CRAN Package Check Results for Package rbamtools

Last updated on 2015-06-30 22:47:32.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.10.0 5.84 25.01 30.85 NOTE
r-devel-linux-x86_64-debian-gcc 2.10.0 9.10 24.56 33.66 NOTE
r-devel-linux-x86_64-fedora-clang 2.10.0 60.28 NOTE
r-devel-linux-x86_64-fedora-gcc 2.10.0 60.80 NOTE
r-devel-osx-x86_64-clang 2.10.0 58.12 NOTE
r-devel-windows-ix86+x86_64 2.10.0 37.00 55.00 92.00 NOTE
r-patched-linux-x86_64 2.10.0 8.88 25.20 34.08 NOTE
r-patched-solaris-sparc 2.10.0 406.40 NOTE
r-patched-solaris-x86 2.10.0 83.60 NOTE
r-release-linux-x86_64 2.10.0 9.28 25.80 35.08 NOTE
r-release-osx-x86_64-mavericks 2.10.0 NOTE
r-release-windows-ix86+x86_64 2.10.0 35.00 59.00 94.00 NOTE
r-oldrel-windows-ix86+x86_64 2.10.0 49.00 54.00 103.00 OK

Check Details

Version: 2.10.0
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.10.0
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     as.data.frame.bamGapList as.data.frame.bamRange as.data.frame.gapList
     as.data.frame.gapSiteList as.data.frame.refSeqDict merge.bamGapList
     merge.gapSiteList summary.bamGapList
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.10.0
Check: R code for possible problems
Result: NOTE
    readSepGapTables: no visible global function definition for
     ‘write.table’
    plotAlignDepth,alignDepth: no visible global function definition for
     ‘par’
    plotAlignDepth,alignDepth: no visible global function definition for
     ‘layout’
    plotAlignDepth,alignDepth: no visible global function definition for
     ‘lcm’
    plotAlignDepth,alignDepth: no visible global function definition for
     ‘plot’
    plotAlignDepth,alignDepth: no visible global function definition for
     ‘polygon’
    plotAlignDepth,alignDepth: no visible global function definition for
     ‘mtext’
    plotAlignDepth,alignDepth: no visible global function definition for
     ‘lines’
    plotAlignDepth,alignDepth: no visible global function definition for
     ‘arrows’
    plotAlignDepth,alignDepth: no visible global function definition for
     ‘rect’
    plotAlignDepth,alignDepth: no visible global function definition for
     ‘text’
    plotQualQuant,bamRange: no visible global function definition for
     ‘plot’
    plotQualQuant,bamRange: no visible global function definition for
     ‘lines’
    plotQualQuant,bamRange: no visible global function definition for
     ‘legend’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc