CRAN Package Check Results for Package rgp

Last updated on 2015-08-30 12:47:26.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4-1 4.40 25.43 29.83 NOTE
r-devel-linux-x86_64-debian-gcc 0.4-1 5.86 22.84 28.69 NOTE
r-devel-linux-x86_64-fedora-clang 0.4-1 54.60 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4-1 50.35 NOTE
r-devel-osx-x86_64-clang 0.4-1 38.78 NOTE
r-devel-windows-ix86+x86_64 0.4-1 34.00 50.00 84.00 NOTE
r-patched-linux-x86_64 0.4-1 5.94 26.20 32.14 NOTE
r-patched-solaris-sparc 0.4-1 373.00 NOTE
r-patched-solaris-x86 0.4-1 83.40 NOTE
r-release-linux-x86_64 0.4-1 6.05 25.54 31.59 NOTE
r-release-osx-x86_64-mavericks 0.4-1 NOTE
r-release-windows-ix86+x86_64 0.4-1 31.00 68.00 99.00 NOTE
r-oldrel-windows-ix86+x86_64 0.4-1 35.00 57.00 92.00 NOTE

Check Details

Version: 0.4-1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘rrules’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.4-1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘igraph’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4-1
Check: R code for possible problems
Result: NOTE
    .onAttach: no visible global function definition for ‘sessionInfo’
    .onLoad : <anonymous>: no visible global function definition for
     ‘rnorm’
    crossoverexpr: no visible global function definition for ‘runif’
    crossoverexprTwoPoint: no visible global function definition for
     ‘runif’
    crossoverexprTyped: no visible global function definition for ‘runif’
    customDist: no visible global function definition for ‘as.dist’
    dataDrivenGeneticProgramming: no visible global function definition for
     ‘model.frame’
    dataDrivenGeneticProgramming: no visible global function definition for
     ‘terms’
    embedDataFrame : <anonymous>: no visible global function definition for
     ‘embed’
    exprToIgraph: no visible global function definition for ‘graph’
    exprToIgraph: no visible global function definition for ‘V’
    exprToIgraph: no visible global function definition for ‘V<-’
    makeAgeFitnessComplexityParetoGpSearchHeuristic : <anonymous>: no
     visible global function definition for ‘runif’
    makeAgeFitnessComplexityParetoGpSearchHeuristic : <anonymous> :
     <anonymous>: no visible global function definition for ‘runif’
    makeArchiveBasedParetoTournamentSearchHeuristic : <anonymous>: no
     visible global function definition for ‘runif’
    makeFitnessDistributionRestartCondition : stopCondition: no visible
     global function definition for ‘sd’
    makeFitnessStagnationRestartCondition : stopCondition: no visible
     global function definition for ‘sd’
    makeHierarchicalClusterFunction : <anonymous>: no visible global
     function definition for ‘cutree’
    makeHierarchicalClusterFunction : <anonymous>: no visible global
     function definition for ‘hclust’
    makeRegressionFitnessFunction: no visible global function definition
     for ‘na.omit’
    makeRegressionFitnessFunction: no visible global function definition
     for ‘terms’
    makeTinyGpSearchHeuristic : <anonymous>: no visible global function
     definition for ‘runif’
    multiNicheGeneticProgramming: no visible binding for global variable
     ‘sfClusterApplyLB’
    multiNicheGeneticProgramming: no visible binding for global variable
     ‘sfExport’
    multiNicheSymbolicRegression: no visible binding for global variable
     ‘sfClusterApplyLB’
    multiNicheSymbolicRegression: no visible binding for global variable
     ‘sfExport’
    multiNicheSymbolicRegression: no visible global function definition for
     ‘model.frame’
    multiNicheSymbolicRegression: no visible global function definition for
     ‘terms’
    mutateChangeLabel : mutateExpressionChangeLabel: no visible global
     function definition for ‘runif’
    mutateChangeLabel : mutateExpressionChangeLabel: no visible global
     function definition for ‘rnorm’
    mutateChangeLabel : mutateExpressionChangeLabel: no visible global
     function definition for ‘rbinom’
    mutateDeleteSubtree : mutateExpressionDeleteSubtree: no visible global
     function definition for ‘runif’
    mutateFunc : mutatefuncexpr: no visible global function definition for
     ‘runif’
    mutateFuncTyped : mutatefuncexprTyped: no visible global function
     definition for ‘runif’
    mutateInsertSubtree : mutateExpressionInsertSubtree: no visible global
     function definition for ‘runif’
    mutateNumericConst : mutateconstexpr: no visible global function
     definition for ‘runif’
    mutateNumericConst : mutateconstexpr: no visible global function
     definition for ‘rnorm’
    mutateNumericConstTyped : mutateconstexprTyped: no visible global
     function definition for ‘runif’
    mutateNumericConstTyped : mutateconstexprTyped: no visible global
     function definition for ‘rnorm’
    mutateSubtree : mutatesubtreeexpr: no visible global function
     definition for ‘runif’
    mutateSubtreeTyped : mutatesubtreeexprTyped: no visible global function
     definition for ‘runif’
    nondeterministicRanking : indexPmf: no visible global function
     definition for ‘runif’
    normalizedDesign: no visible global function definition for ‘runif’
    normalizedDesign: no visible global function definition for ‘dist’
    paretoFrontKneeIndex: no visible global function definition for
     ‘na.omit’
    paretoFrontKneeIndex: no visible global function definition for ‘dist’
    plotFunction3d: no visible global function definition for ‘gray.colors’
    plotFunction3d: no visible global function definition for ‘persp’
    plotFunctions: no visible global function definition for ‘par’
    plotFunctions: no visible global function definition for ‘matplot’
    plotFunctions: no visible global function definition for ‘legend’
    plotParetoFront: no visible global function definition for ‘colorRamp’
    plotParetoFront: no visible global function definition for ‘rgb’
    plotParetoFront: no visible global function definition for ‘plot’
    plotParetoFront: no visible global function definition for ‘points’
    plotPopulationFitnessComplexity: no visible global function definition
     for ‘quantile’
    plotPopulationFitnessComplexity: no visible global function definition
     for ‘IQR’
    plotPopulationFitnessComplexity: no visible global function definition
     for ‘plot’
    plotPopulationFitnessComplexity: no visible global function definition
     for ‘text’
    predict.symbolicRegressionModel: no visible global function definition
     for ‘na.omit’
    predict.symbolicRegressionModel: no visible global function definition
     for ‘terms’
    r_ssse: no visible global function definition for ‘cov’
    r_ssse: no visible global function definition for ‘var’
    randchild: no visible global function definition for ‘runif’
    randexprGrow: no visible global function definition for ‘runif’
    randexprTypedGrow: no visible global function definition for ‘runif’
    randfuncRampedHalfAndHalf: no visible global function definition for
     ‘runif’
    randfuncTypedRampedHalfAndHalf: no visible global function definition
     for ‘runif’
    randomIndex: no visible global function definition for ‘runif’
    randsubtree: no visible global function definition for ‘runif’
    randterminalTyped: no visible global function definition for ‘runif’
    seSymbolic: no visible global function definition for ‘integrate’
    Undefined global functions or variables:
     IQR V V<- as.dist colorRamp cov cutree dist embed graph gray.colors
     hclust integrate legend matplot model.frame na.omit par persp plot
     points quantile rbinom rgb rnorm runif sd sessionInfo
     sfClusterApplyLB sfExport terms text var
    Consider adding
     importFrom("grDevices", "colorRamp", "gray.colors", "rgb")
     importFrom("graphics", "legend", "matplot", "par", "persp", "plot",
     "points", "text")
     importFrom("stats", "IQR", "as.dist", "cov", "cutree", "dist", "embed",
