CRAN Package Check Results for Package refGenome

Last updated on 2016-09-26 17:48:28.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7.0 5.19 42.01 47.21 ERROR
r-devel-linux-x86_64-debian-gcc 1.7.0 5.72 42.43 48.15 ERROR
r-devel-linux-x86_64-fedora-clang 1.7.0 102.56 ERROR
r-devel-linux-x86_64-fedora-gcc 1.7.0 96.83 ERROR
r-devel-macos-x86_64-clang 1.7.0 77.55 ERROR
r-devel-windows-ix86+x86_64 1.7.0 27.00 137.00 164.00 ERROR
r-patched-linux-x86_64 1.7.0 5.60 43.29 48.90 OK
r-patched-solaris-sparc 1.7.0 609.40 OK
r-patched-solaris-x86 1.7.0 130.00 OK
r-release-linux-x86_64 1.7.0 5.68 43.61 49.29 OK
r-release-osx-x86_64-mavericks 1.7.0 OK
r-release-windows-ix86+x86_64 1.7.0 43.00 131.00 174.00 OK
r-oldrel-windows-ix86+x86_64 1.7.0 24.00 164.00 188.00 OK

Memtest notes: valgrind

Check Details

Version: 1.7.0
Check: files in ‘vignettes’
Result: WARN
    Files in the 'vignettes' directory newer than all files in 'inst/doc':
     ‘refGenome.Rnw’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.7.0
Check: tests
Result: ERROR
    Running the tests in ‘tests/test_overlap_juncs.r’ failed.
    Last 13 lines of output:
     >
     >
     > ## 1 2 3 4 5 6 7 ##
     > qry<-data.frame(id = 1:7, seqid = "1",
     + lstart = c(10100L, 11800L, 12220L, 12220L, 12220L, 32000L, 40000L),
     + lend = c(10100L, 12000L, 12225L, 12227L, 12227L, 32100L, 40100L),
     + rstart = c(10200L, 12200L, 12057L, 12613L, 12650L, 32200L, 40200L),
     + rend = c(10300L, 12250L, 12179L, 12620L, 12700L, 32300L, 40300L))
     > ## 1 2 3 4 5 6 7 ##
     >
     >
     > # C)
     > res<-overlapJuncs(qry,junc)
     Error: could not find function "overlapJuncs"
     Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 1.7.0
Check: running tests for arch ‘i386’
Result: ERROR
    Running the tests in 'tests/test_overlap_juncs.r' failed.
    Last 13 lines of output:
     >
     >
     > ## 1 2 3 4 5 6 7 ##
     > qry<-data.frame(id = 1:7, seqid = "1",
     + lstart = c(10100L, 11800L, 12220L, 12220L, 12220L, 32000L, 40000L),
     + lend = c(10100L, 12000L, 12225L, 12227L, 12227L, 32100L, 40100L),
     + rstart = c(10200L, 12200L, 12057L, 12613L, 12650L, 32200L, 40200L),
     + rend = c(10300L, 12250L, 12179L, 12620L, 12700L, 32300L, 40300L))
     > ## 1 2 3 4 5 6 7 ##
     >
     >
     > # C)
     > res<-overlapJuncs(qry,junc)
     Error: could not find function "overlapJuncs"
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.7.0
Check: running tests for arch ‘x64’
Result: ERROR
    Running the tests in 'tests/test_overlap_juncs.r' failed.
    Last 13 lines of output:
     >
     >
     > ## 1 2 3 4 5 6 7 ##
     > qry<-data.frame(id = 1:7, seqid = "1",
     + lstart = c(10100L, 11800L, 12220L, 12220L, 12220L, 32000L, 40000L),
     + lend = c(10100L, 12000L, 12225L, 12227L, 12227L, 32100L, 40100L),
     + rstart = c(10200L, 12200L, 12057L, 12613L, 12650L, 32200L, 40200L),
     + rend = c(10300L, 12250L, 12179L, 12620L, 12700L, 32300L, 40300L))
     > ## 1 2 3 4 5 6 7 ##
     >
     >
     > # C)
     > res<-overlapJuncs(qry,junc)
     Error: could not find function "overlapJuncs"
     Execution halted
Flavor: r-devel-windows-ix86+x86_64