CRAN Package Check Results for Package siar

Last updated on 2015-08-01 08:52:02.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 4.2 4.61 39.69 44.30 NOTE
r-devel-linux-x86_64-debian-gcc 4.2 5.71 37.86 43.57 NOTE
r-devel-linux-x86_64-fedora-clang 4.2 90.34 NOTE
r-devel-linux-x86_64-fedora-gcc 4.2 85.86 NOTE
r-devel-osx-x86_64-clang 4.2 76.03 NOTE
r-devel-windows-ix86+x86_64 4.2 23.00 88.00 111.00 NOTE
r-patched-linux-x86_64 4.2 4.82 38.38 43.20 NOTE
r-patched-solaris-sparc 4.2 559.30 NOTE
r-patched-solaris-x86 4.2 125.20 NOTE
r-release-linux-x86_64 4.2 4.64 38.28 42.93 NOTE
r-release-osx-x86_64-mavericks 4.2 NOTE
r-release-windows-ix86+x86_64 4.2 25.00 138.00 163.00 NOTE
r-oldrel-windows-ix86+x86_64 4.2 31.00 115.00 146.00 NOTE

Check Details

Version: 4.2
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘hdrcde’ ‘coda’ ‘MASS’ ‘bayesm’ ‘mnormt’ ‘spatstat’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 4.2
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 4.2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘MASS’ ‘bayesm’ ‘coda’ ‘hdrcde’ ‘mnormt’ ‘spatstat’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 4.2
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘newgraphwindow’
    Found the platform-specific devices:
     ‘quartz’ ‘windows’ ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    bayesMVN: no visible global function definition for ‘rmultireg’
    bayestwoNorm: no visible global function definition for ‘runireg’
    convexhull: no visible global function definition for ‘chull’
    laymanmetrics: no visible global function definition for ‘sd’
    newgraphwindow: no visible global function definition for ‘quartz’
    newgraphwindow: no visible global function definition for ‘x11’
    overlap: no visible global function definition for ‘overlap.xypolygon’
    panelcontour: no visible global function definition for ‘par’
    panelcontour: no visible global function definition for ‘kde2d’
    panelcontour: no visible global function definition for ‘contour’
    panelcor: no visible global function definition for ‘par’
    panelcor: no visible global function definition for ‘cor’
    panelcor: no visible global function definition for ‘strwidth’
    panelcor: no visible global function definition for ‘text’
    panelhist: no visible global function definition for ‘par’
    panelhist: no visible global function definition for ‘hist’
    panelhist: no visible global function definition for ‘rect’
    plotSigmaEllipse: no visible global function definition for ‘cov2cor’
    plotSigmaEllipse: no visible global function definition for ‘lines’
    popSEA: no visible global function definition for ‘cov2cor’
    siaraddcross: no visible global function definition for ‘points’
    siaraddcross: no visible global function definition for ‘lines’
    siardensityplot: no visible global function definition for ‘gray’
    siardensityplot: no visible global function definition for ‘plot’
    siardensityplot: no visible global function definition for ‘axis’
    siardensityplot: no visible global function definition for ‘hdr’
    siardensityplot: no visible global function definition for ‘bw.nrd0’
    siardensityplot: no visible global function definition for ‘median’
    siardensityplot: no visible global function definition for ‘polygon’
    siardensityplot: no visible global function definition for ‘points’
    siarelicit: no visible global function definition for ‘menu’
    siarhdrs: no visible global function definition for ‘hdr’
    siarhdrs: no visible global function definition for ‘bw.nrd0’
    siarhdrs: no visible global function definition for ‘geweke.diag’
    siarhdrs: no visible global function definition for ‘pnorm’
    siarhistograms: no visible global function definition for ‘menu’
    siarhistograms: no visible global function definition for ‘hist’
    siarhistograms: no visible global function definition for ‘plot’
    siarhistograms: no visible global function definition for ‘mtext’
    siarhistograms: no visible global function definition for ‘lines’
    siarhistograms: no visible global function definition for ‘legend’
    siarhistograms: no visible global function definition for
     ‘devAskNewPage’
    siarloaddata: no visible global function definition for ‘menu’
    siarloaddata: no visible global function definition for ‘read.table’
    siarmatrixplot: no visible global function definition for ‘pairs’
    siarmatrixplot: no visible global function definition for ‘mtext’
    siarmenu: no visible global function definition for ‘menu’
    siarmultigrouprun: no visible global function definition for ‘menu’
    siarplotdatawrapper: no visible global function definition for
     ‘split.screen’
    siarplotdatawrapper: no visible global function definition for ‘plot’
    siarplotdatawrapper: no visible global function definition for ‘screen’
    siarplotdatawrapper: no visible global function definition for
     ‘close.screen’
    siarplotdatawrapper: no visible global function definition for ‘mtext’
    siarplotdatawrapper: no visible global function definition for ‘legend’
    siarproportionbygroupplot: no visible global function definition for
     ‘gray’
    siarproportionbygroupplot: no visible global function definition for
     ‘menu’
    siarproportionbygroupplot: no visible global function definition for
     ‘plot’
    siarproportionbygroupplot: no visible global function definition for
     ‘axis’
    siarproportionbygroupplot: no visible global function definition for
     ‘mtext’
    siarproportionbygroupplot: no visible global function definition for
     ‘hdr’
    siarproportionbygroupplot: no visible global function definition for
     ‘bw.nrd0’
    siarproportionbygroupplot: no visible global function definition for
     ‘polygon’
    siarproportionbygroupplot: no visible global function definition for
     ‘lines’
    siarproportionbygroupplot: no visible global function definition for
     ‘legend’
    siarproportionbygroupplot: no visible global function definition for
     ‘strwidth’
    siarproportionbysourceplot: no visible global function definition for
     ‘gray’
    siarproportionbysourceplot: no visible global function definition for
     ‘menu’
    siarproportionbysourceplot: no visible global function definition for
     ‘plot’
    siarproportionbysourceplot: no visible global function definition for
     ‘axis’
    siarproportionbysourceplot: no visible global function definition for
     ‘mtext’
    siarproportionbysourceplot: no visible global function definition for
     ‘hdr’
    siarproportionbysourceplot: no visible global function definition for
     ‘bw.nrd0’
    siarproportionbysourceplot: no visible global function definition for
     ‘polygon’
    siarproportionbysourceplot: no visible global function definition for
     ‘lines’
    siarproportionbysourceplot: no visible global function definition for
     ‘legend’
    siarproportionbysourceplot: no visible global function definition for
     ‘strwidth’
    siarsinglegrouprun: no visible global function definition for ‘menu’
    siarsolomultigrouprun: no visible global function definition for ‘menu’
    siarsolosinglegrouprun: no visible global function definition for
     ‘menu’
    standard.ellipse: no visible global function definition for ‘cov’
    standard.ellipse: no visible global function definition for ‘qf’
    Undefined global functions or variables:
     axis bw.nrd0 chull close.screen contour cor cov cov2cor devAskNewPage
     geweke.diag gray hdr hist kde2d legend lines median menu mtext
     overlap.xypolygon pairs par plot pnorm points polygon qf quartz
     read.table rect rmultireg runireg screen sd split.screen strwidth
     text x11
    Consider adding
     importFrom("grDevices", "chull", "devAskNewPage", "gray", "quartz",
     "x11")
     importFrom("graphics", "axis", "close.screen", "contour", "hist",
     "legend", "lines", "mtext", "pairs", "par", "plot",
     "points", "polygon", "rect", "screen", "split.screen",
     "strwidth", "text")
     importFrom("stats", "bw.nrd0", "cor", "cov", "cov2cor", "median",
     "pnorm", "qf", "sd")
     importFrom("utils", "menu", "read.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 4.2
Check: Rd line widths
Result: NOTE
    Rd file 'siarmcmcdirichletv4.Rd':
     \usage lines wider than 90 characters:
     siarmcmcdirichletv4(data, sources, corrections = 0, concdep = 0, iterations=200000, burnin=50000, howmany=10000, thinby=15, prior = rep ... [TRUNCATED]
    
    Rd file 'siarplotdata.Rd':
     \usage lines wider than 90 characters:
     siarplotdata(siardata, siarversion = 0, grp=1:siardata$numgroups,panel=NULL,isos=c(0,0),leg=1)
    
    Rd file 'siarproportionbygroupplot.Rd':
     \usage lines wider than 90 characters:
     siarproportionbygroupplot(siardata, siarversion=0,probs=c(95,75,50),xlabels=NULL, grp=NULL, type="boxes",clr=gray((9:1)/10),scl=1,xspc= ... [TRUNCATED]
    
