CRAN Package Check Results for Package proteomicdesign

Last updated on 2015-07-04 06:47:43.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0 0.66 15.70 16.36 NOTE
r-devel-linux-x86_64-debian-gcc 2.0 0.63 15.66 16.29 NOTE
r-devel-linux-x86_64-fedora-clang 2.0 30.92 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0 29.09 NOTE
r-devel-osx-x86_64-clang 2.0 29.54 NOTE
r-devel-windows-ix86+x86_64 2.0 5.00 25.00 30.00 NOTE
r-patched-linux-x86_64 2.0 0.67 15.90 16.57 NOTE
r-patched-solaris-sparc 2.0 220.40 NOTE
r-patched-solaris-x86 2.0 42.50 NOTE
r-release-linux-x86_64 2.0 0.76 16.14 16.91 NOTE
r-release-osx-x86_64-mavericks 2.0 NOTE
r-release-windows-ix86+x86_64 2.0 6.00 27.00 33.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0 4.00 28.00 32.00 NOTE

Check Details

Version: 2.0
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘MASS’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    Ftest.Ttest: no visible binding for global variable ‘sd’
    Ftest.Ttest: no visible global function definition for ‘pt’
    Ftest.Ttest: no visible global function definition for ‘var’
    Ftest.Ttest: no visible global function definition for ‘pf’
    Ttest: no visible binding for global variable ‘sd’
    Ttest: no visible global function definition for ‘pt’
    do.one.experiment: no visible global function definition for
     ‘power.t.test’
    do.one.experiment.t: no visible global function definition for
     ‘power.t.test’
    optim.two.stage.appr: no visible global function definition for
     ‘mvrnorm’
    optim.two.stage.appr: no visible global function definition for ‘var’
    optim.two.stage.appr: no visible global function definition for ‘runif’
    optim.two.stage.appr: no visible global function definition for ‘pbeta’
    optim.two.stage.appr: no visible global function definition for ‘optim’
    optim.two.stage.group: no visible global function definition for
     ‘mvrnorm’
    optim.two.stage.group: no visible global function definition for
     ‘runif’
    optim.two.stage.group: no visible global function definition for
     ‘pbeta’
    optim.two.stage.group: no visible global function definition for
     ‘optim’
    optim.two.stage.single: no visible global function definition for
     ‘mvrnorm’
    optim.two.stage.single: no visible global function definition for
     ‘runif’
    optim.two.stage.single: no visible global function definition for
     ‘pbeta’
    optim.two.stage.single: no visible global function definition for
     ‘optim’
    power: no visible global function definition for ‘par’
    power: no visible global function definition for ‘hist’
    power: no visible global function definition for ‘plot’
    power.appr: no visible global function definition for ‘qt’
    power.appr: no visible global function definition for ‘pt’
    power.appr: no visible global function definition for ‘var’
    power.appr: no visible global function definition for ‘qf’
    power.appr: no visible global function definition for ‘pf’
    power.appr: no visible global function definition for ‘dt’
    power.appr: no visible global function definition for ‘splinefun’
    power.appr: no visible global function definition for ‘integrate’
    power.group.cost: no visible global function definition for ‘mvrnorm’
    power.group.cost : Ftest.Ttest: no visible binding for global variable
     ‘sd’
    power.group.cost : Ftest.Ttest: no visible global function definition
     for ‘pt’
    power.group.cost : Ftest.Ttest: no visible global function definition
     for ‘var’
    power.group.cost : Ftest.Ttest: no visible global function definition
     for ‘pf’
    power.group.cost : do.one.experiment: no visible global function
     definition for ‘power.t.test’
    power.group.cost: no visible global function definition for ‘par’
    power.group.cost: no visible global function definition for ‘hist’
    power.group.cost: no visible global function definition for ‘plot’
    power.single.cost: no visible global function definition for ‘mvrnorm’
    power.single.cost : Ttest: no visible binding for global variable ‘sd’
    power.single.cost : Ttest: no visible global function definition for
     ‘pt’
    power.single.cost : do.one.experiment.t: no visible global function
     definition for ‘power.t.test’
    power.single.cost: no visible global function definition for ‘par’
    power.single.cost: no visible global function definition for ‘hist’
    power.single.cost: no visible global function definition for ‘plot’
    power.t: no visible global function definition for ‘par’
    power.t: no visible global function definition for ‘hist’
    power.t: no visible global function definition for ‘plot’
    Undefined global functions or variables:
     dt hist integrate mvrnorm optim par pbeta pf plot power.t.test pt qf
     qt runif sd splinefun var
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.0
Check: Rd line widths
Result: NOTE
    Rd file 'optim.two.stage.appr.Rd':
     \usage lines wider than 90 characters:
     optim.two.stage.appr(budget, protein, n1, artifact, iter.number, assaycost2.function, assaycost3.function, recruit = 100, a1.t.min = 0. ... [TRUNCATED]
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
     optim.two.stage.appr(budget=500000,protein=protein,n1=30,artifact=rep(1,5),iter.number=1,assaycost2.function=assaycost2,assaycost3.func ... [TRUNCATED]
    
