CRAN Package Check Results for Package rbamtools

Last updated on 2016-09-30 06:47:42.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.16.0 11.57 57.71 69.29 ERROR
r-devel-linux-x86_64-debian-gcc 2.16.0 14.17 55.76 69.93 ERROR
r-devel-linux-x86_64-fedora-clang 2.16.0 148.96 ERROR
r-devel-linux-x86_64-fedora-gcc 2.16.0 141.07 ERROR
r-devel-macos-x86_64-clang 2.16.0 115.40 ERROR
r-devel-windows-ix86+x86_64 2.16.0 69.00 158.00 227.00 ERROR
r-patched-linux-x86_64 2.16.0 12.34 55.30 67.64 OK
r-patched-solaris-sparc 2.16.0 820.70 OK
r-patched-solaris-x86 2.16.0 167.90 OK
r-release-linux-x86_64 2.16.0 13.18 55.84 69.02 OK
r-release-osx-x86_64-mavericks 2.16.0 OK
r-release-windows-ix86+x86_64 2.16.0 38.00 123.00 161.00 OK
r-oldrel-windows-ix86+x86_64 2.16.0 67.00 180.00 247.00 OK

Check Details

Version: 2.16.0
Check: files in ‘vignettes’
Result: WARN
    Files in the 'vignettes' directory newer than all files in 'inst/doc':
     ‘rbamtools.Rnw’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 2.16.0
Check: tests
Result: ERROR
    Running the tests in ‘tests/test_bam_align.r’ failed.
    Last 13 lines of output:
     Type 'contributors()' for more information and
     'citation()' on how to cite R or R packages in publications.
    
     Type 'demo()' for some demos, 'help()' for on-line help, or
     'help.start()' for an HTML browser interface to help.
     Type 'q()' to quit R.
    
     >
     >
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - #
     > # test_bam_align: General
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - #
     > align <- getNextAlign(reader)
     Error: could not find function "getNextAlign"
     Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 2.16.0
Check: running tests for arch ‘i386’
Result: ERROR
    Running the tests in 'tests/test_bam_align.r' failed.
    Last 13 lines of output:
     Type 'contributors()' for more information and
     'citation()' on how to cite R or R packages in publications.
    
     Type 'demo()' for some demos, 'help()' for on-line help, or
     'help.start()' for an HTML browser interface to help.
     Type 'q()' to quit R.
    
     >
     >
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - #
     > # test_bam_align: General
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - #
     > align <- getNextAlign(reader)
     Error: could not find function "getNextAlign"
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 2.16.0
Check: running tests for arch ‘x64’
Result: ERROR
    Running the tests in 'tests/test_bam_align.r' failed.
    Last 13 lines of output:
     Type 'contributors()' for more information and
     'citation()' on how to cite R or R packages in publications.
    
     Type 'demo()' for some demos, 'help()' for on-line help, or
     'help.start()' for an HTML browser interface to help.
     Type 'q()' to quit R.
    
     >
     >
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - #
     > # test_bam_align: General
     > # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - #
     > align <- getNextAlign(reader)
     Error: could not find function "getNextAlign"
     Execution halted
Flavor: r-devel-windows-ix86+x86_64