CRAN Package Check Results for Package rbamtools

Last updated on 2017-03-31 01:49:21.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.16.6 10.13 63.78 73.91 OK
r-devel-linux-x86_64-debian-gcc 2.16.6 12.34 62.47 74.81 OK
r-devel-linux-x86_64-fedora-clang 2.16.6 101.21 OK --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 2.16.6 162.37 OK --no-stop-on-test-error
r-devel-macos-x86_64-clang 2.16.6 119.75 OK --no-stop-on-test-error
r-devel-windows-ix86+x86_64 2.16.6 50.00 229.00 279.00 OK
r-patched-linux-x86_64 2.16.6 11.06 63.23 74.29 OK
r-patched-solaris-sparc 2.16.6 904.90 OK
r-patched-solaris-x86 2.16.6 201.70 OK
r-release-linux-x86_64 2.16.6 13.07 57.38 70.45 OK
r-release-osx-x86_64-mavericks 2.16.6 OK
r-release-windows-ix86+x86_64 2.16.6 64.00 192.00 256.00 WARN
r-oldrel-windows-ix86+x86_64 2.16.6 60.00 211.00 271.00 OK

Check Details

Version: 2.16.6
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: refGenome
    Loading required package: doBy
    Loading required package: RSQLite
    [readPooledBamGaps] ( 1/1) List-size: 39 nAligns: 3230.
    [readPooledBamGaps] Finished.
    [readPooledBamGaps] ( 1/1) List-size: 39 nAligns: 3230.
    [readPooledBamGaps] Finished.
    Warning in text.default(xlim[1], 2, transcript, adj = 0, cex = 1.2) :
     font width unknown for character 0x9
    Warning in text.default(xlim[1], 2, transcript, adj = 0, cex = 1.2) :
     font width unknown for character 0x9
    Warning in text.default(xlim[1], 2, transcript, adj = 0, cex = 1.2) :
     font metrics unknown for character 0x9
    Warning in text.default(xlim[1], 2, transcript, adj = 0, cex = 1.2) :
     font metrics unknown for character 0x9
    [getGenePositions.ucscGenome] Adding 'start_codon' and 'stop_codon' positions.
    Warning: running command '"D:\compiler\texmf\miktex\bin\texify.exe" --quiet --pdf "rbamtools.tex" --max-iterations=20 -I "D:/RCompile/recent/R-3.3.3/share/texmf/tex/latex" -I "D:/RCompile/recent/R-3.3.3/share/texmf/bibtex/bst"' had status 1
    Error in find_vignette_product(name, by = "texi2pdf", engine = engine) :
     Failed to locate the 'texi2pdf' output file (by engine 'utils::Sweave') for vignette with name 'rbamtools'. The following files exist in directory '.': 'Rplots.pdf', 'rbamtools-048.pdf', 'rbamtools-050.pdf', 'rbamtools-052.pdf', 'rbamtools-059.pdf', 'rbamtools-060.pdf', 'rbamtools-061.pdf', 'rbamtools-concordance.tex', 'rbamtools-hist_gqs.pdf', 'rbamtools.Rnw', 'rbamtools.bib', 'rbamtools.tex'
    Calls: buildVignettes -> find_vignette_product
    Execution halted
Flavor: r-release-windows-ix86+x86_64