CRAN Package Check Results for Package rsgcc

Last updated on 2015-04-26 03:47:38.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.6 5.63 49.34 54.98 NOTE
r-devel-linux-x86_64-debian-gcc 1.0.6 5.51 47.62 53.13 NOTE
r-devel-linux-x86_64-fedora-clang 1.0.6 115.64 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.6 107.09 NOTE
r-devel-osx-x86_64-clang 1.0.6 100.46 NOTE
r-devel-windows-ix86+x86_64 1.0.6 21.00 105.00 126.00 NOTE
r-patched-linux-x86_64 1.0.6 5.49 48.43 53.92 NOTE
r-patched-solaris-sparc 1.0.6 674.40 NOTE
r-patched-solaris-x86 1.0.6 159.70 NOTE
r-release-linux-x86_64 1.0.6 5.43 47.56 52.99 NOTE
r-release-osx-x86_64-mavericks 1.0.6 ERROR
r-release-osx-x86_64-snowleopard 1.0.6 NOTE
r-release-windows-ix86+x86_64 1.0.6 21.00 109.00 130.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0.6 28.00 148.00 176.00 NOTE

Check Details

Version: 1.0.6
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     'biwt' 'cairoDevice' 'fBasics' 'gplots' 'gWidgets' 'gWidgetsRGtk2'
     'minerva' 'parmigene' 'stringr' 'snowfall'
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 1.0.6
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     'grDevices' 'snowfall'
     Please remove these calls from your code.
    'library' or 'require' call to 'ctc' in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Packages in Depends field not imported from:
     'biwt' 'cairoDevice' 'fBasics' 'gWidgets' 'gWidgetsRGtk2' 'gplots'
     'minerva' 'parmigene' 'snowfall' 'stringr'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.6
Check: R code for possible problems
Result: NOTE
    .cor_all: no visible global function definition for 'as.big.matrix'
    adjacencymatrix: no visible global function definition for
     'as.big.matrix'
    adjacencymatrix: no visible global function definition for 'mine'
    adjacencymatrix: no visible global function definition for
     'knnmi.cross'
    adjacencymatrix: no visible global function definition for 'knnmi.all'
    cor.matrix: no visible global function definition for 'sfInit'
    cor.matrix: no visible global function definition for 'sfCpus'
    cor.matrix: no visible global function definition for 'sfApply'
    cor.matrix: no visible global function definition for 'sfStop'
    cor.pair : getcor: no visible global function definition for 'biwt.cor'
    gcc.heatmap: no visible global function definition for 'invalid'
    rsgcc.gui : coverDecToHex: no visible global function definition for
     '.dec.to.hex'
    rsgcc.gui : coverDecToHex: no visible global function definition for
     'str_length'
    rsgcc.gui : coverDecToHex: no visible global function definition for
     'str_sub'
    rsgcc.gui : fileChoose: no visible global function definition for
     'gfile'
    rsgcc.gui : fileChoose: no visible global function definition for
     'str_sub'
    rsgcc.gui : fileChoose: no visible global function definition for
     'str_length'
    rsgcc.gui : visData: no visible global function definition for 'svalue'
    rsgcc.gui : visData: no visible global function definition for
     'gwindow'
    rsgcc.gui : visData: no visible global function definition for 'ggroup'
    rsgcc.gui : visData: no visible global function definition for 'gtable'
    rsgcc.gui : updateHeatmapMax: no visible global function definition for
     'svalue'
    rsgcc.gui : updateHeatmapMean: no visible global function definition
     for 'svalue'
    rsgcc.gui : updateHeatmapMin: no visible global function definition for
     'svalue'
    rsgcc.gui : saveData: no visible global function definition for 'r2atr'
    rsgcc.gui : saveData: no visible global function definition for 'r2gtr'
    rsgcc.gui : saveData: no visible global function definition for 'r2cdt'
    rsgcc.gui: no visible global function definition for 'gwindow'
    rsgcc.gui: no visible global function definition for 'ggroup'
    rsgcc.gui: no visible global function definition for 'gframe'
    rsgcc.gui: no visible global function definition for 'gbutton'
    rsgcc.gui: no visible global function definition for 'gcheckbox'
    rsgcc.gui : <anonymous>: no visible global function definition for
     'svalue'
    rsgcc.gui: no visible global function definition for 'gedit'
    rsgcc.gui: no visible global function definition for 'add'
    rsgcc.gui: no visible global function definition for 'gradio'
    rsgcc.gui: no visible global function definition for 'gcombobox'
    rsgcc.gui: no visible global function definition for 'gslider'
    rsgcc.gui: no visible global function definition for 'ggraphics'
    uniqueTissues: no visible global function definition for 'str_sub'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.6
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'bigmemory'
    
    Depends: includes the non-default packages:
     'biwt' 'cairoDevice' 'fBasics' 'gplots' 'gWidgets' 'gWidgetsRGtk2'
     'minerva' 'parmigene' 'stringr' 'snowfall'
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavor: r-oldrel-windows-ix86+x86_64