CRAN Package Check Results for Package protViz

Last updated on 2014-08-23 20:47:00.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.98 10.15 52.91 63.06 NOTE
r-devel-linux-x86_64-debian-gcc 0.1.98 12.76 51.43 64.19 NOTE
r-devel-linux-x86_64-fedora-clang 0.1.98 132.75 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.98 128.05 NOTE
r-devel-osx-x86_64-clang 0.1.98 111.54 NOTE
r-devel-windows-ix86+x86_64 0.1.98 40.00 103.00 143.00 OK
r-patched-linux-x86_64 0.1.98 12.64 52.47 65.11 OK
r-patched-solaris-sparc 0.1.98 624.70 OK
r-patched-solaris-x86 0.1.98 148.60 OK
r-release-linux-ix86 0.1.98 16.46 65.58 82.04 OK
r-release-linux-x86_64 0.1.98 12.91 53.05 65.96 OK
r-release-osx-x86_64-mavericks 0.1.98 NOTE
r-release-osx-x86_64-snowleopard 0.1.98 OK
r-release-windows-ix86+x86_64 0.1.98 47.00 108.00 155.00 OK
r-oldrel-windows-ix86+x86_64 0.1.98 45.00 106.00 151.00 OK

Check Details

Version: 0.1.98
Check: R code for possible problems
Result: NOTE
    .deisotoperUtilPlot : <anonymous>: no visible binding for global
     variable ‘averagine’
    .normalize_rt: no visible binding for global variable ‘iRTpeptides’
    deisotoper: no visible binding for global variable ‘averagine’
    deisotoper : <anonymous>: no visible binding for global variable
     ‘averagine’
    genSwathIonLib: no visible binding for global variable ‘iRTpeptides’
    genSwathIonLib: no visible binding for global variable ‘AA’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 0.1.98
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'PTM_MarkerFinder.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `pstricks.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    _test/protViz/vignettes/PTM_MarkerFinder.tex:7: ==> Fatal error occurred, no o
    utput PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks