CRAN Package Check Results for Package rbamtools

Last updated on 2014-07-23 12:47:33.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.9.11 5.36 22.35 27.71 OK
r-devel-linux-x86_64-debian-gcc 2.9.11 9.10 21.73 30.83 OK
r-devel-linux-x86_64-fedora-clang 2.9.11 59.43 OK
r-devel-linux-x86_64-fedora-gcc 2.9.11 62.57 OK
r-devel-osx-x86_64-clang 2.9.11 57.88 OK
r-devel-windows-ix86+x86_64 2.9.11 34.00 43.00 77.00 OK
r-patched-linux-x86_64 2.9.11 8.93 22.08 31.01 OK
r-patched-solaris-sparc 2.9.11 341.80 OK
r-patched-solaris-x86 2.9.11 85.90 OK
r-release-linux-ix86 2.9.11 11.60 31.37 42.97 OK
r-release-linux-x86_64 2.9.11 8.83 22.33 31.16 OK
r-release-osx-x86_64-mavericks 2.9.11 OK
r-release-osx-x86_64-snowleopard 2.9.11 ERROR
r-release-windows-ix86+x86_64 2.9.11 44.00 64.00 108.00 OK
r-oldrel-windows-ix86+x86_64 2.9.11 28.00 46.00 74.00 OK

Check Details

Version: 2.9.11
Check: examples
Result: ERROR
    Running examples in ‘rbamtools-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: range2fastq
    > ### Title: range2fastq
    > ### Aliases: range2fastq range2fastq-methods range2fastq,bamRange-method
    > ### Keywords: range2fastq range2fastq
    >
    > ### ** Examples
    >
    > bam<-system.file("extdata","accepted_hits.bam",package="rbamtools")
    > reader<-bamReader(bam,idx=TRUE)
    > coords<-as.integer(c(0,0,249250621))
    > range<-bamRange(reader,coords)
    > range2fastq(range,"range.fq.gz")
    Error in range2fastq(range, "range.fq.gz") :
     [bam_range_write_fastq] File could not be opened!
    Calls: range2fastq -> range2fastq -> .Call
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard