CRAN Package Check Results for Package rJava

Last updated on 2015-08-03 23:48:05.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9-7 11.73 24.12 35.85 NOTE
r-devel-linux-x86_64-debian-gcc 0.9-7 10.94 24.26 35.20 NOTE
r-devel-linux-x86_64-fedora-clang 0.9-7 55.01 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9-7 51.81 NOTE
r-devel-osx-x86_64-clang 0.9-7 48.27 NOTE
r-devel-windows-ix86+x86_64 0.9-7 59.00 47.00 106.00 ERROR
r-patched-linux-x86_64 0.9-7 10.93 23.34 34.27 NOTE
r-patched-solaris-sparc 0.9-7 314.00 NOTE
r-patched-solaris-x86 0.9-7 74.70 NOTE
r-release-linux-x86_64 0.9-7 11.08 22.94 34.02 NOTE
r-release-osx-x86_64-mavericks 0.9-7 NOTE
r-release-windows-ix86+x86_64 0.9-7 59.00 60.00 119.00 WARN
r-oldrel-windows-ix86+x86_64 0.9-7 67.00 66.00 133.00 WARN

Memtest notes: valgrind

Check Details

Version: 0.9-7
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘getsp.class’ ‘getsp.java’ ‘install-sh’ ‘jri’ ‘version’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.9-7
Check: R code for possible problems
Result: NOTE
    Found the following possibly unsafe calls:
    File ‘rJava/R/import.R’:
     unlockBinding(IMPORTER, env = env)
     assignInNamespace(IMPORTER, importer, envir = env)
    File ‘rJava/R/jinit.R’:
     unlockBinding(x, .env)
     unlockBinding(x, pe)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9-7
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9-7
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/rJava/libs/rJava.so’:
     Found ‘stderr’, possibly from ‘stderr’ (C)
     Found ‘stdout’, possibly from ‘stdout’ (C)
    File ‘rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    The detected symbols are linked into the code but might come from
    libraries and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.9-7
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rJava/libs/rJava.so’:
     Found ‘stderr’, possibly from ‘stderr’ (C)
     Found ‘stdout’, possibly from ‘stdout’ (C)
    File ‘rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    The detected symbols are linked into the code but might come from
    libraries and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.9-7
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/data/gannet/ripley/R/packages/tests-clang/rJava.Rcheck/rJava/libs/rJava.so’:
     Found ‘stderr’, possibly from ‘stderr’ (C)
     Found ‘stdout’, possibly from ‘stdout’ (C)
    File ‘rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    The detected symbols are linked into the code but might come from
    libraries and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.9-7
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/data/gannet/ripley/R/packages/tests-devel/rJava.Rcheck/rJava/libs/rJava.so’:
     Found ‘stderr’, possibly from ‘stderr’ (C)
     Found ‘stdout’, possibly from ‘stdout’ (C)
    File ‘rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    The detected symbols are linked into the code but might come from
    libraries and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.9-7
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/Users/ripley/R/packages/tests-devel/rJava.Rcheck/rJava/libs/rJava.so’:
     Found ‘___stderrp’, possibly from ‘stderr’ (C)
     Found ‘___stdoutp’, possibly from ‘stdout’ (C)
    File ‘rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    The detected symbols are linked into the code but might come from
    libraries and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-clang

Version: 0.9-7
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Rengine.c:121:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:159:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:219:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:228:9: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:234:9: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:241:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:242:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:243:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:244:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:245:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:246:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:247:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:248:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:266:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:335:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:341:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:347:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:353:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:359:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:365:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:371:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:377:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:387:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:441:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:473:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:481:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:491:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:501:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:516:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:526:12: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     Rengine.c:560:51: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     jri.c:193:26: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     jri.c:308:27: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
     jri_glue.c:24:15: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9-7
Check: compiled code
Result: NOTE
    Note: information on .o files for i386 is not available
    Note: information on .o files for x64 is not available
    File 'd:/Rcompile/CRANpkg/lib/3.3/rJava/libs/i386/rJava.dll':
     Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    File 'd:/Rcompile/CRANpkg/lib/3.3/rJava/libs/x64/rJava.dll':
     Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    File 'rJava/libs/i386/rJava.dll':
     Found non-API call to R: 'R_GlobalContext'
    File 'rJava/libs/x64/rJava.dll':
     Found non-API call to R: 'R_GlobalContext'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    The detected symbols are linked into the code but might come from
    libraries and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-devel-windows-ix86+x86_64

Version: 0.9-7
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'rJava-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: jequals
    > ### Title: Comparing Java References
    > ### Aliases: .jequals .jcompare !=,ANY,jobjRef-method
    > ### !=,jobjRef,jobjRef-method !=,jobjRef,ANY-method ==,ANY,jobjRef-method
    > ### ==,jobjRef,jobjRef-method ==,jobjRef,ANY-method <,ANY,jobjRef-method
    > ### <,jobjRef,jobjRef-method <,jobjRef,ANY-method >,ANY,jobjRef-method
    > ### >,jobjRef,jobjRef-method >,jobjRef,ANY-method <=,ANY,jobjRef-method
    > ### <=,jobjRef,jobjRef-method <=,jobjRef,ANY-method >=,ANY,jobjRef-method
    > ### >=,jobjRef,jobjRef-method >=,jobjRef,ANY-method
    > ### Keywords: interface
    >
    > ### ** Examples
    >
    > ## Don't show:
    > .jinit()
    [1] 0
    > ## End(Don't show)
    > s <- .jnew("java/lang/String", "foo")
    > .jequals(s, "foo") # TRUE
    [1] TRUE
    > .jequals(s, "foo", strict=TRUE) # FALSE - "foo" is not a Java object
    [1] FALSE
    > t <- s
    > .jequals(s, t, strict=TRUE) # TRUE
    [1] TRUE
    >
    > s=="foo" # TRUE
    [1] TRUE
    >
    > ## Don't show:
    >
    > stopifnot(
    + .jequals(s, "foo"),
    + !.jequals(s, "foo", strict=TRUE),
    + .jequals(s, t, strict=TRUE),
    + s == "foo"
    + )
    > ## End(Don't show)
    >
    > Double <- J("java.lang.Double")
    > d1 <- new( Double, 0.0 )
    > d2 <- new( Double, 1.0 )
    > d3 <- new( Double, 0.0 )
    >
    > d1 < d2
    [1] TRUE
    > d1 <= d3
    [1] TRUE
    > d1 >= d3
    [1] TRUE
    > d1 > d2
    [1] FALSE
    >
    > # cannot compare a Double and a String
    > try( d1 < "foo" )
    Error in call[[1L]] : wrong arguments for subsetting an environment
    Calls: try ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.9-7
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'rJava-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: jequals
    > ### Title: Comparing Java References
    > ### Aliases: .jequals .jcompare !=,ANY,jobjRef-method
    > ### !=,jobjRef,jobjRef-method !=,jobjRef,ANY-method ==,ANY,jobjRef-method
    > ### ==,jobjRef,jobjRef-method ==,jobjRef,ANY-method <,ANY,jobjRef-method
    > ### <,jobjRef,jobjRef-method <,jobjRef,ANY-method >,ANY,jobjRef-method
    > ### >,jobjRef,jobjRef-method >,jobjRef,ANY-method <=,ANY,jobjRef-method
    > ### <=,jobjRef,jobjRef-method <=,jobjRef,ANY-method >=,ANY,jobjRef-method
    > ### >=,jobjRef,jobjRef-method >=,jobjRef,ANY-method
    > ### Keywords: interface
    >
    > ### ** Examples
    >
    > ## Don't show:
    > .jinit()
    [1] 0
    > ## End(Don't show)
    > s <- .jnew("java/lang/String", "foo")
    > .jequals(s, "foo") # TRUE
    [1] TRUE
    > .jequals(s, "foo", strict=TRUE) # FALSE - "foo" is not a Java object
    [1] FALSE
    > t <- s
    > .jequals(s, t, strict=TRUE) # TRUE
    [1] TRUE
    >
    > s=="foo" # TRUE
    [1] TRUE
    >
    > ## Don't show:
    >
    > stopifnot(
    + .jequals(s, "foo"),
    + !.jequals(s, "foo", strict=TRUE),
    + .jequals(s, t, strict=TRUE),
    + s == "foo"
    + )
    > ## End(Don't show)
    >
    > Double <- J("java.lang.Double")
    > d1 <- new( Double, 0.0 )
    > d2 <- new( Double, 1.0 )
    > d3 <- new( Double, 0.0 )
    >
    > d1 < d2
    [1] TRUE
    > d1 <= d3
    [1] TRUE
    > d1 >= d3
    [1] TRUE
    > d1 > d2
    [1] FALSE
    >
    > # cannot compare a Double and a String
    > try( d1 < "foo" )
    Error in call[[1L]] : wrong arguments for subsetting an environment
    Calls: try ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.9-7
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/rJava/libs/rJava.so’:
     Found ‘stderr’, possibly from ‘stderr’ (C)
     Found ‘stdout’, possibly from ‘stdout’ (C)
    File ‘rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    The detected symbols are linked into the code but might come from
    libraries and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-patched-linux-x86_64

Version: 0.9-7
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/home/ripley/R/Lib32/rJava/libs/rJava.so’:
     Found ‘exit’, possibly from ‘exit’ (C)
    File ‘rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    The detected symbols are linked into the code but might come from
    libraries and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.9-7
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/rJava/libs/rJava.so’:
     Found ‘stderr’, possibly from ‘stderr’ (C)
     Found ‘stdout’, possibly from ‘stdout’ (C)
    File ‘rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    The detected symbols are linked into the code but might come from
    libraries and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-release-linux-x86_64

Version: 0.9-7
Check: compiled code
Result: NOTE
    Note: information on .o files is not available
    File ‘/Builds/CRAN-QA-Simon/packages/mavericks-x86_64/results/3.2/rJava.Rcheck/rJava/libs/rJava.so’:
     Found ‘___stderrp’, possibly from ‘stderr’ (C)
     Found ‘___stdoutp’, possibly from ‘stdout’ (C)
    File ‘rJava/libs/rJava.so’:
     Found non-API call to R: ‘R_GlobalContext’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    The detected symbols are linked into the code but might come from
    libraries and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9-7
Check: compiled code
Result: NOTE
    Note: information on .o files for i386 is not available
    Note: information on .o files for x64 is not available
    File 'd:/Rcompile/CRANpkg/lib/3.2/rJava/libs/i386/rJava.dll':
     Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    File 'd:/Rcompile/CRANpkg/lib/3.2/rJava/libs/x64/rJava.dll':
     Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    File 'rJava/libs/i386/rJava.dll':
     Found non-API call to R: 'R_GlobalContext'
    File 'rJava/libs/x64/rJava.dll':
     Found non-API call to R: 'R_GlobalContext'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    The detected symbols are linked into the code but might come from
    libraries and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-release-windows-ix86+x86_64

Version: 0.9-7
Check: compiled code
Result: NOTE
    Note: information on .o files for i386 is not available
    Note: information on .o files for x64 is not available
    File 'd:/Rcompile/CRANpkg/lib/3.1/rJava/libs/i386/rJava.dll':
     Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    File 'd:/Rcompile/CRANpkg/lib/3.1/rJava/libs/x64/rJava.dll':
     Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    File 'rJava/libs/i386/rJava.dll':
     Found non-API call to R: 'R_GlobalContext'
    File 'rJava/libs/x64/rJava.dll':
     Found non-API call to R: 'R_GlobalContext'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    The detected symbols are linked into the code but might come from
    libraries and not actually be called.
    Compiled code should not call non-API entry points in R.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-oldrel-windows-ix86+x86_64