     "hclust", "integrate", "model.frame", "na.omit", "quantile",
     "rbinom", "rnorm", "runif", "sd", "terms", "var")
     importFrom("utils", "sessionInfo")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.4-1
Check: R code for possible problems
Result: NOTE
    exprToIgraph: no visible global function definition for ‘graph’
    exprToIgraph: no visible global function definition for ‘V’
    exprToIgraph: no visible global function definition for ‘V<-’
    multiNicheGeneticProgramming: no visible binding for global variable
     ‘sfClusterApplyLB’
    multiNicheGeneticProgramming: no visible binding for global variable
     ‘sfExport’
    multiNicheSymbolicRegression: no visible binding for global variable
     ‘sfClusterApplyLB’
    multiNicheSymbolicRegression: no visible binding for global variable
     ‘sfExport’
    Undefined global functions or variables:
     V V<- graph sfClusterApplyLB sfExport
Flavor: r-devel-osx-x86_64-clang

Version: 0.4-1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    ype1/public/amsfonts/cm/cmr9.pfb><d:/Compiler/texmf/fonts/type1/public/amsfonts
    /cm/cmsltt10.pfb><d:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmss10.pfb><
    d:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmss8.pfb><d:/Compiler/texmf/f
    onts/type1/public/amsfonts/cm/cmss9.pfb><d:/Compiler/texmf/fonts/type1/public/a
    msfonts/cm/cmsy10.pfb><d:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmti10.
    pfb><d:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmti12.pfb><d:/Compiler/t
    exmf/fonts/type1/public/amsfonts/cm/cmtt10.pfb><d:/Compiler/texmf/fonts/type1/p
    ublic/amsfonts/cm/cmtt8.pfb><d:/Compiler/texmf/fonts/type1/public/mathpazo/fplm
    ri.pfb><d:/Compiler/texmf/fonts/type1/public/cm-super/sfrm0900.pfb><d:/Compiler
    /texmf/fonts/type1/public/cm-super/sfrm1000.pfb><d:/Compiler/texmf/fonts/type1/
    urw/palatino/uplr8a.pfb><d:/Compiler/texmf/fonts/type1/urw/palatino/uplri8a.pfb
    >
    Output written on rgp_introduction.pdf (16 pages, 431311 bytes).
    Transcript written on rgp_introduction.log.
    libpng warning: iCCP: known incorrect sRGB profile
    "D:/RCompile/recent/R/bin/Rscript" -e "tools::compactPDF('rgp_introduction.pdf', gs_quality='ebook')"
     compacted 'rgp_introduction.pdf' from 421Kb to 205Kb
    rm -f Rplots.pdf
    rm: cannot remove 'Rplots.pdf': Device or resource busy
    make[1]: *** [pdf] Error 1
    make[1]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/3.3/rgp.Rcheck/vign_test/rgp/vignettes'
    Warning: running command 'make' had status 2
    Error in buildVignettes(dir = "d:/Rcompile/CRANpkg/local/3.3/rgp.Rcheck/vign_test/rgp") :
     running 'make' failed
    Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 0.4-1
Check: R code for possible problems
Result: NOTE
    exprToIgraph: no visible global function definition for ‘graph’
    exprToIgraph: no visible global function definition for ‘V’
    exprToIgraph: no visible global function definition for ‘V<-’
    multiNicheGeneticProgramming: no visible binding for global variable
     ‘sfClusterApplyLB’
    multiNicheGeneticProgramming: no visible binding for global variable
     ‘sfExport’
    multiNicheSymbolicRegression: no visible binding for global variable
     ‘sfClusterApplyLB’
    multiNicheSymbolicRegression: no visible binding for global variable
     ‘sfExport’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4-1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    ype1/public/amsfonts/cm/cmr9.pfb><d:/Compiler/texmf/fonts/type1/public/amsfonts
    /cm/cmsltt10.pfb><d:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmss10.pfb><
    d:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmss8.pfb><d:/Compiler/texmf/f
    onts/type1/public/amsfonts/cm/cmss9.pfb><d:/Compiler/texmf/fonts/type1/public/a
    msfonts/cm/cmsy10.pfb><d:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmti10.
    pfb><d:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmti12.pfb><d:/Compiler/t
    exmf/fonts/type1/public/amsfonts/cm/cmtt10.pfb><d:/Compiler/texmf/fonts/type1/p
    ublic/amsfonts/cm/cmtt8.pfb><d:/Compiler/texmf/fonts/type1/public/mathpazo/fplm
    ri.pfb><d:/Compiler/texmf/fonts/type1/public/cm-super/sfrm0900.pfb><d:/Compiler
    /texmf/fonts/type1/public/cm-super/sfrm1000.pfb><d:/Compiler/texmf/fonts/type1/
    urw/palatino/uplr8a.pfb><d:/Compiler/texmf/fonts/type1/urw/palatino/uplri8a.pfb
    >
    Output written on rgp_introduction.pdf (16 pages, 431311 bytes).
    Transcript written on rgp_introduction.log.
    libpng warning: iCCP: known incorrect sRGB profile
    "D:/RCompile/recent/R-32~1.2/bin/Rscript" -e "tools::compactPDF('rgp_introduction.pdf', gs_quality='ebook')"
     compacted 'rgp_introduction.pdf' from 421Kb to 205Kb
    rm -f Rplots.pdf
    rm: cannot remove 'Rplots.pdf': Device or resource busy
    make[1]: *** [pdf] Error 1
    make[1]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/3.2/rgp.Rcheck/vign_test/rgp/vignettes'
    Warning: running command 'make' had status 2
    Error in buildVignettes(dir = "d:/Rcompile/CRANpkg/local/3.2/rgp.Rcheck/vign_test/rgp") :
     running 'make' failed
    Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 0.4-1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    ype1/public/amsfonts/cm/cmr9.pfb><d:/Compiler/texmf/fonts/type1/public/amsfonts
    /cm/cmsltt10.pfb><d:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmss10.pfb><
    d:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmss8.pfb><d:/Compiler/texmf/f
    onts/type1/public/amsfonts/cm/cmss9.pfb><d:/Compiler/texmf/fonts/type1/public/a
    msfonts/cm/cmsy10.pfb><d:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmti10.
    pfb><d:/Compiler/texmf/fonts/type1/public/amsfonts/cm/cmti12.pfb><d:/Compiler/t
    exmf/fonts/type1/public/amsfonts/cm/cmtt10.pfb><d:/Compiler/texmf/fonts/type1/p
    ublic/amsfonts/cm/cmtt8.pfb><d:/Compiler/texmf/fonts/type1/public/mathpazo/fplm
    ri.pfb><d:/Compiler/texmf/fonts/type1/public/cm-super/sfrm0900.pfb><d:/Compiler
    /texmf/fonts/type1/public/cm-super/sfrm1000.pfb><d:/Compiler/texmf/fonts/type1/
    urw/palatino/uplr8a.pfb><d:/Compiler/texmf/fonts/type1/urw/palatino/uplri8a.pfb
    >
    Output written on rgp_introduction.pdf (16 pages, 431311 bytes).
    Transcript written on rgp_introduction.log.
    libpng warning: iCCP: known incorrect sRGB profile
    "D:/RCompile/recent/R-31~1.3/bin/Rscript" -e "tools::compactPDF('rgp_introduction.pdf', gs_quality='ebook')"
     compacted 'rgp_introduction.pdf' from 421Kb to 205Kb
    rm -f Rplots.pdf
    rm: cannot remove 'Rplots.pdf': Device or resource busy
    make[1]: *** [pdf] Error 1
    make[1]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/3.1/rgp.Rcheck/vign_test/rgp/vignettes'
    Warning: running command 'make' had status 2
    Error in buildVignettes(dir = "d:/Rcompile/CRANpkg/local/3.1/rgp.Rcheck/vign_test/rgp") :
     running 'make' failed
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64