CRAN Package Check Results for Package samr

Last updated on 2014-12-19 03:47:43.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0 1.16 44.36 45.52 NOTE
r-devel-linux-x86_64-debian-gcc 2.0 1.12 42.74 43.86 NOTE
r-devel-linux-x86_64-fedora-clang 2.0 86.51 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0 83.16 NOTE
r-devel-osx-x86_64-clang 2.0 80.43 NOTE
r-devel-windows-ix86+x86_64 2.0 6.00 98.00 104.00 NOTE
r-patched-linux-x86_64 2.0 1.20 42.71 43.90 NOTE
r-patched-solaris-sparc 2.0 620.50 NOTE
r-patched-solaris-x86 2.0 106.50 NOTE
r-release-linux-ix86 2.0 1.62 56.52 58.13 NOTE
r-release-linux-x86_64 2.0 1.30 42.70 44.00 NOTE
r-release-osx-x86_64-mavericks 2.0 NOTE
r-release-osx-x86_64-snowleopard 2.0 NOTE
r-release-windows-ix86+x86_64 2.0 6.00 96.00 102.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0 6.00 103.00 109.00 NOTE

Check Details

Version: 2.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘impute’ ‘matrixStats’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘impute’ ‘matrixStats’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘samr.assess.samplesize.plot’
    Found the platform-specific device:
     ‘win.metafile’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    foldchange.seq.twoclass.paired: no visible global function definition
     for ‘rowMedians’
    foldchange.seq.twoclass.unpaired: no visible global function definition
     for ‘rowMedians’
    samr: no visible global function definition for ‘impute.knn’
    samr.xl.impute.data: no visible global function definition for
     ‘impute.knn’
    samr.xl.impute.data: no visible binding for global variable
     ‘samr.xl.var.knn.neighbors’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64

Version: 2.0
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'samr-internal':
     ‘plot.SAMoutput’ ‘print.SAMoutput’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    foldchange.seq.twoclass.paired: no visible global function definition
     for 'rowMedians'
    foldchange.seq.twoclass.unpaired: no visible global function definition
     for 'rowMedians'
    samr: no visible global function definition for 'impute.knn'
    samr.xl.impute.data: no visible global function definition for
     'impute.knn'
    samr.xl.impute.data: no visible binding for global variable
     'samr.xl.var.knn.neighbors'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    samr.xl.impute.data: no visible binding for global variable
     ‘samr.xl.var.knn.neighbors’
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-oldrel-windows-ix86+x86_64