CRAN Package Check Results for Package runjags

Last updated on 2015-07-03 23:47:51.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.1-4 6.02 114.57 120.58 NOTE
r-devel-linux-x86_64-debian-gcc 2.0.1-4 5.73 110.49 116.22 NOTE
r-devel-linux-x86_64-fedora-clang 2.0.1-4 203.73 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0.1-4 190.96 NOTE
r-devel-osx-x86_64-clang 2.0.1-4 164.12 NOTE
r-devel-windows-ix86+x86_64 2.0.1-4 50.00 446.00 496.00 NOTE
r-patched-linux-x86_64 2.0.1-4 6.02 116.10 122.13 OK
r-patched-solaris-sparc 2.0.1-4 1589.00 NOTE
r-patched-solaris-x86 2.0.1-4 422.70 NOTE
r-release-linux-x86_64 2.0.1-4 6.02 116.16 122.19 OK
r-release-osx-x86_64-mavericks 2.0.1-4 OK
r-release-windows-ix86+x86_64 2.0.1-4 32.00 455.00 487.00 OK
r-oldrel-windows-ix86+x86_64 2.0.1-4 26.00 395.00 421.00 OK

Check Details

Version: 2.0.1-4
Check: R code for possible problems
Result: NOTE
    as.jags.runjags: no visible global function definition for
     ‘flush.console’
    as.jags.runjags: no visible global function definition for
     ‘capture.output’
    autoextend.JAGS: no visible global function definition for ‘na.omit’
    autoextend.jags: no visible global function definition for ‘na.omit’
    combine.MCMC: no visible global function definition for ‘start’
    combine.MCMC: no visible global function definition for ‘window’
    combine.mcmc: no visible global function definition for ‘start’
    combine.mcmc: no visible global function definition for ‘window’
    crosscorr.plot.lattice: no visible global function definition for
     ‘topo.colors’
    drop.k : inits: no visible binding for global variable ‘data’
    drop.k.JAGS : inits: no visible binding for global variable ‘data’
    drop.k.jags : inits: no visible binding for global variable ‘data’
    dynloadmodule: no visible global function definition for
     ‘packageVersion’
    extend.JAGS: no visible global function definition for ‘na.omit’
    extend.jags: no visible global function definition for ‘na.omit’
    findJAGS: no visible global function definition for ‘find’
    findJAGS: no visible global function definition for ‘na.omit’
    findjags: no visible global function definition for ‘find’
    findjags: no visible global function definition for ‘na.omit’
    getrunjagsmethod: no visible global function definition for
     ‘packageVersion’
    load.runJAGSmodule : intfun: no visible global function definition for
     ‘packageVersion’
    load.runjagsmodule : intfun: no visible global function definition for
     ‘packageVersion’
    matchvars: no visible global function definition for ‘na.omit’
    normalise.mcmcfun : <anonymous> : <anonymous>: no visible global
     function definition for ‘var’
    normalise.mcmcfun : <anonymous>: no visible global function definition
     for ‘var’
    plot.runjags: no visible binding for global variable ‘pdf’
    plot.runjagsplots: no visible global function definition for ‘dev.new’
    plot.runjagsplots: no visible global function definition for ‘dev.off’
    print.runjagsplots: no visible global function definition for ‘dev.new’
    print.runjagsplots: no visible global function definition for ‘dev.off’
    read.coda.subset: no visible global function definition for
     ‘read.table’
    run.JAGS.study: no visible global function definition for
     ‘flush.console’
    run.JAGS.study : FUN: no visible global function definition for
     ‘capture.output’
    run.JAGS.study : FUN: no visible global function definition for
     ‘flush.console’
    run.JAGS.study: no visible global function definition for
     ‘capture.output’
    run.jags.study: no visible global function definition for
     ‘flush.console’
    run.jags.study : FUN: no visible global function definition for
     ‘capture.output’
    run.jags.study : FUN: no visible global function definition for
     ‘flush.console’
    run.jags.study: no visible global function definition for
     ‘capture.output’
    runjags.interruptible: no visible global function definition for
     ‘flush.console’
    runjags.parallel: no visible global function definition for
     ‘flush.console’
    runjags.readin: no visible global function definition for ‘read.csv’
    runjags.readin: no visible global function definition for ‘read.table’
    runjags.rjags: no visible global function definition for
     ‘flush.console’
    runjags.rjags: no visible global function definition for ‘update’
    runjags.rjparallel: no visible global function definition for
     ‘capture.output’
    runjags.rjparallel : clfun: no visible global function definition for
     ‘packageVersion’
    runjags.rjparallel : clfun: no visible global function definition for
     ‘flush.console’
    runjags.rjparallel : clfun: no visible global function definition for
     ‘update’
    runjags.simple: no visible global function definition for
     ‘flush.console’
    runjags.snow: no visible global function definition for
     ‘capture.output’
    runjags.summaries: no visible binding for global variable ‘median’
    runjagsplots: no visible global function definition for ‘rainbow’
    runjagsplots: no visible global function definition for ‘quantile’
    runjagsplots: no visible global function definition for ‘acf’
    setup.JAGS: no visible global function definition for ‘na.omit’
    setup.jags: no visible global function definition for ‘na.omit’
    setup.jagsfile: no visible global function definition for ‘na.omit’
    setup.xgrid: no visible global function definition for ‘na.omit’
    setup.xgrid: no visible global function definition for ‘capture.output’
    summarise.jags.study : <anonymous>: no visible binding for global
     variable ‘var’
    summarise.jags.study : <anonymous>: no visible binding for global
     variable ‘median’
    tailf: no visible global function definition for ‘flush.console’
    template.JAGS: no visible global function definition for ‘as.formula’
    template.JAGS: no visible global function definition for ‘var’
    template.jags: no visible global function definition for ‘as.formula’
    template.jags: no visible global function definition for ‘var’
    timestring: no visible global function definition for ‘na.omit’
    versionmatch: no visible global function definition for
     ‘compareVersion’
    waitforxgridjob: no visible global function definition for
     ‘flush.console’
    write.JAGSfile: no visible global function definition for
     ‘capture.output’
    write.jagsfile: no visible global function definition for
     ‘capture.output’
    Undefined global functions or variables:
     acf as.formula capture.output compareVersion data dev.new dev.off
     find flush.console median na.omit packageVersion pdf quantile rainbow
     read.csv read.table start topo.colors update var window
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.0.1-4
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'UserGuide.tex' failed.
    LaTeX errors:
    ! LaTeX Error: Unknown float option `l'.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-solaris-sparc, r-patched-solaris-x86