CRAN Package Check Results for Package rJava

Last updated on 2014-08-30 11:51:35.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9-6 11.67 26.20 37.88 NOTE
r-devel-linux-x86_64-debian-gcc 0.9-6 11.38 25.14 36.52 NOTE
r-devel-linux-x86_64-fedora-clang 0.9-6 62.04 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9-6 59.56 NOTE
r-devel-osx-x86_64-clang 0.9-6 73.21 NOTE
r-devel-windows-ix86+x86_64 0.9-6 43.00 50.00 93.00 WARN
r-patched-linux-x86_64 0.9-6 11.76 26.42 38.18 NOTE
r-patched-solaris-sparc 0.9-6 367.90 NOTE
r-patched-solaris-x86 0.9-6 84.20 NOTE
r-release-linux-ix86 0.9-6 16.66 33.69 50.34 WARN
r-release-linux-x86_64 0.9-6 11.60 26.54 38.14 NOTE
r-release-osx-x86_64-mavericks 0.9-6 NOTE
r-release-osx-x86_64-snowleopard 0.9-6 NOTE
r-release-windows-ix86+x86_64 0.9-6 57.00 65.00 122.00 WARN
r-oldrel-windows-ix86+x86_64 0.9-6 42.00 72.00 114.00 NOTE

Memtest notes: valgrind

Check Details

Version: 0.9-6
Check: R code for possible problems
Result: NOTE
    Found the following possibly unsafe calls:
    File ‘rJava/R/import.R’:
     unlockBinding(IMPORTER, env = env)
     assignInNamespace(IMPORTER, importer, envir = env)
    File ‘rJava/R/jinit.R’:
     unlockBinding(x, .env)
     unlockBinding(x, pe)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9-6
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
     Found ‘stderr’, possibly from ‘stderr’ (C)
     Found ‘stdout’, possibly from ‘stdout’ (C)
    File ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG. The
    detected symbols are linked into the code but might come from libraries
    and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.9-6
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so’:
     Found ‘stderr’, possibly from ‘stderr’ (C)
     Found ‘stdout’, possibly from ‘stdout’ (C)
    File ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG. The
    detected symbols are linked into the code but might come from libraries
    and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.9-6
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘getsp.class’ ‘getsp.java’ ‘install-sh’ ‘jri’ ‘version’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.9-6
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/data/gannet/ripley/R/packages/tests-clang/rJava.Rcheck/rJava/libs/rJava.so’:
     Found ‘stderr’, possibly from ‘stderr’ (C)
     Found ‘stdout’, possibly from ‘stdout’ (C)
    File ‘/data/gannet/ripley/R/packages/tests-clang/rJava.Rcheck/rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG. The
    detected symbols are linked into the code but might come from libraries
    and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.9-6
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/data/gannet/ripley/R/packages/tests-devel/rJava.Rcheck/rJava/libs/rJava.so’:
     Found ‘stderr’, possibly from ‘stderr’ (C)
     Found ‘stdout’, possibly from ‘stdout’ (C)
    File ‘/data/gannet/ripley/R/packages/tests-devel/rJava.Rcheck/rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG. The
    detected symbols are linked into the code but might come from libraries
    and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.9-6
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/Users/ripley/R/packages/tests-devel/rJava.Rcheck/rJava/libs/rJava.so’:
     Found ‘___stderrp’, possibly from ‘stderr’ (C)
     Found ‘___stdoutp’, possibly from ‘stdout’ (C)
    File ‘/Users/ripley/R/packages/tests-devel/rJava.Rcheck/rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG. The
    detected symbols are linked into the code but might come from libraries
    and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-clang

Version: 0.9-6
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Rengine.c:121:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:159:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:219:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:228:9: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:234:9: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:241:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:242:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:243:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:244:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:245:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:246:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:247:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:248:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:266:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:335:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:341:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:347:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:353:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:359:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:365:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:371:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:377:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:387:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:441:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:473:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:481:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:491:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:501:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:516:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:526:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:560:51: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     jri.c:193:26: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     jri.c:308:27: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     jri_glue.c:24:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.9-6
Check: compiled code
Result: NOTE
    Note: information on .o files for i386 is not available
    Note: information on .o files for x64 is not available
    File 'd:/Rcompile/CRANpkg/lib/3.2/rJava/libs/i386/rJava.dll':
     Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    File 'd:/Rcompile/CRANpkg/lib/3.2/rJava/libs/x64/rJava.dll':
     Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    File 'd:/Rcompile/CRANpkg/lib/3.2/rJava/libs/i386/rJava.dll':
     Found non-API call to R: 'R_GlobalContext'
    File 'd:/Rcompile/CRANpkg/lib/3.2/rJava/libs/x64/rJava.dll':
     Found non-API call to R: 'R_GlobalContext'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG. The
    detected symbols are linked into the code but might come from libraries
    and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-devel-windows-ix86+x86_64

Version: 0.9-6
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so’:
     Found ‘stderr’, possibly from ‘stderr’ (C)
     Found ‘stdout’, possibly from ‘stdout’ (C)
    File ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console. The detected symbols
    are linked into the code but might come from libraries and not actually
    be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-patched-linux-x86_64

Version: 0.9-6
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/home/ripley/R/Lib32/rJava/libs/rJava.so’:
     Found ‘exit’, possibly from ‘exit’ (C)
    File ‘/home/ripley/R/Lib32/rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console. The detected symbols
    are linked into the code but might come from libraries and not actually
    be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.9-6
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     jri_glue.c:24:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     jri.h:21:20: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     jri.c:308:27: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Flavor: r-release-linux-ix86

Version: 0.9-6
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/rJava/libs/rJava.so’:
     Found ‘stderr’, possibly from ‘stderr’ (C)
     Found ‘stdout’, possibly from ‘stdout’ (C)
    File ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console. The detected symbols
    are linked into the code but might come from libraries and not actually
    be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-release-linux-ix86, r-release-linux-x86_64

Version: 0.9-6
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/Builds/CRAN-QA-Simon/packages/mavericks-x86_64/results/3.1/rJava.Rcheck/rJava/libs/rJava.so’:
     Found ‘___stderrp’, possibly from ‘stderr’ (C)
     Found ‘___stdoutp’, possibly from ‘stdout’ (C)
    File ‘/Builds/CRAN-QA-Simon/packages/mavericks-x86_64/results/3.1/rJava.Rcheck/rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console. The detected symbols
    are linked into the code but might come from libraries and not actually
    be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9-6
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File '/Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/snowleopard-x86_64/results/3.1/rJava.Rcheck/rJava/libs/rJava.so':
     Found '___stderrp', possibly from 'stderr' (C)
     Found '___stdoutp', possibly from 'stdout' (C)
    File '/Volumes/XT3/Builds/R-dev-web/QA/Simon/packages/snowleopard-x86_64/results/3.1/rJava.Rcheck/rJava/libs/rJava.so':
     Found non-API call to R: 'R_GlobalContext'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console. The detected symbols
    are linked into the code but might come from libraries and not actually
    be called.
    Compiled code should not call non-API entry points in R.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard

Version: 0.9-6
Check: compiled code
Result: NOTE
    Note: information on .o files for i386 is not available
    Note: information on .o files for x64 is not available
    File 'd:/Rcompile/CRANpkg/lib/3.1/rJava/libs/i386/rJava.dll':
     Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    File 'd:/Rcompile/CRANpkg/lib/3.1/rJava/libs/x64/rJava.dll':
     Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    File 'd:/Rcompile/CRANpkg/lib/3.1/rJava/libs/i386/rJava.dll':
     Found non-API call to R: 'R_GlobalContext'
    File 'd:/Rcompile/CRANpkg/lib/3.1/rJava/libs/x64/rJava.dll':
     Found non-API call to R: 'R_GlobalContext'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console. The detected symbols
    are linked into the code but might come from libraries and not actually
    be called.
    Compiled code should not call non-API entry points in R.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-release-windows-ix86+x86_64

Version: 0.9-6
Check: compiled code
Result: NOTE
    Note: information on .o files for i386 is not available
    Note: information on .o files for x64 is not available
    File 'd:/Rcompile/CRANpkg/lib/3.0/rJava/libs/i386/rJava.dll':
     Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    File 'd:/Rcompile/CRANpkg/lib/3.0/rJava/libs/x64/rJava.dll':
     Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    File 'd:/Rcompile/CRANpkg/lib/3.0/rJava/libs/i386/rJava.dll':
     Found non-API call to R: 'R_GlobalContext'
    File 'd:/Rcompile/CRANpkg/lib/3.0/rJava/libs/x64/rJava.dll':
     Found non-API call to R: 'R_GlobalContext'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console. The detected symbols
    are linked into the code but might come from libraries and not actually
    be called.
    Compiled code should not call non-API entry points in R.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-oldrel-windows-ix86+x86_64