CRAN Package Check Results for Package seqMeta

Last updated on 2015-08-31 04:49:00.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.6.0 3.90 161.28 165.17 NOTE
r-devel-linux-x86_64-debian-gcc 1.6.0 3.86 159.40 163.26 NOTE
r-devel-linux-x86_64-fedora-clang 1.6.0 331.64 NOTE
r-devel-linux-x86_64-fedora-gcc 1.6.0 311.48 NOTE
r-devel-osx-x86_64-clang 1.6.0 228.27 OK
r-devel-windows-ix86+x86_64 1.6.0 22.00 351.00 373.00 NOTE
r-patched-linux-x86_64 1.6.0 4.26 162.14 166.41 OK
r-patched-solaris-sparc 1.6.0 2160.40 OK
r-patched-solaris-x86 1.6.0 425.50 OK
r-release-linux-x86_64 1.6.0 4.25 162.18 166.43 OK
r-release-osx-x86_64-mavericks 1.6.0 OK
r-release-windows-ix86+x86_64 1.6.0 22.00 446.00 468.00 OK
r-oldrel-windows-ix86+x86_64 1.6.0 28.00 418.00 446.00 OK

Check Details

Version: 1.6.0
Check: R code for possible problems
Result: NOTE
    burdenMeta: no visible global function definition for ‘na.omit’
    burdenMeta: no visible global function definition for ‘txtProgressBar’
    burdenMeta: no visible global function definition for ‘pchisq’
    burdenMeta: no visible global function definition for
     ‘setTxtProgressBar’
    calculate_cov : <anonymous>: no visible binding for global variable
     ‘var’
    calculate_cov : <anonymous> : <anonymous>: no visible global function
     definition for ‘cov’
    check_dropped_subjects: no visible global function definition for
     ‘na.action’
    check_dropped_subjects: no visible global function definition for
     ‘capture.output’
    check_format_skat: no visible global function definition for
     ‘residuals’
    check_format_skat: no visible global function definition for
     ‘na.action’
    check_format_skat: no visible global function definition for
     ‘capture.output’
    check_format_skat: no visible binding for global variable ‘formula’
    create_model: no visible global function definition for ‘model.matrix’
    create_model: no visible global function definition for ‘lm’
    create_model: no visible global function definition for ‘glm’
    create_model: no visible global function definition for ‘residuals’
    create_model: no visible global function definition for ‘var’
    create_model: no visible global function definition for ‘model.frame’
    create_model: no visible global function definition for ‘coef’
    is_mono : <anonymous>: no visible global function definition for
     ‘na.omit’
    is_monomorphic : <anonymous>: no visible global function definition for
     ‘na.omit’
    prepCondScores: no visible global function definition for ‘gaussian’
    prepCox: no visible global function definition for ‘model.matrix’
    prepCox: no visible global function definition for ‘model.frame’
    prepCox: no visible global function definition for ‘coef’
    prepCox: no visible global function definition for ‘txtProgressBar’
    prepCox : <anonymous>: no visible global function definition for
     ‘setTxtProgressBar’
    prepCox : <anonymous>: no visible global function definition for ‘coef’
    prepCox : <anonymous>: no visible global function definition for
     ‘na.omit’
    prepCox : <anonymous>: no visible binding for global variable ‘var’
    prepCox : <anonymous> : <anonymous>: no visible global function
     definition for ‘cov’
    prepScores: no visible global function definition for ‘gaussian’
    prepScores: no visible global function definition for ‘model.matrix’
    prepScores: no visible global function definition for ‘lm’
    prepScores: no visible global function definition for ‘glm’
    prepScores: no visible global function definition for ‘residuals’
    prepScores: no visible global function definition for ‘txtProgressBar’
    prepScores : <anonymous>: no visible global function definition for
     ‘setTxtProgressBar’
    prepScores : <anonymous>: no visible global function definition for
     ‘na.omit’
    prepScores: no visible global function definition for ‘var’
    prepScores2: no visible global function definition for ‘coef’
    prepScoresX: no visible global function definition for ‘gaussian’
    prepScoresX: no visible global function definition for ‘model.matrix’
    prepScoresX: no visible global function definition for ‘lm’
    prepScoresX: no visible global function definition for ‘glm’
    prepScoresX: no visible global function definition for ‘residuals’
    prepScoresX: no visible global function definition for ‘txtProgressBar’
    prepScoresX : <anonymous>: no visible global function definition for
     ‘setTxtProgressBar’
    prepScoresX : <anonymous>: no visible global function definition for
     ‘na.omit’
    prepScoresX: no visible global function definition for ‘var’
    saddle: no visible global function definition for ‘pchisq’
    saddle: no visible global function definition for ‘uniroot’
    saddle: no visible global function definition for ‘pnorm’
    singlesnpMeta: no visible global function definition for ‘na.omit’
    singlesnpMeta: no visible global function definition for
     ‘txtProgressBar’
    singlesnpMeta: no visible global function definition for ‘pchisq’
    singlesnpMeta: no visible global function definition for
     ‘setTxtProgressBar’
    skatMeta : <anonymous>: no visible global function definition for
     ‘dbeta’
    skatMeta: no visible global function definition for ‘na.omit’
    skatMeta: no visible global function definition for ‘txtProgressBar’
    skatMeta: no visible global function definition for ‘setTxtProgressBar’
    skatOMeta : <anonymous>: no visible global function definition for
     ‘dbeta’
    skatOMeta: no visible global function definition for ‘na.omit’
    skatOMeta: no visible global function definition for ‘txtProgressBar’
    skatOMeta: no visible global function definition for ‘pchisq’
    skatOMeta: no visible global function definition for
     ‘setTxtProgressBar’
    skatO_getp: no visible global function definition for ‘qchisq’
    skatO_getp: no visible global function definition for ‘uniroot’
    skatO_getp : integrand: no visible global function definition for
     ‘dchisq’
    skatO_getp: no visible global function definition for ‘integrate’
    Undefined global functions or variables:
     capture.output coef cov dbeta dchisq formula gaussian glm integrate
     lm model.frame model.matrix na.action na.omit pchisq pnorm qchisq
     residuals setTxtProgressBar txtProgressBar uniroot var
    Consider adding
     importFrom("stats", "coef", "cov", "dbeta", "dchisq", "formula",
     "gaussian", "glm", "integrate", "lm", "model.frame",
     "model.matrix", "na.action", "na.omit", "pchisq", "pnorm",
     "qchisq", "residuals", "uniroot", "var")
     importFrom("utils", "capture.output", "setTxtProgressBar",
     "txtProgressBar")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64