Last updated on 2014-03-09 13:46:50.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.5 | 4.69 | 43.07 | 47.76 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.3.5 | 4.71 | 45.65 | 50.36 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3.5 | 97.51 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.5 | 49.16 | ERROR | |||
| r-devel-macosx-x86_64-clang | 1.3.5 | 49.43 | ERROR | |||
| r-devel-macosx-x86_64-gcc | 1.3.5 | ERROR | ||||
| r-devel-windows-ix86+x86_64 | 1.3.5 | 11.00 | 57.00 | 68.00 | ERROR | |
| r-patched-linux-x86_64 | 1.3.5 | 4.86 | 42.26 | 47.12 | ERROR | |
| r-patched-solaris-sparc | 1.3.5 | 519.80 | ERROR | |||
| r-patched-solaris-x86 | 1.3.5 | 120.00 | ERROR | |||
| r-release-linux-ix86 | 1.3.5 | 9.00 | 133.00 | 142.00 | NOTE | |
| r-release-linux-x86_64 | 1.3.5 | 4.43 | 87.79 | 92.22 | NOTE | |
| r-release-macosx-x86_64 | 1.3.5 | OK | ||||
| r-release-windows-ix86+x86_64 | 1.3.5 | 11.00 | 86.00 | 97.00 | ERROR | |
| r-oldrel-windows-ix86+x86_64 | 1.3.5 | 12.00 | 149.00 | 161.00 | WARN |
Memtest notes: valgrind
Version: 1.3.5
Check: dependencies in R code
Result: NOTE
Packages in Depends field not imported from:
‘graph’ ‘igraph’ ‘pcalg’ ‘qtl’ ‘sem’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64
Version: 1.3.5
Check: examples
Result: ERROR
Running examples in ‘qtlnet-Ex.R’ failed
The error most likely occurred in:
> ### Name: cyclica
> ### Title: Cyclic graph (a) example
> ### Aliases: cyclica.data cyclica.qtl cyclica
> ### Keywords: datagen
>
> ### ** Examples
>
> ## Not run:
> ##D bp <- matrix(0, 6, 6)
> ##D bp[2,1] <- bp[4,2] <- bp[4,3] <- bp[5,4] <- bp[2,5] <- bp[6,5] <- 0.5
> ##D stdev <- rep(0.025, 6)
> ##D
> ##D ## Use R/qtl routines to simulate.
> ##D set.seed(3456789)
> ##D mymap <- sim.map(len = rep(100,20), n.mar = 10, eq.spacing = FALSE,
> ##D include.x = FALSE)
> ##D mycross <- sim.cross(map = mymap, n.ind = 200, type = "f2")
> ##D mycross <- sim.geno(mycross, n.draws = 1)
> ##D
> ##D cyclica.qtl <- generate.qtl.markers(cross = mycross, n.phe = 6)
> ##D mygeno <- pull.geno(mycross)[, unlist(cyclica.qtl$markers)]
> ##D
> ##D cyclica.data <- generate.qtl.pheno("cyclica", cross = mycross, burnin = 2000,
> ##D bq = c(0.2,0.3,0.4), bp = bp, stdev = stdev, geno = mygeno)
> ##D save(cyclica.qtl, cyclica.data, file = "cyclica.RData", compress = TRUE)
> ## End(Not run)
>
> data(cyclica)
> out <- qdg(cross=cyclica.data,
+ phenotype.names=paste("y",1:6,sep=""),
+ marker.names=cyclica.qtl$markers,
+ QTL=cyclica.qtl$allqtl,
+ alpha=0.005,
+ n.qdg.random.starts=10,
+ skel.method="pcskel")
Error: is.character(labels) is not TRUE
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-windows-ix86+x86_64
Version: 1.3.5
Check: package dependencies
Result: ERROR
Packages required but not available: ‘graph’ ‘pcalg’
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-devel-macosx-x86_64-gcc