CRAN Package Check Results for Package quantchem

Last updated on 2018-04-27 02:55:08 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.13 3.71 23.21 26.92 ERROR
r-devel-linux-x86_64-debian-gcc 0.13 2.55 19.52 22.07 ERROR
r-devel-linux-x86_64-fedora-clang 0.13 42.99 NOTE
r-devel-linux-x86_64-fedora-gcc 0.13 40.65 NOTE
r-devel-windows-ix86+x86_64 0.13 5.00 45.00 50.00 NOTE
r-patched-linux-x86_64 0.13 2.83 24.60 27.43 ERROR
r-patched-solaris-x86 0.13 58.50 NOTE
r-release-linux-x86_64 0.13 2.74 24.58 27.32 ERROR
r-release-windows-ix86+x86_64 0.13 5.00 45.00 50.00 NOTE
r-release-osx-x86_64 0.13 NOTE
r-oldrel-windows-ix86+x86_64 0.13 3.00 61.00 64.00 NOTE
r-oldrel-osx-x86_64 0.13 NOTE

Check Details

Version: 0.13
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     AIC.cal anova.lmcal anova.nlscal confint.cal plot.lmcal plot.nlscal
     predict.lmcal predict.nlscal print.lmcal print.nlscal residuals.cal
     summary.lmcal summary.nlscal
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.13
Check: R code for possible problems
Result: NOTE
    AIC.cal: no visible global function definition for ‘AIC’
    anova.lmcal: no visible global function definition for ‘anova’
    anova.nlscal: no visible global function definition for ‘anova’
    confint.cal: no visible global function definition for ‘confint’
    confint.cal: no visible global function definition for ‘pnorm’
    dstat: no visible global function definition for ‘median’
    dstat : means: no visible global function definition for ‘t.test’
    dstat : medians: no visible global function definition for
     ‘wilcox.test’
    dstat : medians: no visible global function definition for ‘median’
    dstat : vars: no visible global function definition for ‘var’
    dstat : vars: no visible global function definition for ‘sd’
    dstat : rsds: no visible global function definition for ‘var’
    dstat : rsds: no visible global function definition for ‘qchisq’
    dstat : ranges: no visible global function definition for
     ‘shapiro.test’
    dstat : ranges: no visible global function definition for ‘IQR’
    dstat : ranges: no visible global function definition for ‘mad’
    dstat: no visible global function definition for ‘var.test’
    dstat: no visible global function definition for ‘t.test’
    dstat: no visible global function definition for ‘ansari.test’
    dstat: no visible global function definition for ‘wilcox.test’
    dstat: no visible global function definition for ‘anova’
    dstat: no visible global function definition for ‘aov’
    dstat: no visible global function definition for ‘kruskal.test’
    dstat: no visible global function definition for ‘bartlett.test’
    dstat: no visible global function definition for ‘fligner.test’
    dstat: no visible global function definition for ‘printCoefmat’
    lmcal : weigh: no visible global function definition for ‘lm’
    lmcal: no visible global function definition for ‘lm’
    lmcal: no visible global function definition for ‘update’
    lmcal: no visible global function definition for ‘predict’
    lof: no visible global function definition for ‘anova’
    nlscal: no visible global function definition for ‘nls’
    nlscal: no visible global function definition for ‘loess’
    nlscal: no visible global function definition for ‘predict’
    nlscal: no visible global function definition for ‘lm’
    plot.lmcal : plotcurve: no visible global function definition for
     ‘plot’
    plot.lmcal : plotresiduals: no visible global function definition for
     ‘plot’
    plot.lmcal : plotresiduals: no visible global function definition for
     ‘abline’
    plot.lmcal : plotresiduals: no visible global function definition for
     ‘loess’
    plot.lmcal : plotresiduals: no visible global function definition for
     ‘predict’
    plot.lmcal : plotchronologic: no visible global function definition for
     ‘plot’
    plot.lmcal : plotchronologic: no visible global function definition for
     ‘abline’
    plot.lmcal : plotchronologic: no visible global function definition for
     ‘loess’
    plot.lmcal : plotchronologic: no visible global function definition for
     ‘fitted’
    plot.lmcal : plotqqplot: no visible global function definition for
     ‘qqnorm’
    plot.lmcal : plotqqplot: no visible global function definition for
     ‘qqline’
    plot.lmcal : plotcook: no visible global function definition for ‘plot’
    plot.lmcal: no visible global function definition for ‘plot’
    plot.lmcal: no visible global function definition for ‘abline’
    plot.lmcal: no visible global function definition for ‘mtext’
    plot.nlscal : plotcurve: no visible global function definition for
     ‘plot’
    plot.nlscal : plotresiduals: no visible global function definition for
     ‘plot’
    plot.nlscal : plotresiduals: no visible global function definition for
     ‘abline’
    plot.nlscal : plotresiduals: no visible global function definition for
     ‘loess’
    plot.nlscal : plotresiduals: no visible global function definition for
     ‘predict’
    plot.nlscal : plotchronologic: no visible global function definition
     for ‘plot’
    plot.nlscal : plotchronologic: no visible global function definition
     for ‘abline’
    plot.nlscal : plotchronologic: no visible global function definition
     for ‘loess’
    plot.nlscal : plotchronologic: no visible global function definition
     for ‘fitted’
    plot.nlscal : plotqqplot: no visible global function definition for
     ‘qqnorm’
    plot.nlscal : plotqqplot: no visible global function definition for
     ‘qqline’
    plot.nlscal : plotcook: no visible global function definition for
     ‘plot’
    predict.lmcal : inverse.predict: no visible global function definition
     for ‘coefficients’
    predict.lmcal: no visible global function definition for ‘predict’
    predict.lmcal: no visible global function definition for ‘df.residual’
    predict.lmcal: no visible global function definition for ‘qt’