    Rd file 'siarproportionbysourceplot.Rd':
     \usage lines wider than 90 characters:
     siarproportionbysourceplot(siardata, siarversion=0,probs=c(95,75,50),xlabels=NULL, grp=NULL, type="boxes",clr=gray((9:1)/10),scl=1,xspc ... [TRUNCATED]
    
    Rd file 'siarsolomcmcv4.Rd':
     \usage lines wider than 90 characters:
     siarsolomcmcv4(data, sources, corrections = 0, concdep = 0, iterations=200000, burnin=50000, howmany=10000, thinby=15, prior = rep(1, n ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 4.2
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘newgraphwindow’
    Found the platform-specific devices:
     ‘quartz’ ‘windows’ ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    bayesMVN: no visible global function definition for ‘rmultireg’
    bayestwoNorm: no visible global function definition for ‘runireg’
    overlap: no visible global function definition for ‘overlap.xypolygon’
    panelcontour: no visible global function definition for ‘kde2d’
    siardensityplot: no visible global function definition for ‘hdr’
    siarhdrs: no visible global function definition for ‘hdr’
    siarhdrs: no visible global function definition for ‘geweke.diag’
    siarproportionbygroupplot: no visible global function definition for
     ‘hdr’
    siarproportionbysourceplot: no visible global function definition for
     ‘hdr’
    Undefined global functions or variables:
     geweke.diag hdr kde2d overlap.xypolygon rmultireg runireg
Flavor: r-devel-osx-x86_64-clang

Version: 4.2
Check: R code for possible problems
Result: NOTE
    bayesMVN: no visible global function definition for 'rmultireg'
    bayestwoNorm: no visible global function definition for 'runireg'
    convexhull: no visible global function definition for 'chull'
    laymanmetrics: no visible global function definition for 'sd'
    newgraphwindow: no visible global function definition for 'windows'
    newgraphwindow: no visible global function definition for 'x11'
    overlap: no visible global function definition for 'overlap.xypolygon'
    panelcontour: no visible global function definition for 'par'
    panelcontour: no visible global function definition for 'kde2d'
    panelcontour: no visible global function definition for 'contour'
    panelcor: no visible global function definition for 'par'
    panelcor: no visible global function definition for 'cor'
    panelcor: no visible global function definition for 'strwidth'
    panelcor: no visible global function definition for 'text'
    panelhist: no visible global function definition for 'par'
    panelhist: no visible global function definition for 'hist'
    panelhist: no visible global function definition for 'rect'
    plotSigmaEllipse: no visible global function definition for 'cov2cor'
    plotSigmaEllipse: no visible global function definition for 'lines'
    popSEA: no visible global function definition for 'cov2cor'
    siaraddcross: no visible global function definition for 'points'
    siaraddcross: no visible global function definition for 'lines'
    siardensityplot: no visible global function definition for 'gray'
    siardensityplot: no visible global function definition for 'plot'
    siardensityplot: no visible global function definition for 'axis'
    siardensityplot: no visible global function definition for 'hdr'
    siardensityplot: no visible global function definition for 'bw.nrd0'
    siardensityplot: no visible global function definition for 'median'
    siardensityplot: no visible global function definition for 'polygon'
    siardensityplot: no visible global function definition for 'points'
    siarelicit: no visible global function definition for 'menu'
    siarhdrs: no visible global function definition for 'hdr'
    siarhdrs: no visible global function definition for 'bw.nrd0'
    siarhdrs: no visible global function definition for 'geweke.diag'
    siarhdrs: no visible global function definition for 'pnorm'
    siarhistograms: no visible global function definition for 'menu'
    siarhistograms: no visible global function definition for 'hist'
    siarhistograms: no visible global function definition for 'plot'
    siarhistograms: no visible global function definition for 'mtext'
    siarhistograms: no visible global function definition for 'lines'
    siarhistograms: no visible global function definition for 'legend'
    siarhistograms: no visible global function definition for
     'devAskNewPage'
    siarloaddata: no visible global function definition for 'menu'
    siarloaddata: no visible global function definition for 'read.table'
    siarmatrixplot: no visible global function definition for 'pairs'
    siarmatrixplot: no visible global function definition for 'mtext'
    siarmenu: no visible global function definition for 'menu'
    siarmultigrouprun: no visible global function definition for 'menu'
    siarplotdatawrapper: no visible global function definition for
     'split.screen'
    siarplotdatawrapper: no visible global function definition for 'plot'
    siarplotdatawrapper: no visible global function definition for 'screen'
    siarplotdatawrapper: no visible global function definition for
     'close.screen'
    siarplotdatawrapper: no visible global function definition for 'mtext'
    siarplotdatawrapper: no visible global function definition for 'legend'
    siarproportionbygroupplot: no visible global function definition for
     'gray'
    siarproportionbygroupplot: no visible global function definition for
     'menu'
    siarproportionbygroupplot: no visible global function definition for
     'plot'
    siarproportionbygroupplot: no visible global function definition for
     'axis'
    siarproportionbygroupplot: no visible global function definition for
     'mtext'
    siarproportionbygroupplot: no visible global function definition for
     'hdr'
    siarproportionbygroupplot: no visible global function definition for
     'bw.nrd0'
    siarproportionbygroupplot: no visible global function definition for
     'polygon'
    siarproportionbygroupplot: no visible global function definition for
     'lines'
    siarproportionbygroupplot: no visible global function definition for
     'legend'
    siarproportionbygroupplot: no visible global function definition for
     'strwidth'
    siarproportionbysourceplot: no visible global function definition for
     'gray'
    siarproportionbysourceplot: no visible global function definition for
     'menu'
    siarproportionbysourceplot: no visible global function definition for
     'plot'
    siarproportionbysourceplot: no visible global function definition for
     'axis'
    siarproportionbysourceplot: no visible global function definition for
     'mtext'
    siarproportionbysourceplot: no visible global function definition for
     'hdr'
    siarproportionbysourceplot: no visible global function definition for
     'bw.nrd0'
    siarproportionbysourceplot: no visible global function definition for
     'polygon'
    siarproportionbysourceplot: no visible global function definition for
     'lines'
    siarproportionbysourceplot: no visible global function definition for
     'legend'
    siarproportionbysourceplot: no visible global function definition for
     'strwidth'
    siarsinglegrouprun: no visible global function definition for 'menu'
    siarsolomultigrouprun: no visible global function definition for 'menu'
    siarsolosinglegrouprun: no visible global function definition for
     'menu'
    standard.ellipse: no visible global function definition for 'cov'
    standard.ellipse: no visible global function definition for 'qf'
    Undefined global functions or variables:
     axis bw.nrd0 chull close.screen contour cor cov cov2cor devAskNewPage
     geweke.diag gray hdr hist kde2d legend lines median menu mtext
     overlap.xypolygon pairs par plot pnorm points polygon qf read.table
     rect rmultireg runireg screen sd split.screen strwidth text windows
     x11
    Consider adding
     importFrom("grDevices", "chull", "devAskNewPage", "gray", "windows",
     "x11")
     importFrom("graphics", "axis", "close.screen", "contour", "hist",
     "legend", "lines", "mtext", "pairs", "par", "plot",
     "points", "polygon", "rect", "screen", "split.screen",
     "strwidth", "text")
     importFrom("stats", "bw.nrd0", "cor", "cov", "cov2cor", "median",
     "pnorm", "qf", "sd")
     importFrom("utils", "menu", "read.table")
    to your NAMESPACE.
Flavor: r-devel-windows-ix86+x86_64

