CRAN Package Check Results for Package proteomicdesign

Last updated on 2015-08-29 06:47:50.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0 0.67 15.88 16.54 NOTE
r-devel-linux-x86_64-debian-gcc 2.0 0.62 15.43 16.06 NOTE
r-devel-linux-x86_64-fedora-clang 2.0 31.73 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0 29.27 NOTE
r-devel-osx-x86_64-clang 2.0 29.04 NOTE
r-devel-windows-ix86+x86_64 2.0 5.00 36.00 41.00 NOTE
r-patched-linux-x86_64 2.0 0.70 16.13 16.83 NOTE
r-patched-solaris-sparc 2.0 205.50 NOTE
r-patched-solaris-x86 2.0 43.00 NOTE
r-release-linux-x86_64 2.0 0.68 15.94 16.62 NOTE
r-release-osx-x86_64-mavericks 2.0 NOTE
r-release-windows-ix86+x86_64 2.0 4.00 45.00 49.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0 5.00 32.00 37.00 NOTE

Check Details

Version: 2.0
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘MASS’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    Ftest.Ttest: no visible binding for global variable ‘sd’
    Ftest.Ttest: no visible global function definition for ‘pt’
    Ftest.Ttest: no visible global function definition for ‘var’
    Ftest.Ttest: no visible global function definition for ‘pf’
    Ttest: no visible binding for global variable ‘sd’
    Ttest: no visible global function definition for ‘pt’
    do.one.experiment: no visible global function definition for
     ‘power.t.test’
    do.one.experiment.t: no visible global function definition for
     ‘power.t.test’
    optim.two.stage.appr: no visible global function definition for
     ‘mvrnorm’
    optim.two.stage.appr: no visible global function definition for ‘var’
    optim.two.stage.appr: no visible global function definition for ‘runif’
    optim.two.stage.appr: no visible global function definition for ‘pbeta’
    optim.two.stage.appr: no visible global function definition for ‘optim’
    optim.two.stage.group: no visible global function definition for
     ‘mvrnorm’
    optim.two.stage.group: no visible global function definition for
     ‘runif’
    optim.two.stage.group: no visible global function definition for
     ‘pbeta’
    optim.two.stage.group: no visible global function definition for
     ‘optim’
    optim.two.stage.single: no visible global function definition for
     ‘mvrnorm’
    optim.two.stage.single: no visible global function definition for
     ‘runif’
    optim.two.stage.single: no visible global function definition for
     ‘pbeta’
    optim.two.stage.single: no visible global function definition for
     ‘optim’
    power: no visible global function definition for ‘par’
    power: no visible global function definition for ‘hist’
    power: no visible global function definition for ‘plot’
    power.appr: no visible global function definition for ‘qt’
    power.appr: no visible global function definition for ‘pt’
    power.appr: no visible global function definition for ‘var’
    power.appr: no visible global function definition for ‘qf’
    power.appr: no visible global function definition for ‘pf’
    power.appr: no visible global function definition for ‘dt’
    power.appr: no visible global function definition for ‘splinefun’
    power.appr: no visible global function definition for ‘integrate’
    power.group.cost: no visible global function definition for ‘mvrnorm’
    power.group.cost : Ftest.Ttest: no visible binding for global variable
     ‘sd’
    power.group.cost : Ftest.Ttest: no visible global function definition
     for ‘pt’
    power.group.cost : Ftest.Ttest: no visible global function definition
     for ‘var’
    power.group.cost : Ftest.Ttest: no visible global function definition
     for ‘pf’
    power.group.cost : do.one.experiment: no visible global function
     definition for ‘power.t.test’
    power.group.cost: no visible global function definition for ‘par’
    power.group.cost: no visible global function definition for ‘hist’
    power.group.cost: no visible global function definition for ‘plot’
    power.single.cost: no visible global function definition for ‘mvrnorm’
    power.single.cost : Ttest: no visible binding for global variable ‘sd’
    power.single.cost : Ttest: no visible global function definition for
     ‘pt’
    power.single.cost : do.one.experiment.t: no visible global function
     definition for ‘power.t.test’
    power.single.cost: no visible global function definition for ‘par’
    power.single.cost: no visible global function definition for ‘hist’
    power.single.cost: no visible global function definition for ‘plot’
    power.t: no visible global function definition for ‘par’
    power.t: no visible global function definition for ‘hist’
    power.t: no visible global function definition for ‘plot’
    Undefined global functions or variables:
     dt hist integrate mvrnorm optim par pbeta pf plot power.t.test pt qf
     qt runif sd splinefun var
    Consider adding
     importFrom("graphics", "hist", "par", "plot")
     importFrom("stats", "dt", "integrate", "optim", "pbeta", "pf",
     "power.t.test", "pt", "qf", "qt", "runif", "sd",
     "splinefun", "var")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.0
Check: Rd line widths
Result: NOTE
    Rd file 'optim.two.stage.appr.Rd':
     \usage lines wider than 90 characters:
     optim.two.stage.appr(budget, protein, n1, artifact, iter.number, assaycost2.function, assaycost3.function, recruit = 100, a1.t.min = 0. ... [TRUNCATED]
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
     optim.two.stage.appr(budget=500000,protein=protein,n1=30,artifact=rep(1,5),iter.number=1,assaycost2.function=assaycost2,assaycost3.func ... [TRUNCATED]
    
