CRAN Package Check Results for Package rlme

Last updated on 2015-08-29 20:48:15.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4 17.28 46.48 63.76 ERROR
r-devel-linux-x86_64-debian-gcc 0.4 20.07 46.88 66.95 ERROR
r-devel-linux-x86_64-fedora-clang 0.4 138.75 ERROR
r-devel-linux-x86_64-fedora-gcc 0.4 132.63 ERROR
r-devel-osx-x86_64-clang 0.4 100.01 ERROR
r-devel-windows-ix86+x86_64 0.4 82.00 109.00 191.00 ERROR
r-patched-linux-x86_64 0.4 19.28 48.23 67.51 ERROR
r-patched-solaris-sparc 0.4 805.50 ERROR
r-patched-solaris-x86 0.4 175.90 ERROR
r-release-linux-x86_64 0.4 19.56 50.15 69.71 ERROR
r-release-osx-x86_64-mavericks 0.4 OK
r-release-windows-ix86+x86_64 0.4 82.00 117.00 199.00 ERROR
r-oldrel-windows-ix86+x86_64 0.4 82.00 134.00 216.00 ERROR

Check Details

Version: 0.4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.rlme summary.rlme
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.4
Check: R code for possible problems
Result: NOTE
    GEER_est: no visible global function definition for ‘median’
    GEER_est2: no visible global function definition for ‘median’
    LM_est: no visible global function definition for ‘as.formula’
    LM_est: no visible global function definition for ‘residuals’
    LM_est2: no visible global function definition for ‘as.formula’
    LM_est2: no visible global function definition for ‘residuals’
    blwts: no visible global function definition for ‘qchisq’
    blwts: no visible global function definition for ‘mad’
    diffwls: no visible global function definition for ‘lsfit’
    droptest: no visible global function definition for ‘pf’
    errdist: no visible global function definition for ‘rbinom’
    errdist: no visible global function definition for ‘rnorm’
    fitdiag: no visible global function definition for ‘lsfit’
    getgrstplot: no visible global function definition for ‘par’
    getgrstplot: no visible global function definition for ‘plot’
    getgrstplot: no visible global function definition for ‘abline’
    getgrstplot: no visible global function definition for ‘qqnorm’
    getgrstplot: no visible global function definition for ‘qqline’
    getlmestplot: no visible global function definition for ‘par’
    getlmestplot: no visible global function definition for ‘plot’
    getlmestplot: no visible global function definition for ‘abline’
    getlmestplot: no visible global function definition for ‘qqnorm’
    getlmestplot: no visible global function definition for ‘qqline’
    grwts: no visible global function definition for ‘qchisq’
    hbrwts: no visible global function definition for ‘qchisq’
    hbrwts: no visible global function definition for ‘mad’
    hbrwts: no visible global function definition for ‘median’
    hbrwts_gr: no visible global function definition for ‘mahalanobis’
    hbrwts_gr: no visible global function definition for ‘qchisq’
    hbrwts_gr: no visible global function definition for ‘mad’
    hbrwts_gr: no visible global function definition for ‘median’
    lmr: no visible global function definition for ‘as.formula’
    lmr: no visible global function definition for ‘terms’
    minimize_dispersion: no visible global function definition for ‘optim’
    minimize_dispersion: no visible global function definition for ‘median’
    mycov.rob: no visible global function definition for ‘var’
    mycov.rob: no visible binding for global variable ‘IQR’
    mycov.rob: no visible global function definition for ‘qchisq’
    mycov.rob: no visible global function definition for ‘quantile’
    old.wilcoxontau: no visible global function definition for ‘quantile’
    old.wilcoxontau: no visible global function definition for ‘median’
    old.wilcoxontau: no visible global function definition for ‘mad’
    onesampwil: no visible global function definition for ‘pnorm’
    onesampwil: no visible global function definition for ‘median’
    onesampwil: no visible global function definition for ‘qnorm’
    onesampwil: no visible global function definition for ‘boxplot’
    onesampwil: no visible global function definition for ‘title’
    plotfitdiag: no visible global function definition for ‘plot’
    plotfitdiag: no visible global function definition for ‘points’
    plotfitdiag: no visible global function definition for ‘abline’
    rhosch: no visible global function definition for ‘cor’
    rhosch: no visible global function definition for ‘sd’
    rhosect: no visible global function definition for ‘cor’
    rhosect: no visible global function definition for ‘sd’
    rlme: no visible global function definition for ‘as.formula’
    rlme: no visible global function definition for ‘terms’
    rlme: no visible global function definition for ‘tail’
    rlme: no visible global function definition for ‘aggregate’
    rlme: no visible global function definition for ‘pnorm’
    rpr: no visible global function definition for ‘tail’
    rprmeddis: no visible global function definition for ‘median’
    rprmeddis: no visible global function definition for ‘mad’
    rprmeddis: no visible global function definition for ‘sd’
    rprmeddis2: no visible global function definition for ‘median’
    rprmeddis2: no visible global function definition for ‘mad’
    schdist: no visible global function definition for ‘rbinom’
    schdist: no visible global function definition for ‘rnorm’
    sec_sch_vec: no visible global function definition for ‘aggregate’
    secdist: no visible global function definition for ‘rbinom’
    secdist: no visible global function definition for ‘rnorm’
    stanresid: no visible global function definition for ‘mad’
    stanresidgr: no visible global function definition for ‘mad’
    studres.gr: no visible global function definition for ‘mad’
    studres.hbr: no visible global function definition for ‘mad’
    studres.hbr: no visible global function definition for ‘var’
    taustar: no visible global function definition for ‘qnorm’
    twonestgen: no visible global function definition for ‘rbinom’
    twonestgen: no visible global function definition for ‘rnorm’
    varcov.hbr: no visible global function definition for ‘var’
    wald: no visible global function definition for ‘pf’
    wilcoxontau: no visible global function definition for ‘quantile’
    wilcoxontau: no visible global function definition for ‘median’
    wilcoxontau: no visible global function definition for ‘mad’
    wilcoxontau.ww: no visible global function definition for ‘quantile’
    wilcoxontau.ww: no visible global function definition for ‘median’
    wilcoxontau.ww: no visible global function definition for ‘mad’
    wwest: no visible global function definition for ‘pt’
    wwest: no visible global function definition for ‘par’
    wwest: no visible global function definition for ‘plot’
    wwest: no visible global function definition for ‘hist’
    wwest: no visible global function definition for ‘abline’
    wwest: no visible global function definition for ‘qqnorm’
    wwest: no visible global function definition for ‘qqline’
    wwfit: no visible global function definition for ‘median’
    Undefined global functions or variables:
     IQR abline aggregate as.formula boxplot cor hist lsfit mad
     mahalanobis median optim par pf plot pnorm points pt qchisq qnorm
     qqline qqnorm quantile rbinom residuals rnorm sd tail terms title var
    Consider adding
     importFrom("graphics", "abline", "boxplot", "hist", "par", "plot",
     "points", "title")
     importFrom("stats", "IQR", "aggregate", "as.formula", "cor", "lsfit",
     "mad", "mahalanobis", "median", "optim", "pf", "pnorm",
     "pt", "qchisq", "qnorm", "qqline", "qqnorm", "quantile",
     "rbinom", "residuals", "rnorm", "sd", "terms", "var")
     importFrom("utils", "tail")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.4
Check: examples
Result: ERROR
    Running examples in ‘rlme-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: compare.fits
    > ### Title: Compare Fits
    > ### Aliases: compare.fits
    > ### Keywords: models
    >
    > ### ** Examples
    >
    >
    > data(schools)
    > model = y ~ 1 + sex + age + (1 | region) + (1 | region:school)
    >
    > # Extract covariants into matrix
    > cov = as.matrix(data.frame(schools[,"sex"], schools[,"age"]))
    >
    > # Fit the models using each method
    > reml.fit = rlme(model, schools, method="reml")
    Error in stri_extract_all_regex(string, pattern, simplify = simplify, :
     Incorrectly nested parentheses in regexp pattern. (U_REGEX_MISMATCHED_PAREN)
    Calls: rlme -> str_extract_all -> stri_extract_all_regex -> .Call
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.4
Check: tests
Result: ERROR
    Running the tests in ‘tests/test-all.R’ failed.
    Last 13 lines of output:
    
     Type 'demo()' for some demos, 'help()' for on-line help, or
     'help.start()' for an HTML browser interface to help.
     Type 'q()' to quit R.
    
     > library(testthat)
     >
     > test_check("rlme")
     Loading required package: rlme
     Error in stri_extract_all_regex(string, pattern, simplify = simplify, :
     Incorrectly nested parentheses in regexp pattern. (U_REGEX_MISMATCHED_PAREN)
     Calls: test_check ... rlme -> str_extract_all -> stri_extract_all_regex -> .Call
     Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.4
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'rlme-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: compare.fits
    > ### Title: Compare Fits
    > ### Aliases: compare.fits
    > ### Keywords: models
    >
    > ### ** Examples
    >
    >
    > data(schools)
    > model = y ~ 1 + sex + age + (1 | region) + (1 | region:school)
    >
    > # Extract covariants into matrix
    > cov = as.matrix(data.frame(schools[,"sex"], schools[,"age"]))
    >
    > # Fit the models using each method
    > reml.fit = rlme(model, schools, method="reml")
    Error in stri_extract_all_regex(string, pattern, simplify = simplify, :
     Incorrectly nested parentheses in regexp pattern. (U_REGEX_MISMATCHED_PAREN)
    Calls: rlme -> str_extract_all -> stri_extract_all_regex -> .Call
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'rlme-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: compare.fits
    > ### Title: Compare Fits
    > ### Aliases: compare.fits
    > ### Keywords: models
    >
    > ### ** Examples
    >
    >
    > data(schools)
    > model = y ~ 1 + sex + age + (1 | region) + (1 | region:school)
    >
    > # Extract covariants into matrix
    > cov = as.matrix(data.frame(schools[,"sex"], schools[,"age"]))
    >
    > # Fit the models using each method
    > reml.fit = rlme(model, schools, method="reml")
    Error in stri_extract_all_regex(string, pattern, simplify = simplify, :
     Incorrectly nested parentheses in regexp pattern. (U_REGEX_MISMATCHED_PAREN)
    Calls: rlme -> str_extract_all -> stri_extract_all_regex -> .Call
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4
Check: running tests for arch ‘i386’
Result: ERROR
    Running the tests in 'tests/test-all.R' failed.
    Last 13 lines of output:
    
     Type 'demo()' for some demos, 'help()' for on-line help, or
     'help.start()' for an HTML browser interface to help.
     Type 'q()' to quit R.
    
     > library(testthat)
     >
     > test_check("rlme")
     Loading required package: rlme
     Error in stri_extract_all_regex(string, pattern, simplify = simplify, :
     Incorrectly nested parentheses in regexp pattern. (U_REGEX_MISMATCHED_PAREN)
     Calls: test_check ... rlme -> str_extract_all -> stri_extract_all_regex -> .Call
     Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 0.4
Check: running tests for arch ‘x64’
Result: ERROR
    Running the tests in 'tests/test-all.R' failed.
    Last 13 lines of output:
    
     Type 'demo()' for some demos, 'help()' for on-line help, or
     'help.start()' for an HTML browser interface to help.
     Type 'q()' to quit R.
    
     > library(testthat)
     >
     > test_check("rlme")
     Loading required package: rlme
     Error in stri_extract_all_regex(string, pattern, simplify = simplify, :
     Incorrectly nested parentheses in regexp pattern. (U_REGEX_MISMATCHED_PAREN)
     Calls: test_check ... rlme -> str_extract_all -> stri_extract_all_regex -> .Call
     Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64