    predict.lmcal: no visible global function definition for ‘qnorm’
    predict.nlscal : pred: no visible global function definition for
     ‘predict’
    predict.nlscal: no visible global function definition for ‘uniroot’
    print.lmcal: no visible global function definition for ‘AIC’
    print.lmcal: no visible global function definition for ‘printCoefmat’
    print.nlscal: no visible global function definition for ‘AIC’
    print.nlscal: no visible global function definition for ‘printCoefmat’
    residuals.cal: no visible global function definition for ‘residuals’
    summary.lmcal : durbin: no visible global function definition for
     ‘model.frame’
    summary.lmcal : durbin: no visible global function definition for
     ‘model.response’
    summary.lmcal : durbin: no visible global function definition for
     ‘model.matrix’
    summary.lmcal : durbin: no visible global function definition for
     ‘residuals’
    summary.lmcal : durbin: no visible global function definition for
     ‘filter’
    summary.lmcal : durbin: no visible global function definition for
     ‘pnorm’
    summary.lmcal: no visible global function definition for ‘pnorm’
    summary.lmcal: no visible global function definition for ‘shapiro.test’
    summary.lmcal: no visible global function definition for ‘residuals’
    summary.lmcal: no visible global function definition for ‘quantile’
    summary.lmcal: no visible global function definition for ‘AIC’
    summary.lmcal: no visible global function definition for
     ‘bartlett.test’
    summary.lmcal: no visible binding for global variable ‘var’
    summary.lmcal: no visible global function definition for ‘printCoefmat’
    summary.nlscal : durbin: no visible global function definition for
     ‘residuals’
    summary.nlscal: no visible global function definition for ‘AIC’
    summary.nlscal: no visible global function definition for
     ‘shapiro.test’
    summary.nlscal: no visible global function definition for ‘residuals’
    summary.nlscal: no visible global function definition for ‘quantile’
    summary.nlscal: no visible global function definition for
     ‘bartlett.test’
    summary.nlscal: no visible binding for global variable ‘var’
    summary.nlscal: no visible global function definition for
     ‘printCoefmat’
    vstat: no visible global function definition for ‘anova’
    vstat: no visible global function definition for ‘aov’
    Undefined global functions or variables:
     AIC IQR abline anova ansari.test aov bartlett.test coefficients
     confint df.residual filter fitted fligner.test kruskal.test lm loess
     mad median model.frame model.matrix model.response mtext nls plot
     pnorm predict printCoefmat qchisq qnorm qqline qqnorm qt quantile
     residuals sd shapiro.test t.test uniroot update var var.test
     wilcox.test
    Consider adding
     importFrom("graphics", "abline", "mtext", "plot")
     importFrom("stats", "AIC", "IQR", "anova", "ansari.test", "aov",
     "bartlett.test", "coefficients", "confint", "df.residual",
     "filter", "fitted", "fligner.test", "kruskal.test", "lm",
     "loess", "mad", "median", "model.frame", "model.matrix",
     "model.response", "nls", "pnorm", "predict", "printCoefmat",
     "qchisq", "qnorm", "qqline", "qqnorm", "qt", "quantile",
     "residuals", "sd", "shapiro.test", "t.test", "uniroot",
     "update", "var", "var.test", "wilcox.test")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.13
Check: Rd line widths
Result: NOTE
    Rd file 'dstat.Rd':
     \usage lines wider than 90 characters:
     na.rm = FALSE, conf.level = 0.95, alternative = c("two.sided", "less", "greater"), ansari = FALSE)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.13
Check: examples
Result: ERROR
    Running examples in ‘quantchem-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: AIC.cal
    > ### Title: Akaike's An Information Criterion for calibration models
    > ### Aliases: AIC.cal
    > ### Keywords: models
    >
    > ### ** Examples
    >
    > data(ibuprofen)
    > attach(ibuprofen)
    > fit = lmcal(conc,area)
    Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
     Assuming constant prediction variance even though model fit is weighted
    
    Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
     Assuming constant prediction variance even though model fit is weighted
    
    Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
     Assuming constant prediction variance even though model fit is weighted
    
    Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
     Assuming constant prediction variance even though model fit is weighted
    
    Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
     Assuming constant prediction variance even though model fit is weighted
    
    Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
     Assuming constant prediction variance even though model fit is weighted
    
    Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
     Assuming constant prediction variance even though model fit is weighted
    
    Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
     Assuming constant prediction variance even though model fit is weighted
    
    Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
     Assuming constant prediction variance even though model fit is weighted
    
    Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
     Assuming constant prediction variance even though model fit is weighted
    
    Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
     Assuming constant prediction variance even though model fit is weighted
    
    Warning in predict.lm(res$models[[i]], interval = "prediction", level = 0.95, :
     Assuming constant prediction variance even though model fit is weighted
    
    > AIC(fit)
    Error in UseMethod("logLik") :
     no applicable method for 'logLik' applied to an object of class "c('lmcal', 'cal')"
    Calls: AIC -> AIC.default -> ll
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64