CRAN Package Check Results for Package samr

Last updated on 2015-03-31 03:48:41.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0 1.04 38.70 39.74 NOTE
r-devel-linux-x86_64-debian-gcc 2.0 1.08 38.54 39.62 NOTE
r-devel-linux-x86_64-fedora-clang 2.0 75.22 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0 78.38 NOTE
r-devel-osx-x86_64-clang 2.0 76.73 NOTE
r-prerel-windows-ix86+x86_64 2.0 8.00 88.00 96.00 NOTE
r-prerel-linux-x86_64 2.0 1.05 38.59 39.64 NOTE
r-prerel-solaris-sparc 2.0 578.40 NOTE
r-prerel-solaris-x86 2.0 96.00 NOTE
r-release-linux-x86_64 2.0 1.12 44.76 45.87 NOTE
r-release-osx-x86_64-mavericks 2.0 NOTE
r-release-osx-x86_64-snowleopard 2.0 NOTE
r-release-windows-ix86+x86_64 2.0 6.00 91.00 97.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0 6.00 92.00 98.00 NOTE

Check Details

Version: 2.0
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-windows-ix86+x86_64, r-prerel-linux-x86_64, r-prerel-solaris-sparc, r-prerel-solaris-x86

Version: 2.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘impute’ ‘matrixStats’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘impute’ ‘matrixStats’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-windows-ix86+x86_64, r-prerel-linux-x86_64, r-prerel-solaris-sparc, r-prerel-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 2.0
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.SAMoutput print.SAMoutput
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-linux-x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘samr.assess.samplesize.plot’
    Found the platform-specific device:
     ‘win.metafile’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    foldchange.seq.twoclass.paired: no visible global function definition
     for ‘rowMedians’
    foldchange.seq.twoclass.unpaired: no visible global function definition
     for ‘rowMedians’
    samr: no visible global function definition for ‘impute.knn’
    samr.xl.impute.data: no visible global function definition for
     ‘impute.knn’
    samr.xl.impute.data: no visible binding for global variable
     ‘samr.xl.var.knn.neighbors’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-linux-x86_64, r-prerel-solaris-sparc, r-prerel-solaris-x86, r-release-linux-x86_64

Version: 2.0
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'samr-internal':
     ‘plot.SAMoutput’ ‘print.SAMoutput’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-prerel-windows-ix86+x86_64, r-prerel-linux-x86_64, r-prerel-solaris-sparc, r-prerel-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    foldchange.seq.twoclass.paired: no visible global function definition
     for 'rowMedians'
    foldchange.seq.twoclass.unpaired: no visible global function definition
     for 'rowMedians'
    samr: no visible global function definition for 'impute.knn'
    samr.xl.impute.data: no visible global function definition for
     'impute.knn'
    samr.xl.impute.data: no visible binding for global variable
     'samr.xl.var.knn.neighbors'
Flavors: r-prerel-windows-ix86+x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘impute’ ‘matrixStats’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘impute’ ‘matrixStats’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'samr-internal':
     ‘plot.SAMoutput’ ‘print.SAMoutput’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    samr.xl.impute.data: no visible binding for global variable
     ‘samr.xl.var.knn.neighbors’
Flavors: r-release-osx-x86_64-snowleopard, r-oldrel-windows-ix86+x86_64