CRAN Package Check Results for Package rbamtools

Last updated on 2014-08-02 03:50:59.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.9.14 5.38 23.35 28.73 OK
r-devel-linux-x86_64-debian-gcc 2.9.14 9.05 22.88 31.93 OK
r-devel-linux-x86_64-fedora-clang 2.9.14 34.45 OK
r-devel-linux-x86_64-fedora-gcc 2.9.14 36.33 OK
r-devel-osx-x86_64-clang 2.9.14 58.69 OK
r-devel-windows-ix86+x86_64 2.9.14 29.00 44.00 73.00 OK
r-patched-linux-x86_64 2.9.14 8.90 23.22 32.12 OK
r-patched-solaris-sparc 2.9.14 404.30 OK
r-patched-solaris-x86 2.9.14 76.00 OK
r-release-linux-ix86 2.9.14 11.62 32.71 44.33 OK
r-release-linux-x86_64 2.9.14 9.20 23.61 32.80 OK
r-release-osx-x86_64-mavericks 2.9.11 OK
r-release-osx-x86_64-snowleopard 2.9.14 ERROR
r-release-windows-ix86+x86_64 2.9.14 29.00 50.00 79.00 OK
r-oldrel-windows-ix86+x86_64 2.9.14 30.00 54.00 84.00 OK

Check Details

Version: 2.9.14
Check: examples
Result: ERROR
    Running examples in rbamtools-Ex.R failed
    The error most likely occurred in:
    
    > ### Name: range2fastq
    > ### Title: range2fastq
    > ### Aliases: range2fastq range2fastq-methods range2fastq,bamRange-method
    > ### Keywords: range2fastq range2fastq
    >
    > ### ** Examples
    >
    > bam<-system.file("extdata","accepted_hits.bam",package="rbamtools")
    > reader<-bamReader(bam,idx=TRUE)
    > coords<-as.integer(c(0,0,249250621))
    > range<-bamRange(reader,coords)
    > range2fastq(range,"range.fq.gz")
    Error in range2fastq(range, "range.fq.gz") :
     [bam_range_write_fastq] File could not be opened!
    Calls: range2fastq -> range2fastq -> .Call
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard