CRAN Package Check Results for Package qMRI

Last updated on 2021-12-07 19:49:54 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2 10.46 231.19 241.65 OK
r-devel-linux-x86_64-debian-gcc 1.2 6.86 163.02 169.88 OK
r-devel-linux-x86_64-fedora-clang 1.2 276.81 OK
r-devel-linux-x86_64-fedora-gcc 1.2 264.13 OK
r-devel-windows-x86_64-new-UL 1.2 23.00 272.00 295.00 OK
r-devel-windows-x86_64-new-TK 1.2 ERROR
r-devel-windows-x86_64-old 1.2 16.00 190.00 206.00 OK
r-patched-linux-x86_64 1.2 8.50 214.63 223.13 OK
r-release-linux-x86_64 1.2 8.81 214.02 222.83 OK
r-release-macos-arm64 1.2 OK
r-release-macos-x86_64 1.2 OK
r-release-windows-ix86+x86_64 1.2 15.00 355.00 370.00 OK
r-oldrel-macos-x86_64 1.2 OK
r-oldrel-windows-ix86+x86_64 1.2 24.00 360.00 384.00 OK

Check Details

Version: 1.2
Check: tests
Result: ERROR
     Running 'qMRI-test.R'
    Running the tests in 'tests/qMRI-test.R' failed.
    Complete output:
     > library(qMRI)
     Loading required package: awsMethods
    
     Use the function setCores() to change the number of CPU cores.
    
     > dataDir <- system.file("extdata",package="qMRI")
     > #
     > # set file names for T1w, MTw and PDw images
     > #
     > t1Names <- paste0("t1w_",1:8,".nii.gz")
     > mtNames <- paste0("mtw_",1:6,".nii.gz")
     > pdNames <- paste0("pdw_",1:8,".nii.gz")
     > t1Files <- file.path(dataDir, t1Names)
     > mtFiles <- file.path(dataDir, mtNames)
     > pdFiles <- file.path(dataDir, pdNames)
     > #
     > # file names of mask and B1 field map
     > #
     > B1File <- file.path(dataDir, "B1map.nii.gz")
     > maskFile <- file.path(dataDir, "mask.nii.gz")
     > #
     > # Acquisition parameters (TE, TR, Flip Angle) for T1w, MTw and PDw images
     > #
     > TE <- c(2.3, 4.6, 6.9, 9.2, 11.5, 13.8, 16.1, 18.4,
     + 2.3, 4.6, 6.9, 9.2, 11.5, 13.8,
     + 2.3, 4.6, 6.9, 9.2, 11.5, 13.8, 16.1, 18.4)
     > TR <- rep(25, 22)
     > FA <- c(rep(21, 8), rep(6, 6), rep(6, 8))
     > #
     > # read MPM example data
     > #
     > library(qMRI)
     > mpm <- readMPMData(t1Files, pdFiles, mtFiles,
     + maskFile, TR = TR, TE = TE,
     + FA = FA, verbose = FALSE)
     > #
     > # Estimate Parameters in the ESTATICS model
     > #
     > modelMPM <- estimateESTATICS(mpm, method = "NLR", verbose=FALSE)
     > #
     > # smooth maps of ESTATICS Parameters
     > #
     > setCores(2, reprt = FALSE)
     > modelMPMsp1 <- smoothESTATICS(modelMPM,
     + kstar = 16,
     + alpha = 0.004,
     + patchsize=1,
     + verbose = FALSE)
Flavor: r-devel-windows-x86_64-new-TK

Version: 1.2
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in 'qMRI-Example.Rnw'
    
    > options(digits = 3)
    
    > dataDir <- system.file("extdata", package = "qMRI")
    
    > t1Names <- paste0("t1w_", 1:8, ".nii.gz")
    
    > mtNames <- paste0("mtw_", 1:6, ".nii.gz")
    
    > pdNames <- paste0("pdw_", 1:8, ".nii.gz")
    
    > t1Files <- file.path(dataDir, t1Names)
    
    > mtFiles <- file.path(dataDir, mtNames)
    
    > pdFiles <- file.path(dataDir, pdNames)
    
    > B1File <- file.path(dataDir, "B1map.nii.gz")
    
    > maskFile <- file.path(dataDir, "mask.nii.gz")
    
    > TE <- c(2.3, 4.6, 6.9, 9.2, 11.5, 13.8, 16.1, 18.4,
    + 2.3, 4.6, 6.9, 9.2, 11.5, 13.8, 2.3, 4.6, 6.9, 9.2, 11.5,
    + 13.8, 16.1, 18.4)
    
    > TR <- rep(25, 22)
    
    > FA <- c(rep(21, 8), rep(6, 6), rep(6, 8))
    
    > library(qMRI)
    Loading required package: awsMethods
    
    Use the function setCores() to change the number of CPU cores.
    
    
    > mpm <- readMPMData(t1Files, pdFiles, mtFiles, maskFile,
    + TR = TR, TE = TE, FA = FA, verbose = FALSE)
    
    > modelMPM <- estimateESTATICS(mpm, method = "NLR",
    + verbose = FALSE)
    
    > setCores(2, reprt = FALSE)
    
    > modelMPMQLsp1 <- smoothESTATICS(modelMPM, mpmData = extract(mpm,
    + "ddata"), kstar = 16, alpha = 0.004, patchsize = 1, verbose = FALSE)
    
    ... incomplete output. Crash?
    
     'qMRI-Example.Rnw'... failed to complete the test
Flavor: r-devel-windows-x86_64-new-TK

Version: 1.2
Check: re-building of vignette outputs
Result: NOTE
    Error(s) in re-building vignettes:
    --- re-building 'qMRI-Example.Rnw' using Sweave
    Loading required package: awsMethods
    
    Use the function setCores() to change the number of CPU cores.
Flavor: r-devel-windows-x86_64-new-TK