Version: 4.2
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘newgraphwindow’
    Found the platform-specific devices:
     ‘quartz’ ‘windows’ ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    bayesMVN: no visible global function definition for ‘rmultireg’
    bayestwoNorm: no visible global function definition for ‘runireg’
    overlap: no visible global function definition for ‘overlap.xypolygon’
    panelcontour: no visible global function definition for ‘kde2d’
    siardensityplot: no visible global function definition for ‘hdr’
    siarhdrs: no visible global function definition for ‘hdr’
    siarhdrs: no visible global function definition for ‘geweke.diag’
    siarproportionbygroupplot: no visible global function definition for
     ‘hdr’
    siarproportionbysourceplot: no visible global function definition for
     ‘hdr’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 4.2
Check: R code for possible problems
Result: NOTE
    bayesMVN: no visible global function definition for ‘rmultireg’
    bayestwoNorm: no visible global function definition for ‘runireg’
    overlap: no visible global function definition for ‘overlap.xypolygon’
    panelcontour: no visible global function definition for ‘kde2d’
    siardensityplot: no visible global function definition for ‘hdr’
    siarhdrs: no visible global function definition for ‘hdr’
    siarhdrs: no visible global function definition for ‘geweke.diag’
    siarproportionbygroupplot: no visible global function definition for
     ‘hdr’
    siarproportionbysourceplot: no visible global function definition for
     ‘hdr’
Flavors: r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64