Last updated on 2017-09-24 11:48:32.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.6 | 7.32 | 103.00 | 110.32 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.3.6 | 6.75 | 99.26 | 106.01 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.3.6 | 226.71 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.6 | 224.31 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.3.6 | 17.00 | 149.00 | 166.00 | NOTE | |
| r-patched-linux-x86_64 | 1.3.6 | 7.91 | 101.97 | 109.88 | NOTE | |
| r-patched-solaris-x86 | 1.3.6 | 292.60 | NOTE | |||
| r-release-linux-x86_64 | 1.3.6 | 7.37 | 101.96 | 109.33 | NOTE | |
| r-release-windows-ix86+x86_64 | 1.3.6 | 18.00 | 156.00 | 174.00 | NOTE | |
| r-release-osx-x86_64 | 1.3.6 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 1.3.6 | 17.00 | 137.00 | 154.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.3.6 | NOTE |
Version: 1.3.6
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.3.6
Check: dependencies in R code
Result: NOTE
Packages in Depends field not imported from:
‘graph’ ‘igraph’ ‘pcalg’ ‘qtl’ ‘sem’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.3.6
Check: S3 generic/method consistency
Result: NOTE
Found the following apparent S3 methods exported but not registered:
c.qtlnet subset.qtlnet
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.3.6
Check: R code for possible problems
Result: NOTE
adjust.pheno: no visible global function definition for ‘find.pheno’
approximate.UDG : pvalue: no visible global function definition for
‘pt’
approximate.UDG: no visible global function definition for ‘cor’
approximate.UDG: no visible global function definition for ‘combn’
bic.qtlnet: no visible global function definition for ‘calc.genoprob’
cov.formula: no visible global function definition for ‘as.formula’
create.cov.matrix: no visible global function definition for ‘formula’
create.cov.matrix: no visible global function definition for
‘model.matrix’
dist.qtlnet: no visible global function definition for ‘plot’
dist.qtlnet: no visible global function definition for ‘abline’
edgematch.qtlnet: no visible global function definition for ‘plot’
edgematch.qtlnet: no visible global function definition for ‘abline’
edgematch.qtlnet: no visible global function definition for ‘points’
est.qtlnet: no visible global function definition for ‘calc.genoprob’
est.qtlnet: no visible global function definition for ‘makeqtl’
est.qtlnet: no visible global function definition for ‘formula’
est.qtlnet: no visible global function definition for ‘fitqtl’
est.qtlnet: no visible global function definition for ‘coef’
est.qtlnet: no visible global function definition for ‘lm’
generate.data.graph.a : gibbs.graph.a: no visible global function
definition for ‘rnorm’
generate.data.graph.b : gibbs.graph.b: no visible global function
definition for ‘rnorm’
generate.data.graph.c : gibbs.graph.c: no visible global function
definition for ‘rnorm’
generate.qtl.markers: no visible global function definition for
‘makeqtl’
generate.qtl.markers: no visible global function definition for
‘find.marker’
geno.effect: no visible global function definition for ‘rnorm’
get.graph.edges: no visible global function definition for
‘list.edge.attributes’
get.graph.edges: no visible global function definition for
‘get.edgelist’
get.graph.edges: no visible global function definition for
‘get.edge.attribute’
get.graph.vertices: no visible global function definition for
‘list.vertex.attributes’
get.graph.vertices: no visible global function definition for
‘get.vertex.attribute’
get.model.average: no visible binding for global variable
‘weighted.mean’
igraph.qdg: no visible global function definition for ‘pchisq’
igraph.qtlnet: no visible global function definition for
‘igraph.options’
igraph.qtlnet: no visible global function definition for
‘graph.data.frame’
loci.qtlnet: no visible global function definition for ‘calc.genoprob’
lod.score: no visible global function definition for ‘compareVersion’
lod.score: no visible global function definition for ‘qtlversion’
lod.score : myfitqtl: no visible global function definition for
‘fitqtl’
lod.score: no visible global function definition for ‘find.pheno’
