CRAN Package Check Results for Package semTools

Last updated on 2014-04-24 09:49:10.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4-0 2.04 68.92 70.96 NOTE
r-devel-linux-x86_64-debian-gcc 0.4-0 2.04 67.20 69.24 NOTE
r-devel-linux-x86_64-fedora-clang 0.4-0 139.36 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4-0 135.95 NOTE
r-devel-osx-x86_64-clang 0.4-0 114.70 NOTE
r-devel-osx-x86_64-gcc 0.4-0 NOTE
r-devel-windows-ix86+x86_64 0.4-0 6.00 93.00 99.00 NOTE
r-patched-linux-x86_64 0.4-0 1.99 66.54 68.53 NOTE
r-patched-solaris-sparc 0.4-0 773.20 NOTE
r-patched-solaris-x86 0.4-0 160.40 NOTE
r-release-linux-ix86 0.4-0 4.00 103.00 107.00 NOTE
r-release-linux-x86_64 0.4-0 2.02 69.20 71.21 NOTE
r-release-osx-x86_64-mavericks 0.4-0 WARN
r-release-osx-x86_64-snowleopard 0.4-0 NOTE
r-release-windows-ix86+x86_64 0.4-0 6.00 98.00 104.00 NOTE
r-oldrel-windows-ix86+x86_64 0.4-0 6.00 96.00 102.00 NOTE

Check Details

Version: 0.4-0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘OpenMx’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4-0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘MASS’ ‘lavaan’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘MASS’ ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    Unexported objects imported by ':::' calls:
     ‘lavaan:::Fit’ ‘lavaan:::computeObjective’
     ‘lavaan:::computeTestStatistic’ ‘lavaan:::computeVY’
     ‘lavaan:::independence.model.fit’ ‘lavaan:::lavJacobianD’
     ‘lavaan:::vnames’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4-0
Check: R code for possible problems
Result: NOTE
    nullMx: no visible global function definition for ‘mxAlgebra’
    nullMx: no visible global function definition for ‘mxAlgebraObjective’
    nullMx: no visible global function definition for ‘mxModel’
    nullMx: no visible global function definition for ‘mxRun’
    nullMxSingleGroup: no visible global function definition for ‘mxData’
    nullMxSingleGroup: no visible global function definition for ‘mxMatrix’
    nullMxSingleGroup: no visible global function definition for ‘mxModel’
    nullMxSingleGroup: no visible global function definition for
     ‘mxFIMLObjective’
    nullMxSingleGroup: no visible global function definition for
     ‘mxMLObjective’
    saturateMx: no visible global function definition for ‘mxAlgebra’
    saturateMx: no visible global function definition for
     ‘mxAlgebraObjective’
    saturateMx: no visible global function definition for ‘mxModel’
    saturateMx: no visible global function definition for ‘mxRun’
    saturateMxSingleGroup: no visible global function definition for
     ‘mxData’
    saturateMxSingleGroup: no visible global function definition for
     ‘mxMatrix’
    saturateMxSingleGroup: no visible global function definition for
     ‘mxModel’
    saturateMxSingleGroup: no visible global function definition for
     ‘mxFIMLObjective’
    saturateMxSingleGroup: no visible global function definition for
     ‘mxMLObjective’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4-0
Check: Rd line widths
Result: NOTE
    Rd file 'fmi.Rd':
     \usage lines wider than 90 characters:
     fmi(dat.imp, method="saturated", varnames=NULL, group=NULL, exclude=NULL, digits=3)
    
    Rd file 'indProd.Rd':
     \examples lines wider than 100 characters:
     dat2 <- indProd(attitude[,-1], var1=1:3, var2=4:6, match=FALSE, meanC=FALSE, residualC=TRUE, doubleMC=FALSE)
     dat3 <- indProd(attitude[,-1], var1=1:3, var2=4:6, match=FALSE, meanC=TRUE, residualC=FALSE, doubleMC=TRUE)
     dat5 <- indProd(attitude[,-1], var1=1:2, var2=3:4, var3=5:6, match=FALSE, meanC=FALSE, residualC=TRUE, doubleMC=FALSE)
     dat6 <- indProd(attitude[,-1], var1=1:2, var2=3:4, var3=5:6, match=FALSE, meanC=TRUE, residualC=TRUE, doubleMC=TRUE)
    
    Rd file 'longInvariance.Rd':
     \examples lines wider than 100 characters:
     longInvariance(model, auto=1, constrainAuto=TRUE, varList=constrainedVar, data=exLong, group="sex", group.equal=c("loadings", "intercep ... [TRUNCATED]
    
    Rd file 'miPowerFit.Rd':
     \usage lines wider than 90 characters:
     miPowerFit(lavaanObj, stdLoad=0.4, cor=0.1, stdBeta=0.1, intcept=0.2, stdDelta=NULL, delta=NULL)
    
    Rd file 'parcelAllocation.Rd':
     \usage lines wider than 90 characters:
     parcelAllocation(nPerPar, facPlc, nAlloc=100, syntax, dataset, names='default', leaveout=0, ...)
     \examples lines wider than 100 characters:
     parcelAllocation(list(c(3,3,3),c(3,3,3)), list(name1, name2), nAlloc=20, syntax=syntax, dataset=simParcel)
    
    Rd file 'plotProbe.Rd':
     \examples lines wider than 100 characters:
     result3wayMC <- probe3WayMC(fitMC3way, c("f1", "f2", "f3", "f12", "f13", "f23", "f123"), "f4", c("f1", "f2"), c(-1, 0, 1), c(-1, 0, 1))
    
    Rd file 'probe3WayMC.Rd':
     \examples lines wider than 100 characters:
     result3wayMC <- probe3WayMC(fitMC3way, c("f1", "f2", "f3", "f12", "f13", "f23", "f123"), "f4", c("f1", "f2"), c(-1, 0, 1), c(-1, 0, 1))
    
    Rd file 'probe3WayRC.Rd':
     \examples lines wider than 100 characters:
     result3wayRC <- probe3WayRC(fitRC3way, c("f1", "f2", "f3", "f12", "f13", "f23", "f123"), "f4", c("f1", "f2"), c(-1, 0, 1), c(-1, 0, 1))
    
    Rd file 'runMI.Rd':
     \examples lines wider than 100 characters:
     out5 <- cfa.mi(analyzeModel, data=dat, ordered=paste0("y", 1:4), m = 3, miArgs=list(ords = c("y1", "y2", "y3", "y4")))
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.4-0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘mice’ ‘OpenMx’
Flavors: r-devel-osx-x86_64-gcc, r-release-osx-x86_64-mavericks

Version: 0.4-0
Check: R code for possible problems
Result: NOTE
    imputeMissingMice: no visible binding for global variable ‘mice’
    imputeMissingMice: no visible global function definition for ‘complete’
    nullMx: no visible global function definition for ‘mxAlgebra’
    nullMx: no visible global function definition for ‘mxAlgebraObjective’
    nullMx: no visible global function definition for ‘mxModel’
    nullMx: no visible global function definition for ‘mxRun’
    nullMxSingleGroup: no visible global function definition for ‘mxData’
    nullMxSingleGroup: no visible global function definition for ‘mxMatrix’
    nullMxSingleGroup: no visible global function definition for ‘mxModel’
    nullMxSingleGroup: no visible global function definition for
     ‘mxFIMLObjective’
    nullMxSingleGroup: no visible global function definition for
     ‘mxMLObjective’
    saturateMx: no visible global function definition for ‘mxAlgebra’
    saturateMx: no visible global function definition for
     ‘mxAlgebraObjective’
    saturateMx: no visible global function definition for ‘mxModel’
    saturateMx: no visible global function definition for ‘mxRun’
    saturateMxSingleGroup: no visible global function definition for
     ‘mxData’
    saturateMxSingleGroup: no visible global function definition for
     ‘mxMatrix’
    saturateMxSingleGroup: no visible global function definition for
     ‘mxModel’
    saturateMxSingleGroup: no visible global function definition for
     ‘mxFIMLObjective’
    saturateMxSingleGroup: no visible global function definition for
     ‘mxMLObjective’
Flavors: r-devel-osx-x86_64-gcc, r-release-osx-x86_64-mavericks

Version: 0.4-0
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    675daca5/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 0.4-0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     'MASS' 'lavaan'
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     'MASS' 'methods'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    Unexported objects imported by ':::' calls:
     'lavaan:::Fit' 'lavaan:::computeObjective'
     'lavaan:::computeTestStatistic' 'lavaan:::computeVY'
     'lavaan:::independence.model.fit' 'lavaan:::lavJacobianD'
     'lavaan:::vnames'
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard