CRAN Package Check Results for Package seqMeta

Last updated on 2015-07-03 21:46:49.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.6.0 4.10 158.14 162.23 NOTE
r-devel-linux-x86_64-debian-gcc 1.6.0 4.05 159.60 163.65 NOTE
r-devel-linux-x86_64-fedora-clang 1.6.0 337.50 NOTE
r-devel-linux-x86_64-fedora-gcc 1.6.0 321.85 NOTE
r-devel-osx-x86_64-clang 1.6.0 231.31 OK
r-devel-windows-ix86+x86_64 1.6.0 17.00 316.00 333.00 NOTE
r-patched-linux-x86_64 1.6.0 4.32 158.48 162.80 OK
r-patched-solaris-sparc 1.6.0 1957.20 OK
r-patched-solaris-x86 1.6.0 360.80 OK
r-release-linux-x86_64 1.6.0 4.02 161.07 165.10 OK
r-release-osx-x86_64-mavericks 1.6.0 OK
r-release-windows-ix86+x86_64 1.6.0 20.00 304.00 324.00 OK
r-oldrel-windows-ix86+x86_64 1.6.0 19.00 368.00 387.00 OK

Check Details

Version: 1.6.0
Check: R code for possible problems
Result: NOTE
    burdenMeta: no visible global function definition for ‘na.omit’
    burdenMeta: no visible global function definition for ‘txtProgressBar’
    burdenMeta: no visible global function definition for ‘pchisq’
    burdenMeta: no visible global function definition for
     ‘setTxtProgressBar’
    calculate_cov : <anonymous>: no visible binding for global variable
     ‘var’
    calculate_cov : <anonymous> : <anonymous>: no visible global function
     definition for ‘cov’
    check_dropped_subjects: no visible global function definition for
     ‘na.action’
    check_dropped_subjects: no visible global function definition for
     ‘capture.output’
    check_format_skat: no visible global function definition for
     ‘residuals’
    check_format_skat: no visible global function definition for
     ‘na.action’
    check_format_skat: no visible global function definition for
     ‘capture.output’
    check_format_skat: no visible binding for global variable ‘formula’
    create_model: no visible global function definition for ‘model.matrix’
    create_model: no visible global function definition for ‘lm’
    create_model: no visible global function definition for ‘glm’
    create_model: no visible global function definition for ‘residuals’
    create_model: no visible global function definition for ‘var’
    create_model: no visible global function definition for ‘model.frame’
    create_model: no visible global function definition for ‘coef’
    is_mono : <anonymous>: no visible global function definition for
     ‘na.omit’
    is_monomorphic : <anonymous>: no visible global function definition for
     ‘na.omit’
    prepCondScores: Error while checking: invalid ‘envir’ argument
    prepCox: no visible global function definition for ‘model.matrix’
    prepCox: no visible global function definition for ‘model.frame’
    prepCox: no visible global function definition for ‘coef’
    prepCox: no visible global function definition for ‘txtProgressBar’
    prepCox : <anonymous>: no visible global function definition for
     ‘setTxtProgressBar’
    prepCox : <anonymous>: no visible global function definition for ‘coef’
    prepCox : <anonymous>: no visible global function definition for
     ‘na.omit’
    prepCox : <anonymous>: no visible binding for global variable ‘var’
    prepCox : <anonymous> : <anonymous>: no visible global function
     definition for ‘cov’
    prepScores: Error while checking: invalid ‘envir’ argument
    prepScores2: no visible global function definition for ‘coef’
    prepScoresX: Error while checking: invalid ‘envir’ argument
    saddle: no visible global function definition for ‘pchisq’
    saddle: no visible global function definition for ‘uniroot’
    saddle: no visible global function definition for ‘pnorm’
    singlesnpMeta: no visible global function definition for ‘na.omit’
    singlesnpMeta: no visible global function definition for
     ‘txtProgressBar’
    singlesnpMeta: no visible global function definition for ‘pchisq’
    singlesnpMeta: no visible global function definition for
     ‘setTxtProgressBar’
    skatMeta : <anonymous>: no visible global function definition for
     ‘dbeta’
    skatMeta: no visible global function definition for ‘na.omit’
    skatMeta: no visible global function definition for ‘txtProgressBar’
    skatMeta: no visible global function definition for ‘setTxtProgressBar’
    skatOMeta : <anonymous>: no visible global function definition for
     ‘dbeta’
    skatOMeta: no visible global function definition for ‘na.omit’
    skatOMeta: no visible global function definition for ‘txtProgressBar’
    skatOMeta: no visible global function definition for ‘pchisq’
    skatOMeta: no visible global function definition for
     ‘setTxtProgressBar’
    skatO_getp: no visible global function definition for ‘qchisq’
    skatO_getp: no visible global function definition for ‘uniroot’
    skatO_getp : integrand: no visible global function definition for
     ‘dchisq’
    skatO_getp: no visible global function definition for ‘integrate’
    Undefined global functions or variables:
     capture.output coef cov dbeta dchisq formula glm integrate lm
     model.frame model.matrix na.action na.omit pchisq pnorm qchisq
     residuals setTxtProgressBar txtProgressBar uniroot var
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64