    Rd file 'optim.two.stage.group.Rd':
     \usage lines wider than 90 characters:
     optim.two.stage.group(budget, protein, n1, artifact, iter.number, assaycost2.function, assaycost3.function, recruit = 100, s = 1000, a1 ... [TRUNCATED]
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
     optim.two.stage.group(budget=500000,protein=protein,n1=60,artifact=rep(1,5),iter.number=1,assaycost2.function=assaycost2,assaycost3.fun ... [TRUNCATED]
    
    Rd file 'optim.two.stage.single.Rd':
     \usage lines wider than 90 characters:
     optim.two.stage.single(budget, protein, n1, artifact, iter.number, assaycost2.function, assaycost3.function, recruit = 100, s = 1000, a ... [TRUNCATED]
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4))
     optim.two.stage.single(budget=500000,artifact=rep(1,5),protein=protein,n1=30,iter.number=1,assaycost2.function=assaycost2,assaycost3.fu ... [TRUNCATED]
    
    Rd file 'power.group.cost.Rd':
     \usage lines wider than 90 characters:
     power.group.cost(initial, protein, n1, artifact, budget, s, assaycost2.function, assaycost3.function, recruit, optimize = FALSE)
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
     power.group.cost(initial,protein=protein,artifact=rep(1,5),n1=30,budget=500000,s=1000,assaycost2.function=assaycost2,assaycost3.functio ... [TRUNCATED]
    
    Rd file 'power.single.cost.Rd':
     \usage lines wider than 90 characters:
     power.single.cost(initial, protein, n1, artifact, budget, s, assaycost2.function, assaycost3.function, recruit, optimize = FALSE)
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
     power.single.cost(initial,protein=protein,artifact=rep(1,5),n1=30,budget=500000,s=1000,assaycost2.function=assaycost2,assaycost3.functi ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    optim.two.stage.appr: no visible global function definition for
     ‘mvrnorm’
    optim.two.stage.group: no visible global function definition for
     ‘mvrnorm’
    optim.two.stage.single: no visible global function definition for
     ‘mvrnorm’
    power.group.cost: no visible global function definition for ‘mvrnorm’
    power.single.cost: no visible global function definition for ‘mvrnorm’
    Undefined global functions or variables:
     mvrnorm
Flavor: r-devel-osx-x86_64-clang

Version: 2.0
Check: R code for possible problems
Result: NOTE
    optim.two.stage.appr: no visible global function definition for
     ‘mvrnorm’
    optim.two.stage.group: no visible global function definition for
     ‘mvrnorm’
    optim.two.stage.single: no visible global function definition for
     ‘mvrnorm’
    power.group.cost: no visible global function definition for ‘mvrnorm’
    power.single.cost: no visible global function definition for ‘mvrnorm’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64