CRAN Package Check Results for Package rrBLUP

Last updated on 2015-08-30 04:48:39.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 4.3 0.55 12.99 13.54 NOTE
r-devel-linux-x86_64-debian-gcc 4.3 0.50 12.66 13.16 NOTE
r-devel-linux-x86_64-fedora-clang 4.3 25.21 NOTE
r-devel-linux-x86_64-fedora-gcc 4.3 24.84 NOTE
r-devel-osx-x86_64-clang 4.3 24.90 NOTE
r-devel-windows-ix86+x86_64 4.3 4.00 26.00 30.00 NOTE
r-patched-linux-x86_64 4.3 0.58 13.71 14.29 NOTE
r-patched-solaris-sparc 4.3 183.90 NOTE
r-patched-solaris-x86 4.3 39.10 NOTE
r-release-linux-x86_64 4.3 0.64 14.20 14.84 NOTE
r-release-osx-x86_64-mavericks 4.3 NOTE
r-release-windows-ix86+x86_64 4.3 2.00 25.00 27.00 NOTE
r-oldrel-windows-ix86+x86_64 4.3 4.00 24.00 28.00 NOTE

Check Details

Version: 4.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘parallel’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 4.3
Check: R code for possible problems
Result: NOTE
    A.mat: no visible global function definition for ‘cov’
    A.mat: no visible global function definition for ‘mclapply’
    GWAS : qvalue: no visible global function definition for
     ‘smooth.spline’
    GWAS : qvalue: no visible global function definition for ‘predict’
    GWAS : manhattan: no visible global function definition for ‘median’
    GWAS : manhattan: no visible global function definition for ‘points’
    GWAS : manhattan: no visible global function definition for
     ‘smooth.spline’
    GWAS : manhattan: no visible global function definition for ‘lines’
    GWAS : manhattan: no visible global function definition for ‘predict’
    GWAS : manhattan: no visible global function definition for ‘axis’
    GWAS : qq: no visible global function definition for ‘ppoints’
    GWAS : qq: no visible global function definition for ‘lines’
    GWAS : score.calc: no visible global function definition for ‘pbeta’
    GWAS: no visible global function definition for ‘model.matrix’
    GWAS: no visible global function definition for ‘par’
    GWAS: no visible global function definition for ‘mclapply’
    GWAS: no visible global function definition for ‘title’
    GWAS: no visible global function definition for ‘dev.cur’
    GWAS: no visible global function definition for ‘dev.next’
    GWAS: no visible global function definition for ‘dev.new’
    GWAS: no visible global function definition for ‘dev.set’
    kin.blup: no visible global function definition for ‘model.matrix’
    kin.blup: no visible global function definition for ‘mclapply’
    kinship.BLUP: no visible global function definition for ‘dist’
    kinship.BLUP: no visible global function definition for ‘mclapply’
    mixed.solve: no visible global function definition for ‘optimize’
    Undefined global functions or variables:
     axis cov dev.cur dev.new dev.next dev.set dist lines mclapply median
     model.matrix optimize par pbeta points ppoints predict smooth.spline
     title
    Consider adding
     importFrom("grDevices", "dev.cur", "dev.new", "dev.next", "dev.set")
     importFrom("graphics", "axis", "lines", "par", "points", "title")
     importFrom("stats", "cov", "dist", "median", "model.matrix",
     "optimize", "pbeta", "ppoints", "predict", "smooth.spline")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 4.3
Check: R code for possible problems
Result: NOTE
    A.mat: no visible global function definition for ‘mclapply’
    GWAS: no visible global function definition for ‘mclapply’
    kin.blup: no visible global function definition for ‘mclapply’
    kinship.BLUP: no visible global function definition for ‘mclapply’
    Undefined global functions or variables:
     mclapply
Flavor: r-devel-osx-x86_64-clang

Version: 4.3
Check: R code for possible problems
Result: NOTE
    A.mat: no visible global function definition for ‘mclapply’
    GWAS: no visible global function definition for ‘mclapply’
    kin.blup: no visible global function definition for ‘mclapply’
    kinship.BLUP: no visible global function definition for ‘mclapply’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64