CRAN Package Check Results for Package rcdk

Last updated on 2016-05-31 17:51:46.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 3.3.5 1.69 42.78 44.47 OK
r-devel-linux-x86_64-fedora-clang 3.3.5 110.55 OK
r-devel-linux-x86_64-fedora-gcc 3.3.5 106.95 OK
r-devel-osx-x86_64-clang 3.3.5 95.55 OK
r-devel-windows-ix86+x86_64 3.3.5 6.00 83.00 89.00 OK
r-patched-linux-x86_64 3.3.5 1.86 44.36 46.22 OK
r-patched-solaris-sparc 3.3.5 323.80 ERROR
r-patched-solaris-x86 3.3.5 73.10 ERROR
r-release-linux-x86_64 3.3.5 1.70 43.05 44.75 OK
r-release-osx-x86_64-mavericks 3.3.5 ERROR
r-release-windows-ix86+x86_64 3.3.5 11.00 111.00 122.00 OK
r-oldrel-windows-ix86+x86_64 3.3.5 8.00 133.00 141.00 OK

Check Details

Version: 3.3.5
Check: examples
Result: ERROR
    Running examples in ‘rcdk-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: eval.desc
    > ### Title: Evaluate a Molecular Descriptor
    > ### Aliases: eval.desc
    > ### Keywords: programming
    >
    > ### ** Examples
    >
    > smiles <- c('CCC', 'c1ccccc1', 'CC(=O)C')
    > mols <- sapply(smiles, parse.smiles)
    >
    > dnames <- get.desc.names('constitutional')
    Error in .jcall("org/guha/rcdk/descriptors/DescriptorUtilities", "[Ljava/lang/String;", :
     RcallMethod: cannot determine object class
    Calls: get.desc.names -> .jcall -> .External
    Execution halted
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 3.3.5
Check: tests
Result: ERROR
    Running the tests in ‘tests/doRUnit.R’ failed.
    Last 13 lines of output:
     ERROR in test.desc.names: Error in .jcall("org/guha/rcdk/descriptors/DescriptorUtilities", "[Ljava/lang/String;", :
     RcallMethod: cannot determine object class
     ERROR in test.fp: Error in .jcall("org/openscience/cdk/DefaultChemObjectBuilder", "Lorg/openscience/cdk/interfaces/IChemObjectBuilder;", :
     java.lang.UnsupportedClassVersionError: org/guha/rcdk/descriptors/DescriptorUtilities : Unsupported major.minor version 52.0
     ERROR in test.get.smiles: Error in .jcall("org/guha/rcdk/util/Misc", "S", "getSmiles", molecule, :
     RcallMethod: cannot determine object class
     ERROR in test.get.smiles2: Error in .jcall("org/openscience/cdk/DefaultChemObjectBuilder", "Lorg/openscience/cdk/interfaces/IChemObjectBuilder;", :
     java.lang.UnsupportedClassVersionError: org/guha/rcdk/util/Misc : Unsupported major.minor version 52.0
     Error:
    
     unit testing failed (#test failures: 0, #R errors: 12)
    
     Execution halted
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 3.3.5
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: fingerprint
    
    Error: processing vignette 'rcdk.Rnw' failed with diagnostics:
     chunk 11
    Error in .jcall("org/guha/rcdk/util/Misc", "S", "getSmiles", molecule, :
     RcallMethod: cannot determine object class
    Execution halted
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 3.3.5
Check: examples
Result: ERROR
    Running examples in ‘rcdk-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: Molecule
    > ### Title: Operations on molecules
    > ### Aliases: get.exact.mass get.natural.mass is.neutral
    > ### convert.implicit.to.explicit
    > ### Keywords: programming
    >
    > ### ** Examples
    >
    > m <- parse.smiles('c1ccccc1')[[1]]
    Error in .jcall("org/openscience/cdk/DefaultChemObjectBuilder", "Lorg/openscience/cdk/interfaces/IChemObjectBuilder;", :
     RcallMethod: cannot determine object class
    Calls: parse.smiles ... get.smiles.parser -> .get.chem.object.builder -> .jcall -> .External
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 3.3.5
Check: tests
Result: ERROR
    Running the tests in ‘tests/doRUnit.R’ failed.
    Last 13 lines of output:
     ERROR in test.is.connected: Error in .jcall("org/openscience/cdk/DefaultChemObjectBuilder", "Lorg/openscience/cdk/interfaces/IChemObjectBuilder;", :
     java.lang.UnsupportedClassVersionError: org/openscience/cdk/DefaultChemObjectBuilder : Unsupported major.minor version 51.0
     ERROR in test.is.neutral: Error in .jcall("org/openscience/cdk/DefaultChemObjectBuilder", "Lorg/openscience/cdk/interfaces/IChemObjectBuilder;", :
     RcallMethod: cannot determine object class
     ERROR in test.get.smiles: Error in .jcall("org/openscience/cdk/DefaultChemObjectBuilder", "Lorg/openscience/cdk/interfaces/IChemObjectBuilder;", :
     java.lang.UnsupportedClassVersionError: org/openscience/cdk/DefaultChemObjectBuilder : Unsupported major.minor version 51.0
     ERROR in test.get.smiles2: Error in .jcall("org/openscience/cdk/DefaultChemObjectBuilder", "Lorg/openscience/cdk/interfaces/IChemObjectBuilder;", :
     RcallMethod: cannot determine object class
     Error:
    
     unit testing failed (#test failures: 0, #R errors: 27)
    
     Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 3.3.5
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘rcdk.Rnw’
     ...
    > library(rcdk)
    Loading required package: fingerprint
    
    > smile <- "c1ccccc1CC(=O)C(N)CC1CCCCOC1"
    
    > mol <- parse.smiles(smile)[[1]]
    
     When sourcing ‘rcdk.R’:
    Error: RcallMethod: cannot determine object class
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 3.3.5
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: fingerprint
    
    Error: processing vignette 'rcdk.Rnw' failed with diagnostics:
     chunk 6
    Error in .jcall("org/openscience/cdk/DefaultChemObjectBuilder", "Lorg/openscience/cdk/interfaces/IChemObjectBuilder;", :
     RcallMethod: cannot determine object class
    Execution halted
Flavor: r-release-osx-x86_64-mavericks