CRAN Package Check Results for Package proteomicdesign

Last updated on 2014-04-24 09:49:07.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0 0.76 17.53 18.29 NOTE
r-devel-linux-x86_64-debian-gcc 2.0 0.79 17.48 18.27 NOTE
r-devel-linux-x86_64-fedora-clang 2.0 36.35 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0 34.57 NOTE
r-devel-osx-x86_64-clang 2.0 35.27 NOTE
r-devel-osx-x86_64-gcc 2.0 NOTE
r-devel-windows-ix86+x86_64 2.0 2.00 26.00 28.00 NOTE
r-patched-linux-x86_64 2.0 0.76 17.70 18.46 NOTE
r-patched-solaris-sparc 2.0 197.70 NOTE
r-patched-solaris-x86 2.0 45.00 NOTE
r-release-linux-ix86 2.0 2.00 32.00 34.00 NOTE
r-release-linux-x86_64 2.0 0.80 17.85 18.65 NOTE
r-release-osx-x86_64-mavericks 2.0 WARN
r-release-osx-x86_64-snowleopard 2.0 OK
r-release-windows-ix86+x86_64 2.0 2.00 25.00 27.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0 3.00 26.00 29.00 NOTE

Check Details

Version: 2.0
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘MASS’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: Rd line widths
Result: NOTE
    Rd file 'optim.two.stage.appr.Rd':
     \usage lines wider than 90 characters:
     optim.two.stage.appr(budget, protein, n1, artifact, iter.number, assaycost2.function, assaycost3.function, recruit = 100, a1.t.min = 0. ... [TRUNCATED]
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
     optim.two.stage.appr(budget=500000,protein=protein,n1=30,artifact=rep(1,5),iter.number=1,assaycost2.function=assaycost2,assaycost3.func ... [TRUNCATED]
    
    Rd file 'optim.two.stage.group.Rd':
     \usage lines wider than 90 characters:
     optim.two.stage.group(budget, protein, n1, artifact, iter.number, assaycost2.function, assaycost3.function, recruit = 100, s = 1000, a1 ... [TRUNCATED]
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
     optim.two.stage.group(budget=500000,protein=protein,n1=60,artifact=rep(1,5),iter.number=1,assaycost2.function=assaycost2,assaycost3.fun ... [TRUNCATED]
    
    Rd file 'optim.two.stage.single.Rd':
     \usage lines wider than 90 characters:
     optim.two.stage.single(budget, protein, n1, artifact, iter.number, assaycost2.function, assaycost3.function, recruit = 100, s = 1000, a ... [TRUNCATED]
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4))
     optim.two.stage.single(budget=500000,artifact=rep(1,5),protein=protein,n1=30,iter.number=1,assaycost2.function=assaycost2,assaycost3.fu ... [TRUNCATED]
    
    Rd file 'power.group.cost.Rd':
     \usage lines wider than 90 characters:
     power.group.cost(initial, protein, n1, artifact, budget, s, assaycost2.function, assaycost3.function, recruit, optimize = FALSE)
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
     power.group.cost(initial,protein=protein,artifact=rep(1,5),n1=30,budget=500000,s=1000,assaycost2.function=assaycost2,assaycost3.functio ... [TRUNCATED]
    
    Rd file 'power.single.cost.Rd':
     \usage lines wider than 90 characters:
     power.single.cost(initial, protein, n1, artifact, budget, s, assaycost2.function, assaycost3.function, recruit, optimize = FALSE)
     \examples lines wider than 100 characters:
     protein<-data.frame(proteinid=c(100,101,103,104,105),beta=c(2.4,2.6,0.5,2.6,0.7),sigma=c(0.6,0.7,0.3,0.7,0.4),group=c(1,1,1,2,2))
     power.single.cost(initial,protein=protein,artifact=rep(1,5),n1=30,budget=500000,s=1000,assaycost2.function=assaycost2,assaycost3.functi ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.0
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    988d679/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks