CRAN Package Check Results for Package randomSurvivalForest

Last updated on 2014-10-23 21:46:45.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.6.4 3.48 31.98 35.45 NOTE
r-devel-linux-x86_64-debian-gcc 3.6.4 5.15 31.73 36.88 NOTE
r-devel-linux-x86_64-fedora-clang 3.6.4 67.34 NOTE
r-devel-linux-x86_64-fedora-gcc 3.6.4 65.38 NOTE
r-devel-osx-x86_64-clang 3.6.4 56.43 NOTE
r-devel-windows-ix86+x86_64 3.6.4 25.00 76.00 101.00 NOTE
r-patched-linux-x86_64 3.6.4 5.20 31.48 36.68 NOTE
r-patched-solaris-sparc 3.6.4 262.70 ERROR
r-patched-solaris-x86 3.6.4 61.00 ERROR
r-release-linux-ix86 3.6.4 6.92 44.48 51.40 OK
r-release-linux-x86_64 3.6.4 5.14 31.49 36.63 OK
r-release-osx-x86_64-mavericks 3.6.4 OK
r-release-windows-ix86+x86_64 3.6.4 24.00 95.00 119.00 OK
r-oldrel-windows-ix86+x86_64 3.6.4 38.00 96.00 134.00 OK

Memtest notes: UBSAN-gcc UBSAN

Check Details

Version: 3.6.4
Check: R code for possible problems
Result: NOTE
    getDataDictNode: no visible global function definition for ‘xmlNode’
    getDataDictNode: no visible global function definition for
     ‘append.XMLNode’
    rsf2rfz: no visible global function definition for ‘xmlTreeParse’
    rsf2rfz: no visible global function definition for ‘xmlRoot’
    rsf2rfz: no visible global function definition for ‘append.XMLNode’
    rsf2rfz: no visible global function definition for ‘saveXML’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 3.6.4
Check: examples
Result: ERROR
    Running examples in ‘randomSurvivalForest-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: plot.ensemble
    > ### Title: Plot Ensemble Estimates
    > ### Aliases: plot.ensemble plot.ensemble.rsf
    > ### Keywords: file
    >
    > ### ** Examples
    >
    > data(veteran, package = "randomSurvivalForest")
    > v.out <- rsf(Surv(time, status) ~ ., veteran, ntree = 1000)
    Warning in rsf(Surv(time, status) ~ ., veteran, ntree = 1000) :
    
    This package has been deprecated. Please upgrade to the new package 'randomForestSRC'.
    
    Error: segfault from C stack overflow
    Execution halted
Flavor: r-patched-solaris-sparc

Version: 3.6.4
Check: examples
Result: ERROR
    Running examples in ‘randomSurvivalForest-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: plot.ensemble
    > ### Title: Plot Ensemble Estimates
    > ### Aliases: plot.ensemble plot.ensemble.rsf
    > ### Keywords: file
    >
    > ### ** Examples
    >
    > data(veteran, package = "randomSurvivalForest")
    > v.out <- rsf(Surv(time, status) ~ ., veteran, ntree = 1000)
    Warning in rsf(Surv(time, status) ~ ., veteran, ntree = 1000) :
    
    This package has been deprecated. Please upgrade to the new package 'randomForestSRC'.
    
    
     *** caught segfault ***
    address fe8e7520, cause 'invalid permissions'
    
    Traceback:
     1: .Call("rsfGrow", as.integer(do.trace), as.integer(impute.only + varUsedBits + importanceBits + (32 * (if (forest) 1 else 0)) + (8 * (if (proximity) 1 else 0)) + (2^15 * (if (split.depth) 1 else 0))), as.integer(seed), as.integer(splitrule.idx), as.integer(splitrule.nsplit), as.integer(mtry), as.integer(ntree), as.integer(nodesize), as.integer(n), as.double(Time), as.double(Cens), as.integer(ncov), as.numeric(predictors), as.integer(length(timeInterest)), as.double(timeInterest), as.double(predictorWt), as.character(predictorType), as.integer(nimpute))
     2: rsf(Surv(time, status) ~ ., veteran, ntree = 1000)
    aborting ...
Flavor: r-patched-solaris-x86