’
    PTM_MarkerFinder: no visible global function definition for
     ‘split.screen’
    PTM_MarkerFinder: no visible global function definition for ‘screen’
    PTM_MarkerFinder: no visible global function definition for ‘par’
    PTM_MarkerFinder: no visible global function definition for ‘plot’
    PTM_MarkerFinder: no visible global function definition for ‘points’
    PTM_MarkerFinder: no visible global function definition for ‘legend’
    PTM_MarkerFinder: no visible global function definition for ‘text’
    PTM_MarkerFinder: no visible global function definition for ‘pie’
    PTM_MarkerFinder: no visible global function definition for ‘axis’
    PTM_MarkerFinder: no visible global function definition for ‘abline’
    PTM_MarkerFinder: no visible global function definition for
     ‘close.screen’
    PTM_MarkerFinder_util: no visible global function definition for ‘pdf’
    PTM_MarkerFinder_util: no visible global function definition for
     ‘dev.off’
    PTM_MarkerFinder_util: no visible global function definition for
     ‘reshape’
    PTM_MarkerFinder_util: no visible global function definition for
     ‘write.table’
    deisotoper: no visible global function definition for ‘rainbow’
    deisotoper : <anonymous>: no visible global function definition for
     ‘par’
    deisotoper : <anonymous> : <anonymous>: no visible global function
     definition for ‘points’
    deisotoper : <anonymous> : <anonymous>: no visible global function
     definition for ‘text’
    genMod: no visible global function definition for ‘combn’
    iTRAQ2GroupAnalysis: no visible global function definition for ‘t.test’
    iTRAQ2GroupAnalysis: no visible global function definition for
     ‘boxplot’
    iTRAQ2GroupAnalysis: no visible global function definition for ‘box’
    iTRAQ2GroupAnalysis: no visible global function definition for ‘axis’
    iTRAQ2GroupAnalysis: no visible global function definition for ‘points’
    lcmsmap: no visible global function definition for ‘plot’
    lcmsmap: no visible global function definition for ‘points’
    lcmsmap: no visible global function definition for ‘rgb’
    lcmsmap: no visible global function definition for ‘legend’
    mdp: no visible global function definition for ‘sd’
    mdp: no visible global function definition for ‘hist’
    mdp: no visible global function definition for ‘rect’
    mdp: no visible global function definition for ‘rgb’
    mdp: no visible global function definition for ‘abline’
    mdp: no visible global function definition for ‘axis’
    mdp: no visible global function definition for ‘dnorm’
    mdp: no visible global function definition for ‘lines’
    mdp: no visible global function definition for ‘legend’
    peakplot: no visible global function definition for ‘plot’
    peakplot: no visible global function definition for ‘axis’
    peakplot: no visible global function definition for ‘box’
    pgImporter: no visible global function definition for ‘read.table’
    pgLFQaov: no visible global function definition for ‘aov’
    pgLFQaov: no visible global function definition for ‘boxplot’
    pgLFQtNpq: no visible global function definition for ‘image’
    pgLFQtNpq: no visible global function definition for ‘cor’
    pgLFQtNpq: no visible global function definition for ‘gray.colors’
    ppp: no visible global function definition for ‘par’
    ppp: no visible global function definition for ‘rainbow’
    ppp: no visible global function definition for ‘plot’
    ppp: no visible global function definition for ‘abline’
    ppp: no visible global function definition for ‘axis’
    ppp: no visible global function definition for ‘lines’
    ppp: no visible global function definition for ‘legend’
    psm: no visible global function definition for ‘abline’
    psm: no visible global function definition for ‘text’
    psm: no visible global function definition for ‘legend’
    Undefined global functions or variables:
     abline aov axis barplot box boxplot close.screen combn cor dev.off
     dist dnorm gray.colors hist image legend lines packageVersion par pdf
     pie plot points quantile rainbow read.table rect reshape rgb screen
     sd segments split.screen t.test text write.table
    Consider adding
     importFrom("grDevices", "dev.off", "gray.colors", "pdf", "rainbow",
     "rgb")
     importFrom("graphics", "abline", "axis", "barplot", "box", "boxplot",
     "close.screen", "hist", "image", "legend", "lines", "par",
     "pie", "plot", "points", "rect", "screen", "segments",
     "split.screen", "text")
     importFrom("stats", "aov", "cor", "dist", "dnorm", "quantile",
     "reshape", "sd", "t.test")
     importFrom("utils", "combn", "packageVersion", "read.table",
     "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64