CRAN Package Check Results for Package qtlhot

Last updated on 2015-06-30 06:47:11.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.0 1.40 43.89 45.29 NOTE
r-devel-linux-x86_64-debian-gcc 0.9.0 1.33 43.64 44.97 NOTE
r-devel-linux-x86_64-fedora-clang 0.9.0 92.35 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9.0 85.85 NOTE
r-devel-osx-x86_64-clang 0.9.0 81.72 NOTE
r-devel-windows-ix86+x86_64 0.9.0 14.00 89.00 103.00 NOTE
r-patched-linux-x86_64 0.9.0 1.47 43.16 44.62 NOTE
r-patched-solaris-sparc 0.9.0 535.90 NOTE
r-patched-solaris-x86 0.9.0 110.80 NOTE
r-release-linux-x86_64 0.9.0 1.44 43.81 45.24 NOTE
r-release-osx-x86_64-mavericks 0.9.0 NOTE
r-release-windows-ix86+x86_64 0.9.0 11.00 115.00 126.00 NOTE
r-oldrel-windows-ix86+x86_64 0.9.0 14.00 131.00 145.00 OK

Check Details

Version: 0.9.0
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 0.9.0
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     parallel.qtlhot
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.9.0
Check: R code for possible problems
Result: NOTE
    CMSTtests : CreateDesignMatrix: no visible global function definition
     for ‘model.matrix’
    CMSTtests : CreateDesignMatrix: no visible global function definition
     for ‘as.formula’
    CMSTtests : ParametricIUCMST: no visible global function definition for
     ‘pnorm’
    CMSTtests : NonparametricIUCMST: no visible global function definition
     for ‘pbinom’
    CMSTtests : GetLogLik: no visible global function definition for
     ‘dnorm’
    CMSTtests: no visible global function definition for ‘cov’
    CMSTtests: no visible global function definition for ‘cov2cor’
    CitTests: no visible global function definition for ‘lm’
    CitTests: no visible global function definition for ‘anova’
    CitTests: no visible global function definition for ‘resid’
    CitTests: no visible global function definition for ‘runif’
    CitTests: no visible global function definition for ‘pf’
    CitTests: no visible global function definition for ‘qnorm’
    CitTests: no visible global function definition for ‘pnorm’
    CitTests: no visible global function definition for ‘sd’
    DropMissing: no visible global function definition for ‘na.omit’
    FDRplot: no visible global function definition for ‘par’
    FDRplot: no visible global function definition for ‘plot’
    FDRplot: no visible global function definition for ‘abline’
    FDRplot: no visible global function definition for ‘points’
    GetCommonQtls : CreateCovMatrix: no visible global function definition
     for ‘formula’
    GetCommonQtls : CreateCovMatrix: no visible global function definition
     for ‘model.matrix’
    MyMultipleTestingSim: no visible global function definition for ‘runif’
    MyMultipleTestingSim2: no visible global function definition for
     ‘runif’
    SimCross1: no visible global function definition for ‘rnorm’
    SimCross2: no visible global function definition for ‘rnorm’
    SimCross3: no visible global function definition for ‘rnorm’
    SimCross4: no visible global function definition for ‘rnorm’
    SimCross5: no visible global function definition for ‘rnorm’
    SimCross6: no visible global function definition for ‘rnorm’
    SimCrossCausal: no visible global function definition for ‘rnorm’
    SimCrossIndep: no visible global function definition for ‘rnorm’
    add.rug: no visible global function definition for ‘par’
    add.rug: no visible global function definition for ‘rug’
    add.rug: no visible global function definition for ‘abline’
    add.rug: no visible global function definition for ‘axis’
    add.rug: no visible global function definition for ‘mtext’
    add.rug: no visible global function definition for ‘title’
    big.phase2: no visible binding for global variable ‘window’
    get.chr.pos: no visible global function definition for ‘rnorm’
    include.hotspots : update.pheno: no visible global function definition
     for ‘rnorm’
    include.hotspots : update.pheno: no visible global function definition
     for ‘runif’
    make.maxlod : tmpfn2: no visible global function definition for
     ‘median’
    myapprox: no visible global function definition for ‘approx’
    normal.trans: no visible global function definition for ‘qnorm’
    p.adjust.np: no visible global function definition for ‘p.adjust’
    parallel.error: no visible global function definition for ‘write.table’
    parallel.message: no visible global function definition for
     ‘write.table’
    plot.bic.aic: no visible global function definition for ‘par’
    plot.bic.aic: no visible global function definition for ‘plot’
    plot.bic.aic: no visible global function definition for ‘abline’
    plot.bic.aic: no visible global function definition for ‘points’
    plot.cit: no visible global function definition for ‘par’
    plot.cit: no visible global function definition for ‘plot’
    plot.cit: no visible global function definition for ‘abline’
    plot.cit: no visible global function definition for ‘points’
    plot.highlod: no visible global function definition for ‘plot’
    plot.hotperm : tmp.plot: no visible global function definition for
     ‘plot’
    plot.hotperm : tmp.plot: no visible global function definition for
     ‘mtext’
    plot.hotperm : tmp.plot: no visible global function definition for
     ‘abline’
    plot.hotperm : tmp.plot: no visible global function definition for
     ‘lines’
    plot.hotperm : tmp.plot: no visible global function definition for
     ‘text’
    plot.hotperm : tmp.plot: no visible global function definition for
     ‘par’
    plot.hotperm: no visible global function definition for ‘par’
    plot.hotperm: no visible global function definition for ‘plot’
    plot.hotperm: no visible global function definition for ‘abline’
    plot.hotperm: no visible global function definition for ‘mtext’
    plot.hotperm: no visible global function definition for ‘lines’
    plot.hotperm: no visible global function definition for ‘text’
    plot.hotperm: no visible global function definition for ‘title’
    plot.hotsize: no visible global function definition for ‘plot’
    plot.hotsize: no visible global function definition for ‘abline’
    plot.hotsize: no visible global function definition for ‘axis’
    plot.hotsize: no visible global function definition for ‘mtext’
    plot.non.par.cmst: no visible global function definition for ‘par’
    plot.non.par.cmst: no visible global function definition for ‘plot’
    plot.non.par.cmst: no visible global function definition for ‘abline’
    plot.non.par.cmst: no visible global function definition for ‘points’
    plot.par.cmst: no visible global function definition for ‘par’
    plot.par.cmst: no visible global function definition for ‘plot’
    plot.par.cmst: no visible global function definition for ‘abline’
    plot.par.cmst: no visible global function definition for ‘points’
    plot.par.cmst.joint: no visible global function definition for ‘par’
    plot.par.cmst.joint: no visible global function definition for ‘plot’
    plot.par.cmst.joint: no visible global function definition for ‘abline’
    plot.par.cmst.joint: no visible global function definition for ‘points’
    qtlhot.phase1: no visible global function definition for ‘write.table’
    sexbatch.covar: no visible global function definition for ‘formula’
    sexbatch.covar: no visible global function definition for
     ‘model.matrix’
    sim.null.pheno.data: no visible global function definition for ‘rnorm’
    sliding.bar.plot : create.rug: no visible global function definition
     for ‘median’
    sliding.bar.plot: no visible global function definition for ‘par’
    sliding.bar.plot: no visible global function definition for ‘plot’
    sliding.bar.plot: no visible global function definition for ‘rug’
    sliding.bar.plot: no visible global function definition for ‘axis’
    sliding.bar.plot: no visible global function definition for ‘mtext’
    sliding.bar.plot: no visible global function definition for ‘segments’
    slidingbar.plot: no visible global function definition for ‘image’
    slidingbar.plot: no visible global function definition for ‘mtext’
    slidingbar.plot: no visible global function definition for ‘abline’
    slidingbar.plot: no visible global function definition for ‘par’
    slidingbar.plot: no visible global function definition for ‘axis’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64