CRAN Package Check Results for Package qgraph

Last updated on 2015-08-31 23:49:44.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.1 12.62 77.37 89.99 NOTE
r-devel-linux-x86_64-debian-gcc 1.3.1 11.20 77.20 88.40 NOTE
r-devel-linux-x86_64-fedora-clang 1.3.1 179.74 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3.1 170.50 NOTE
r-devel-osx-x86_64-clang 1.3.1 158.68 OK
r-devel-windows-ix86+x86_64 1.3.1 43.00 156.00 199.00 NOTE
r-patched-linux-x86_64 1.3.1 11.92 79.61 91.54 OK
r-patched-solaris-sparc 1.3.1 1223.10 ERROR
r-patched-solaris-x86 1.3.1 266.50 OK
r-release-linux-x86_64 1.3.1 11.57 84.64 96.21 OK
r-release-osx-x86_64-mavericks 1.3.1 OK
r-release-windows-ix86+x86_64 1.3.1 39.00 169.00 208.00 NOTE
r-oldrel-windows-ix86+x86_64 1.3.1 72.00 285.00 357.00 NOTE

Check Details

Version: 1.3.1
Check: R code for possible problems
Result: NOTE
    ArrowMidPoint: no visible global function definition for ‘par’
    ArrowRadIn: no visible global function definition for ‘par’
    Cent2Edge: no visible global function definition for ‘par’
    Cent2Edge: no visible global function definition for ‘dev.cur’
    DrawArrow: no visible global function definition for ‘par’
    EBICglasso: no visible global function definition for ‘cov2cor’
    Fade: no visible global function definition for ‘par’
    Fade: no visible global function definition for ‘col2rgb’
    Fade: no visible global function definition for ‘rgb’
    Jaccard: no visible global function definition for ‘is’
    PerpMid: no visible global function definition for ‘par’
    SelfLoop: no visible global function definition for ‘xspline’
    VARglm: no visible binding for global variable ‘BIC’
    VARglm: no visible binding for global variable ‘sd’
    VARglm: no visible global function definition for ‘glm’
    VARglm: no visible global function definition for ‘is’
    VARglm: no visible global function definition for ‘coef’
    addTitle: no visible global function definition for ‘text’
    addTitle: no visible global function definition for ‘par’
    addTrans: no visible global function definition for ‘col2rgb’
    centralityTable: no visible global function definition for ‘is’
    clusteringTable: no visible global function definition for ‘is’
    colstripalpha: no visible global function definition for ‘col2rgb’
    colstripalpha : <anonymous>: no visible binding for global variable
     ‘rgb’
    cor_auto: no visible binding for global variable ‘is’
    drawNode: no visible global function definition for ‘rect’
    findGraph: no visible global function definition for ‘cov2cor’
    findGraph: no visible global function definition for ‘txtProgressBar’
    findGraph: no visible global function definition for
     ‘setTxtProgressBar’
    in2usrX: no visible global function definition for ‘par’
    in2usrY: no visible global function definition for ‘par’
    isColor : <anonymous>: no visible global function definition for
     ‘col2rgb’
    mixCols: no visible global function definition for ‘col2rgb’
    mixCols: no visible binding for global variable ‘weighted.mean’
    mixCols: no visible global function definition for ‘rgb’
    plot.qgraph: no visible global function definition for ‘col2rgb’
    plot.qgraph: no visible global function definition for ‘dev.list’
    plot.qgraph: no visible global function definition for ‘dev.cur’
    plot.qgraph: no visible global function definition for ‘dev.new’
    plot.qgraph: no visible global function definition for ‘postscript’
    plot.qgraph: no visible global function definition for ‘pdf’
    plot.qgraph: no visible global function definition for ‘tiff’
    plot.qgraph: no visible global function definition for ‘png’
    plot.qgraph: no visible global function definition for ‘jpeg’
    plot.qgraph: no visible global function definition for ‘par’
    plot.qgraph: no visible global function definition for ‘rgb’
    plot.qgraph: no visible global function definition for ‘xspline’
    plot.qgraph: no visible global function definition for ‘strwidth’
    plot.qgraph: no visible global function definition for ‘strheight’
    plot.qgraph: no visible global function definition for ‘text’
    plot.qgraph: no visible global function definition for ‘rect’
    plot.qgraph : <anonymous>: no visible global function definition for
     ‘strwidth’
    plot.qgraph: no visible binding for global variable ‘strwidth’
    plot.qgraph : <anonymous>: no visible global function definition for
     ‘strheight’
    plot.qgraph: no visible binding for global variable ‘strheight’
    plot.qgraph: no visible global function definition for ‘cov’
    plot.qgraph: no visible global function definition for ‘dev.off’
    qgraph: no visible global function definition for ‘is’
    qgraph: no visible global function definition for ‘qt’
    qgraph: no visible global function definition for ‘dev.list’
    qgraph: no visible global function definition for ‘dev.cur’
    qgraph: no visible global function definition for ‘par’
    qgraph: no visible global function definition for ‘col2rgb’
    qgraph: no visible global function definition for ‘rgb’
    qgraph: no visible global function definition for ‘cov2cor’
    qgraph: no visible global function definition for ‘quantile’
    qgraph: no visible global function definition for ‘ave’
    qgraph: no visible global function definition for ‘rainbow’
    qgraph : <anonymous>: no visible global function definition for ‘rgb’
    qgraph.animate: no visible global function definition for
     ‘txtProgressBar’
    qgraph.animate: no visible global function definition for ‘rnorm’
    qgraph.animate: no visible global function definition for ‘title’
    qgraph.animate: no visible global function definition for
     ‘setTxtProgressBar’
    qgraph.animate: no visible global function definition for ‘predict’
    qgraph.animate: no visible global function definition for ‘loess’
    qgraph.cfa: no visible global function definition for ‘combn’
    qgraph.efa: no visible global function definition for ‘cor’
    qgraph.lavaan: no visible global function definition for ‘pdf’
    qgraph.lavaan: no visible global function definition for ‘title’
    qgraph.lavaan: no visible global function definition for ‘cov2cor’
    qgraph.lavaan: no visible global function definition for ‘par’
    qgraph.lavaan: no visible global function definition for ‘dev.off’
    qgraph.layout.fruchtermanreingold: no visible global function
     definition for ‘rnorm’
    qgraph.loadings: no visible global function definition for ‘dev.list’
    qgraph.loadings: no visible global function definition for ‘dev.cur’
    qgraph.loadings: no visible global function definition for ‘dev.size’
    qgraph.loadings: no visible global function definition for ‘dev.new’
    qgraph.loadings: no visible global function definition for ‘postscript’
    qgraph.loadings: no visible global function definition for ‘pdf’
    qgraph.loadings: no visible global function definition for ‘tiff’
    qgraph.loadings: no visible global function definition for ‘png’
    qgraph.loadings: no visible global function definition for ‘jpeg’
    qgraph.loadings: no visible global function definition for ‘rainbow’
    qgraph.loadings: no visible global function definition for ‘dev.off’
    qgraph.panel: no visible global function definition for ‘dev.list’
    qgraph.panel: no visible global function definition for ‘dev.cur’
    qgraph.panel: no visible global function definition for ‘dev.size’
    qgraph.panel: no visible global function definition for ‘dev.new’
    qgraph.panel: no visible global function definition for ‘postscript’
    qgraph.panel: no visible global function definition for ‘pdf’
    qgraph.panel: no visible global function definition for ‘tiff’
    qgraph.panel: no visible global function definition for ‘png’
    qgraph.panel: no visible global function definition for ‘jpeg’
    qgraph.panel: no visible global function definition for ‘par’
    qgraph.panel: no visible global function definition for ‘dev.off’
    qgraph.sem: no visible global function definition for ‘pdf’
    qgraph.sem: no visible global function definition for ‘par’
    qgraph.sem: no visible global function definition for ‘title’
    qgraph.sem: no visible global function definition for ‘text’
    qgraph.sem: no visible global function definition for ‘pchisq’
    qgraph.sem: no visible global function definition for ‘cov2cor’
    qgraph.sem: no visible global function definition for ‘dev.off’
    qgraph.semModel: no visible global function definition for ‘title’
    qgraph.svg: no visible global function definition for ‘menu’
    qgraph.svg: no visible global function definition for ‘par’
    qgraph.svg: no visible global function definition for ‘rainbow’
    qgraph.svg: no visible global function definition for ‘text’
    qgraph.svg: no visible global function definition for ‘dev.off’
    qgraphD3: no visible global function definition for ‘is’
    qgraphD3: no visible global function definition for ‘browseURL’
    scale2: no visible global function definition for ‘sd’
    smallworldness: no visible global function definition for ‘quantile’
    usr2inX: no visible global function definition for ‘par’
    usr2inX2: no visible global function definition for ‘par’
    usr2inY: no visible global function definition for ‘par’
    usr2inY2: no visible global function definition for ‘par’
    wi2net: no visible global function definition for ‘cov2cor’
    xkcd_jitter: no visible global function definition for ‘par’
    xkcd_jitter: no visible global function definition for ‘rnorm’
    Undefined global functions or variables:
     BIC ave browseURL coef col2rgb combn cor cov cov2cor dev.cur dev.list
     dev.new dev.off dev.size glm is jpeg loess menu par pchisq pdf png
     postscript predict qt quantile rainbow rect rgb rnorm sd
     setTxtProgressBar strheight strwidth text tiff title txtProgressBar
     weighted.mean xspline
    Consider adding
     importFrom("grDevices", "col2rgb", "dev.cur", "dev.list", "dev.new",
     "dev.off", "dev.size", "jpeg", "pdf", "png", "postscript",
     "rainbow", "rgb", "tiff")
     importFrom("graphics", "par", "rect", "strheight", "strwidth", "text",
     "title", "xspline")
     importFrom("methods", "is")
     importFrom("stats", "BIC", "ave", "coef", "cor", "cov", "cov2cor",
     "glm", "loess", "pchisq", "predict", "qt", "quantile",
     "rnorm", "sd", "weighted.mean")
     importFrom("utils", "browseURL", "combn", "menu", "setTxtProgressBar",
     "txtProgressBar")
    to your NAMESPACE (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.3.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'RSVGTipsDevice'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3.1
Check: examples
Result: ERROR
    Running examples in ‘qgraph-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: centrality_auto
    > ### Title: Automatic centrality statistics of graphs
    > ### Aliases: centrality_auto
    > ### Keywords: graphs centrality
    >
    > ### ** Examples
    >
    > set.seed(1)
    > adj <- matrix(sample(0:1,10^2,TRUE,prob=c(0.8,0.2)),nrow=10,ncol=10)
    > Q <- qgraph(adj)
    > centrality_auto(Q)
    
     *** caught segfault ***
    address 86c00000, cause 'memory not mapped'
    
    Traceback:
     1: base::.Call(.NAME, ...)
     2: .Call("R_igraph_graph_adjacency", adjmatrix, as.numeric(mode), PACKAGE = "igraph")
     3: graph.adjacency.dense(adjmatrix, mode = mode, weighted = weighted, diag = diag)
     4: graph.adjacency(adjmatrix = abs(1/x), mode = ifelse(directed.gr, "directed", "undirected"), weighted = (if (weighted.gr) TRUE), diag = FALSE)
     5: centrality_auto(Q)
    aborting ...
Flavor: r-patched-solaris-sparc