    Rd file 'optim.two.stage.group.Rd':
     \usage lines wider than 90 characters:
     optim.two.stage.group(budget, protein, n1, artifact, iter.number, assaycost2.function, assaycost3.function, recruit = 100, s = 1000, a1 ... [TRUNCATED]
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
     optim.two.stage.group(budget=500000,protein=protein,n1=60,artifact=rep(1,5),iter.number=1,assaycost2.function=assaycost2,assaycost3.fun ... [TRUNCATED]
    
    Rd file 'optim.two.stage.single.Rd':
     \usage lines wider than 90 characters:
     optim.two.stage.single(budget, protein, n1, artifact, iter.number, assaycost2.function, assaycost3.function, recruit = 100, s = 1000, a ... [TRUNCATED]
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4))
     optim.two.stage.single(budget=500000,artifact=rep(1,5),protein=protein,n1=30,iter.number=1,assaycost2.function=assaycost2,assaycost3.fu ... [TRUNCATED]
    
    Rd file 'power.group.cost.Rd':
     \usage lines wider than 90 characters:
     power.group.cost(initial, protein, n1, artifact, budget, s, assaycost2.function, assaycost3.function, recruit, optimize = FALSE)
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
     power.group.cost(initial,protein=protein,artifact=rep(1,5),n1=30,budget=500000,s=1000,assaycost2.function=assaycost2,assaycost3.functio ... [TRUNCATED]
    
    Rd file 'power.single.cost.Rd':
     \usage lines wider than 90 characters:
     power.single.cost(initial, protein, n1, artifact, budget, s, assaycost2.function, assaycost3.function, recruit, optimize = FALSE)
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
     power.single.cost(initial,protein=protein,artifact=rep(1,5),n1=30,budget=500000,s=1000,assaycost2.function=assaycost2,assaycost3.functi ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    optim.two.stage.appr: no visible global function definition for
     ‘mvrnorm’
    optim.two.stage.group: no visible global function definition for
     ‘mvrnorm’
    optim.two.stage.single: no visible global function definition for
     ‘mvrnorm’
    power.group.cost: no visible global function definition for ‘mvrnorm’
    power.single.cost: no visible global function definition for ‘mvrnorm’
    Undefined global functions or variables:
     mvrnorm
Flavor: r-devel-osx-x86_64-clang

Version: 2.0
Check: R code for possible problems
Result: NOTE
    optim.two.stage.appr: no visible global function definition for
     ‘mvrnorm’
    optim.two.stage.group: no visible global function definition for
     ‘mvrnorm’
    optim.two.stage.single: no visible global function definition for
     ‘mvrnorm’
    power.group.cost: no visible global function definition for ‘mvrnorm’
    power.single.cost: no visible global function definition for ‘mvrnorm’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64