CRAN Package Check Results for Package rsgcc

Last updated on 2014-10-02 17:48:21.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.6 6.72 66.37 73.08 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.6 6.57 65.54 72.10 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.6 172.01 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.6 163.81 NOTE
r-devel-osx-x86_64-clang 1.0.6 135.86 NOTE
r-devel-windows-ix86+x86_64 1.0.6 26.00 130.00 156.00 NOTE
r-patched-linux-x86_64 1.0.6 7.33 74.62 81.95 NOTE
r-patched-solaris-sparc 1.0.6 972.80 NOTE
r-patched-solaris-x86 1.0.6 246.00 NOTE
r-release-linux-ix86 1.0.6 9.32 95.42 104.75 NOTE
r-release-linux-x86_64 1.0.6 7.59 77.90 85.49 NOTE
r-release-osx-x86_64-mavericks 1.0.6 ERROR
r-release-osx-x86_64-snowleopard 1.0.6 ERROR
r-release-windows-ix86+x86_64 1.0.6 32.00 154.00 186.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0.6 34.00 154.00 188.00 NOTE

Check Details

Version: 1.0.6
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘biwt’ ‘cairoDevice’ ‘fBasics’ ‘gplots’ ‘gWidgets’ ‘gWidgetsRGtk2’
     ‘minerva’ ‘parmigene’ ‘stringr’ ‘snowfall’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 1.0.6
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘grDevices’ ‘snowfall’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘biwt’ ‘cairoDevice’ ‘fBasics’ ‘gWidgets’ ‘gWidgetsRGtk2’ ‘gplots’
     ‘minerva’ ‘parmigene’ ‘snowfall’ ‘stringr’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.6
Check: R code for possible problems
Result: NOTE
    .cor_all: no visible global function definition for ‘as.big.matrix’
    adjacencymatrix: no visible global function definition for
     ‘as.big.matrix’
    adjacencymatrix: no visible global function definition for ‘mine’
    adjacencymatrix: no visible global function definition for
     ‘knnmi.cross’
    adjacencymatrix: no visible global function definition for ‘knnmi.all’
    cor.matrix: no visible global function definition for ‘sfInit’
    cor.matrix: no visible global function definition for ‘sfCpus’
    cor.matrix: no visible global function definition for ‘sfApply’
    cor.matrix: no visible global function definition for ‘sfStop’
    cor.pair : getcor: no visible global function definition for ‘biwt.cor’
    gcc.heatmap: no visible global function definition for ‘invalid’
    rsgcc.gui : coverDecToHex: no visible global function definition for
     ‘.dec.to.hex’
    rsgcc.gui : coverDecToHex: no visible global function definition for
     ‘str_length’
    rsgcc.gui : coverDecToHex: no visible global function definition for
     ‘str_sub’
    rsgcc.gui : fileChoose: no visible global function definition for
     ‘gfile’
    rsgcc.gui : fileChoose: no visible global function definition for
     ‘str_sub’
    rsgcc.gui : fileChoose: no visible global function definition for
     ‘str_length’
    rsgcc.gui : visData: no visible global function definition for ‘svalue’
    rsgcc.gui : visData: no visible global function definition for
     ‘gwindow’
    rsgcc.gui : visData: no visible global function definition for ‘ggroup’
    rsgcc.gui : visData: no visible global function definition for ‘gtable’
    rsgcc.gui : updateHeatmapMax: no visible global function definition for
     ‘svalue’
    rsgcc.gui : updateHeatmapMean: no visible global function definition
     for ‘svalue’
    rsgcc.gui : updateHeatmapMin: no visible global function definition for
     ‘svalue’
    rsgcc.gui : saveData: no visible global function definition for ‘r2atr’
    rsgcc.gui : saveData: no visible global function definition for ‘r2gtr’
    rsgcc.gui : saveData: no visible global function definition for ‘r2cdt’
    rsgcc.gui: no visible global function definition for ‘gwindow’
    rsgcc.gui: no visible global function definition for ‘ggroup’
    rsgcc.gui: no visible global function definition for ‘gframe’
    rsgcc.gui: no visible global function definition for ‘gbutton’
    rsgcc.gui: no visible global function definition for ‘gcheckbox’
    rsgcc.gui : <anonymous>: no visible global function definition for
     ‘svalue’
    rsgcc.gui: no visible global function definition for ‘gedit’
    rsgcc.gui: no visible global function definition for ‘add’
    rsgcc.gui: no visible global function definition for ‘gradio’
    rsgcc.gui: no visible global function definition for ‘gcombobox’
    rsgcc.gui: no visible global function definition for ‘gslider’
    rsgcc.gui: no visible global function definition for ‘ggraphics’
    uniqueTissues: no visible global function definition for ‘str_sub’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.0.6
Check: compiled code
Result: NOTE
    File ‘rsgcc/libs/rsgcc.so’:
     Found ‘rand_r’, possibly from ‘rand_r’ (C)
     Object: ‘points.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.6
Check: compiled code
Result: NOTE
    File ‘rsgcc/libs/rsgcc.so’:
     Found ‘_rand_r’, possibly from ‘rand_r’ (C)
     Object: ‘points.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-clang

Version: 1.0.6
Check: R code for possible problems
Result: NOTE
    gcc.heatmap: no visible global function definition for ‘invalid’
Flavors: r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 1.0.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘ctc’
    
    Depends: includes the non-default packages:
     ‘biwt’ ‘cairoDevice’ ‘fBasics’ ‘gplots’ ‘gWidgets’ ‘gWidgetsRGtk2’
     ‘minerva’ ‘parmigene’ ‘stringr’ ‘snowfall’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-snowleopard

Version: 1.0.6
Check: R code for possible problems
Result: NOTE
    gcc.heatmap: no visible global function definition for ‘invalid’
    rsgcc.gui : saveData: no visible global function definition for ‘r2atr’
    rsgcc.gui : saveData: no visible global function definition for ‘r2gtr’
    rsgcc.gui : saveData: no visible global function definition for ‘r2cdt’
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.0.6
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘cairoDevice’ ‘gWidgetsRGtk2’
    
    Package suggested but not available for checking: ‘ctc’
    
    Depends: includes the non-default packages:
     ‘biwt’ ‘cairoDevice’ ‘fBasics’ ‘gplots’ ‘gWidgets’ ‘gWidgetsRGtk2’
     ‘minerva’ ‘parmigene’ ‘stringr’ ‘snowfall’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0.6
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64-snowleopard

Version: 1.0.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'bigmemory'
    
    Depends: includes the non-default packages:
     'biwt' 'cairoDevice' 'fBasics' 'gplots' 'gWidgets' 'gWidgetsRGtk2'
     'minerva' 'parmigene' 'stringr' 'snowfall'
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavor: r-release-windows-ix86+x86_64

Version: 1.0.6
Check: R code for possible problems
Result: NOTE
    .cor_all: no visible global function definition for 'as.big.matrix'
    adjacencymatrix: no visible global function definition for
     'as.big.matrix'
    gcc.heatmap: no visible global function definition for 'invalid'
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'bigmemory'
Flavor: r-oldrel-windows-ix86+x86_64