CRAN Package Check Results for Package qtlnet

Last updated on 2015-03-01 12:47:45.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.6 3.43 68.96 72.39 NOTE
r-devel-linux-x86_64-debian-gcc 1.3.6 3.44 66.04 69.48 NOTE
r-devel-linux-x86_64-fedora-clang 1.3.6 144.44 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3.6 137.32 NOTE
r-devel-osx-x86_64-clang 1.3.6 124.21 NOTE
r-devel-windows-ix86+x86_64 1.3.6 14.00 98.00 112.00 NOTE
r-patched-linux-x86_64 1.3.6 4.91 84.00 88.91 NOTE
r-patched-solaris-sparc 1.3.6 937.00 NOTE
r-patched-solaris-x86 1.3.6 218.80 NOTE
r-release-linux-ix86 1.3.6 5.61 97.22 102.82 NOTE
r-release-linux-x86_64 1.3.6 4.90 82.61 87.52 NOTE
r-release-osx-x86_64-mavericks 1.3.6 NOTE
r-release-osx-x86_64-snowleopard 1.3.6 NOTE
r-release-windows-ix86+x86_64 1.3.6 16.00 124.00 140.00 NOTE
r-oldrel-windows-ix86+x86_64 1.3.6 15.00 119.00 134.00 NOTE

Check Details

Version: 1.3.6
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.3.6
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘graph’ ‘igraph’ ‘pcalg’ ‘qtl’ ‘sem’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86

Version: 1.3.6
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     c.qtlnet subset.qtlnet
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.3.6
Check: R code for possible problems
Result: NOTE
    adjust.pheno: no visible global function definition for ‘find.pheno’
    bic.qtlnet: no visible global function definition for ‘calc.genoprob’
    est.qtlnet: no visible global function definition for ‘calc.genoprob’
    est.qtlnet: no visible global function definition for ‘makeqtl’
    est.qtlnet: no visible global function definition for ‘fitqtl’
    generate.qtl.markers: no visible global function definition for
     ‘makeqtl’
    generate.qtl.markers: no visible global function definition for
     ‘find.marker’
    get.graph.edges: no visible global function definition for
     ‘list.edge.attributes’
    get.graph.edges: no visible global function definition for
     ‘get.edgelist’
    get.graph.edges: no visible global function definition for
     ‘get.edge.attribute’
    get.graph.vertices: no visible global function definition for
     ‘list.vertex.attributes’
    get.graph.vertices: no visible global function definition for
     ‘get.vertex.attribute’
    igraph.qtlnet: no visible global function definition for
     ‘igraph.options’
    igraph.qtlnet: no visible global function definition for
     ‘graph.data.frame’
    loci.qtlnet: no visible global function definition for ‘calc.genoprob’
    lod.score: no visible global function definition for ‘qtlversion’
    lod.score : myfitqtl: no visible global function definition for
     ‘fitqtl’
    lod.score: no visible global function definition for ‘find.pheno’
    log.likelihood.s: no visible global function definition for
     ‘find.pheno’
    match.parents: no visible global function definition for ‘nind’
    mcmc.qtlnet: no visible global function definition for ‘calc.genoprob’
    plot.qtlnet: no visible global function definition for ‘tkplot’
    pull.loci: no visible global function definition for ‘create.map’
    qdg: no visible global function definition for ‘skeleton’
    qdg: no visible binding for global variable ‘gaussCItest’
    qdg: no visible global function definition for ‘argmax.geno’
    qdg.sem : score.sem.models: no visible global function definition for
     ‘nind’
    qdg.sem : score.sem.models: no visible global function definition for
     ‘sem’
    qtlnet.phase1: no visible global function definition for
     ‘calc.genoprob’
    scan.genome: no visible global function definition for ‘makeqtl’
    scanone.summary: no visible global function definition for ‘scanone’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.3.6
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘graph’ ‘igraph’ ‘pcalg’ ‘qtl’ ‘sem’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-patched-solaris-sparc, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64