CRAN Package Check Results for Package protViz

Last updated on 2014-09-18 14:47:01.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.98 10.56 53.09 63.65 NOTE
r-devel-linux-x86_64-debian-gcc 0.1.98 13.65 53.23 66.88 NOTE
r-devel-linux-x86_64-fedora-clang 0.2.06 75.07 OK
r-devel-linux-x86_64-fedora-gcc 0.2.06 73.10 OK
r-devel-osx-x86_64-clang 0.2.06 113.80 OK
r-devel-windows-ix86+x86_64 0.1.98 39.00 101.00 140.00 NOTE
r-patched-linux-x86_64 0.1.98 12.64 55.11 67.76 OK
r-patched-solaris-sparc 0.2.06 571.20 OK
r-patched-solaris-x86 0.2.06 120.50 OK
r-release-linux-ix86 0.1.98 16.31 66.12 82.43 OK
r-release-linux-x86_64 0.1.98 12.76 57.54 70.30 OK
r-release-osx-x86_64-mavericks 0.1.98 NOTE
r-release-osx-x86_64-snowleopard 0.1.98 OK
r-release-windows-ix86+x86_64 0.1.98 41.00 119.00 160.00 OK
r-oldrel-windows-ix86+x86_64 0.1.98 42.00 104.00 146.00 OK

Check Details

Version: 0.1.98
Check: R code for possible problems
Result: NOTE
    .deisotoperUtilPlot : <anonymous>: no visible binding for global
     variable ‘averagine’
    .normalize_rt: no visible binding for global variable ‘iRTpeptides’
    deisotoper: no visible binding for global variable ‘averagine’
    deisotoper : <anonymous>: no visible binding for global variable
     ‘averagine’
    genSwathIonLib: no visible binding for global variable ‘iRTpeptides’
    genSwathIonLib: no visible binding for global variable ‘AA’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 0.1.98
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'PTM_MarkerFinder.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `pstricks.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    _test/protViz/vignettes/PTM_MarkerFinder.tex:7: ==> Fatal error occurred, no o
    utput PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks