CRAN Package Check Results for Package runjags

Last updated on 2015-09-03 14:48:34.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.1-4 6.00 111.56 117.56 NOTE
r-devel-linux-x86_64-debian-gcc 2.0.1-4 5.72 110.27 115.98 NOTE
r-devel-linux-x86_64-fedora-clang 2.0.1-4 214.75 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0.1-4 191.41 NOTE
r-devel-osx-x86_64-clang 2.0.1-4 168.91 NOTE
r-devel-windows-ix86+x86_64 2.0.1-4 38.00 714.00 752.00 NOTE
r-patched-linux-x86_64 2.0.1-4 5.84 115.34 121.19 NOTE
r-patched-solaris-sparc 2.0.1-4 1674.00 NOTE
r-patched-solaris-x86 2.0.1-4 420.00 NOTE
r-release-linux-x86_64 2.0.1-4 5.80 115.72 121.53 NOTE
r-release-osx-x86_64-mavericks 2.0.1-4 OK
r-release-windows-ix86+x86_64 2.0.1-4 32.00 848.00 880.00 OK
r-oldrel-windows-ix86+x86_64 2.0.1-4 39.00 384.00 423.00 OK

Check Details

Version: 2.0.1-4
Check: R code for possible problems
Result: NOTE
    as.jags.runjags: no visible global function definition for
     ‘flush.console’
    as.jags.runjags: no visible global function definition for
     ‘capture.output’
    autoextend.JAGS: no visible global function definition for ‘na.omit’
    autoextend.jags: no visible global function definition for ‘na.omit’
    combine.MCMC: no visible global function definition for ‘start’
    combine.MCMC: no visible global function definition for ‘window’
    combine.mcmc: no visible global function definition for ‘start’
    combine.mcmc: no visible global function definition for ‘window’
    crosscorr.plot.lattice: no visible global function definition for
     ‘topo.colors’
    drop.k : inits: no visible binding for global variable ‘data’
    drop.k.JAGS : inits: no visible binding for global variable ‘data’
    drop.k.jags : inits: no visible binding for global variable ‘data’
    dynloadmodule: no visible global function definition for
     ‘packageVersion’
    extend.JAGS: no visible global function definition for ‘na.omit’
    extend.jags: no visible global function definition for ‘na.omit’
    findJAGS: no visible global function definition for ‘find’
    findJAGS: no visible global function definition for ‘na.omit’
    findjags: no visible global function definition for ‘find’
    findjags: no visible global function definition for ‘na.omit’
    getrunjagsmethod: no visible global function definition for
     ‘packageVersion’
    load.runJAGSmodule : intfun: no visible global function definition for
     ‘packageVersion’
    load.runjagsmodule : intfun: no visible global function definition for
     ‘packageVersion’
    matchvars: no visible global function definition for ‘na.omit’
    normalise.mcmcfun : <anonymous> : <anonymous>: no visible global
     function definition for ‘var’
    normalise.mcmcfun : <anonymous>: no visible global function definition
     for ‘var’
    plot.runjags: no visible binding for global variable ‘pdf’
    plot.runjagsplots: no visible global function definition for ‘dev.new’
    plot.runjagsplots: no visible global function definition for ‘dev.off’
    print.runjagsplots: no visible global function definition for ‘dev.new’
    print.runjagsplots: no visible global function definition for ‘dev.off’
    read.coda.subset: no visible global function definition for
     ‘read.table’
    run.JAGS.study: no visible global function definition for
     ‘flush.console’
    run.JAGS.study : FUN: no visible global function definition for
     ‘capture.output’
    run.JAGS.study : FUN: no visible global function definition for
     ‘flush.console’
    run.JAGS.study: no visible global function definition for
     ‘capture.output’
    run.jags.study: no visible global function definition for
     ‘flush.console’
    run.jags.study : FUN: no visible global function definition for
     ‘capture.output’
    run.jags.study : FUN: no visible global function definition for
     ‘flush.console’
    run.jags.study: no visible global function definition for
     ‘capture.output’
    runjags.interruptible: no visible global function definition for
     ‘flush.console’
    runjags.parallel: no visible global function definition for
     ‘flush.console’
    runjags.readin: no visible global function definition for ‘read.csv’
    runjags.readin: no visible global function definition for ‘read.table’
    runjags.rjags: no visible global function definition for
     ‘flush.console’
    runjags.rjags: no visible global function definition for ‘update’
    runjags.rjparallel: no visible global function definition for
     ‘capture.output’
    runjags.rjparallel : clfun: no visible global function definition for
     ‘packageVersion’
    runjags.rjparallel : clfun: no visible global function definition for
     ‘flush.console’
    runjags.rjparallel : clfun: no visible global function definition for
     ‘update’
    runjags.simple: no visible global function definition for
     ‘flush.console’
    runjags.snow: no visible global function definition for
     ‘capture.output’
    runjags.summaries: no visible binding for global variable ‘median’
    runjagsplots: no visible global function definition for ‘rainbow’
    runjagsplots: no visible global function definition for ‘quantile’
    runjagsplots: no visible global function definition for ‘acf’
    setup.JAGS: no visible global function definition for ‘na.omit’
    setup.jags: no visible global function definition for ‘na.omit’
    setup.jagsfile: no visible global function definition for ‘na.omit’
    setup.xgrid: no visible global function definition for ‘na.omit’
    setup.xgrid: no visible global function definition for ‘capture.output’
    summarise.jags.study : <anonymous>: no visible binding for global
     variable ‘var’
    summarise.jags.study : <anonymous>: no visible binding for global
     variable ‘median’
    tailf: no visible global function definition for ‘flush.console’
    template.JAGS: no visible global function definition for ‘as.formula’
    template.JAGS: no visible global function definition for ‘var’
    template.jags: no visible global function definition for ‘as.formula’
    template.jags: no visible global function definition for ‘var’
    timestring: no visible global function definition for ‘na.omit’
    versionmatch: no visible global function definition for
     ‘compareVersion’
    waitforxgridjob: no visible global function definition for
     ‘flush.console’
    write.JAGSfile: no visible global function definition for
     ‘capture.output’
    write.jagsfile: no visible global function definition for
     ‘capture.output’
    Undefined global functions or variables:
     acf as.formula capture.output compareVersion data dev.new dev.off
     find flush.console median na.omit packageVersion pdf quantile rainbow
     read.csv read.table start topo.colors update var window
    Consider adding
     importFrom("grDevices", "dev.new", "dev.off", "pdf", "rainbow",
     "topo.colors")
     importFrom("stats", "acf", "as.formula", "median", "na.omit",
     "quantile", "start", "update", "var", "window")
     importFrom("utils", "capture.output", "compareVersion", "data", "find",
     "flush.console", "packageVersion", "read.csv", "read.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.0.1-4
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running ‘texi2dvi’ on ‘UserGuide.tex’ failed.
    LaTeX errors:
    ! LaTeX Error: Unknown float option `l'.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64