log.likelihood.s: no visible global function definition for
‘find.pheno’
log.likelihood.s: no visible global function definition for ‘lm’
log.likelihood.s: no visible global function definition for ‘logLik’
log.likelihood.s: no visible global function definition for ‘AIC’
match.parents: no visible global function definition for ‘nind’
mcmc.qtlnet: no visible global function definition for ‘calc.genoprob’
mcmc.qtlnet: no visible global function definition for ‘plot’
mcmc.qtlnet: no visible global function definition for ‘points’
mcmc.qtlnet: no visible global function definition for ‘runif’
mds.qtlnet: no visible global function definition for ‘dist’
mds.qtlnet: no visible global function definition for ‘cmdscale’
mds.qtlnet: no visible global function definition for ‘plot’
mds.qtlnet: no visible global function definition for ‘points’
newfun: no visible global function definition for ‘plot’
newfun: no visible global function definition for ‘points’
newfun: no visible global function definition for ‘abline’
parallel.error: no visible global function definition for ‘write.table’
parallel.message: no visible global function definition for
‘write.table’
parents.qtlnet: no visible global function definition for ‘combn’
plot.qtlnet: no visible global function definition for ‘tkplot’
plotbic.qtlnet : plotfn: no visible global function definition for
‘lines’
plotbic.qtlnet : splotfn: no visible global function definition for
‘lines’
plotbic.qtlnet : splotfn: no visible global function definition for
‘lowess’
plotbic.qtlnet: no visible global function definition for ‘plot’
plotbic.qtlnet: no visible global function definition for ‘title’
propose.new.node.edge: no visible global function definition for
‘runif’
pull.loci: no visible global function definition for ‘create.map’
qdg: no visible global function definition for ‘cor’
qdg: no visible global function definition for ‘skeleton’
qdg: no visible binding for global variable ‘gaussCItest’
qdg: no visible global function definition for ‘argmax.geno’
qdg.sem : score.sem.models: no visible global function definition for
‘nind’
qdg.sem : score.sem.models: no visible global function definition for
‘lm’
qdg.sem : score.sem.models: no visible global function definition for
‘as.formula’
qdg.sem : score.sem.models: no visible global function definition for
‘cov’
qdg.sem : score.sem.models: no visible global function definition for
‘sem’
qtlnet.phase1: no visible global function definition for
‘calc.genoprob’
qtlnet.phase1: no visible global function definition for ‘write.table’
s.formula: no visible global function definition for ‘as.formula’
s.formula: no visible global function definition for ‘model.matrix’
scan.genome: no visible global function definition for ‘makeqtl’
scan.genome: no visible global function definition for ‘lm’
scan.genome: no visible global function definition for ‘AIC’
scan.genome: no visible global function definition for ‘update’
scanone.summary: no visible global function definition for ‘scanone’
summary.qtlnet: no visible global function definition for
‘weighted.mean’
write.qtlnet: no visible global function definition for ‘write.table’
Undefined global functions or variables:
AIC abline argmax.geno as.formula calc.genoprob cmdscale coef combn
compareVersion cor cov create.map dist find.marker find.pheno fitqtl
formula gaussCItest get.edge.attribute get.edgelist
get.vertex.attribute graph.data.frame igraph.options lines
list.edge.attributes list.vertex.attributes lm logLik lowess makeqtl
model.matrix nind pchisq plot points pt qtlversion rnorm runif
scanone sem skeleton title tkplot update weighted.mean write.table
Consider adding
importFrom("graphics", "abline", "lines", "plot", "points", "title")
importFrom("stats", "AIC", "as.formula", "cmdscale", "coef", "cor",
"cov", "dist", "formula", "lm", "logLik", "lowess",
"model.matrix", "pchisq", "pt", "rnorm", "runif", "update",
"weighted.mean")
importFrom("utils", "combn", "compareVersion", "write.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.3.6
Check: package dependencies
Result: ERROR
Packages required but not available: ‘graph’ ‘pcalg’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-release-osx-x86_64