CRAN Package Check Results for Package rms

Last updated on 2016-09-25 23:47:03.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 4.5-0 6.84 141.31 148.14 ERROR
r-devel-linux-x86_64-debian-gcc 4.5-0 6.63 138.09 144.72 ERROR
r-devel-linux-x86_64-fedora-clang 4.5-0 280.97 ERROR
r-devel-linux-x86_64-fedora-gcc 4.5-0 269.47 ERROR
r-devel-macos-x86_64-clang 4.5-0 215.80 ERROR
r-devel-windows-ix86+x86_64 4.5-0 19.00 407.00 426.00 ERROR
r-patched-linux-x86_64 4.5-0 7.39 123.15 130.55 OK
r-patched-solaris-sparc 4.5-0 1504.70 OK
r-patched-solaris-x86 4.5-0 289.10 OK
r-release-linux-x86_64 4.5-0 6.94 128.62 135.56 OK
r-release-osx-x86_64-mavericks 4.5-0 NOTE
r-release-windows-ix86+x86_64 4.5-0 25.00 325.00 350.00 OK
r-oldrel-windows-ix86+x86_64 4.5-0 32.00 452.00 484.00 OK

Check Details

Version: 4.5-0
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: GNU Extension: Nonstandard type declaration REAL*8 at (1)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 4.5-0
Check: for unstated dependencies in ‘tests’
Result: WARN
    Warning: parse error in file ‘cphtdc.r’:
    164:3: unexpected ','
    163:
    164: Ok,
     ^
    'library' or 'require' calls not declared from:
     ‘gridExtra’ ‘mice’ ‘plyr’ ‘proftools’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 4.5-0
Check: tests
Result: ERROR
    Running the tests in ‘tests/cph4.r’ failed.
    Last 13 lines of output:
     > options(debug=TRUE)
     > set.seed(1)
     > n <- 100
     > x1 <- runif(n)
     > x2 <- runif(n)
     > x3 <- runif(n)
     > x4 <- sample(0:4, n, TRUE)
     > x5 <- ordered(sample(1:3, n, TRUE), levels=1:3, labels=c('I','II','III'))
     > S <- Surv(runif(n))
     > f <- cph(S ~ x1 + pol(x2, 2) + rcs(x3, 4) + scored(x4) + x5)
     Error in Design(eval.parent(m)) : Variable x5 is an ordered factor.
     You should set options(contrasts=c("contr.treatment", "contr.treatment"))
     or rms will not work properly.
     Calls: cph -> Design
     Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 4.5-0
Check: running tests for arch ‘i386’
Result: ERROR
    Running the tests in 'tests/cph4.r' failed.
    Last 13 lines of output:
     > options(debug=TRUE)
     > set.seed(1)
     > n <- 100
     > x1 <- runif(n)
     > x2 <- runif(n)
     > x3 <- runif(n)
     > x4 <- sample(0:4, n, TRUE)
     > x5 <- ordered(sample(1:3, n, TRUE), levels=1:3, labels=c('I','II','III'))
     > S <- Surv(runif(n))
     > f <- cph(S ~ x1 + pol(x2, 2) + rcs(x3, 4) + scored(x4) + x5)
     Error in Design(eval.parent(m)) : Variable x5 is an ordered factor.
     You should set options(contrasts=c("contr.treatment", "contr.treatment"))
     or rms will not work properly.
     Calls: cph -> Design
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 4.5-0
Check: running tests for arch ‘x64’
Result: ERROR
    Running the tests in 'tests/cph4.r' failed.
    Last 13 lines of output:
     > options(debug=TRUE)
     > set.seed(1)
     > n <- 100
     > x1 <- runif(n)
     > x2 <- runif(n)
     > x3 <- runif(n)
     > x4 <- sample(0:4, n, TRUE)
     > x5 <- ordered(sample(1:3, n, TRUE), levels=1:3, labels=c('I','II','III'))
     > S <- Surv(runif(n))
     > f <- cph(S ~ x1 + pol(x2, 2) + rcs(x3, 4) + scored(x4) + x5)
     Error in Design(eval.parent(m)) : Variable x5 is an ordered factor.
     You should set options(contrasts=c("contr.treatment", "contr.treatment"))
     or rms will not work properly.
     Calls: cph -> Design
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 4.5-0
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks