Last updated on 2025-02-19 16:51:36 CET.
Package | ERROR | NOTE | OK |
---|---|---|---|
acss.data | 6 | 9 | |
afex | 2 | 13 | |
fddm | 4 | 11 | |
MPTinR | 14 | 1 | |
MPTmultiverse | 15 | ||
rtdists | 12 | 3 |
Current CRAN status: NOTE: 6, OK: 9
Version: 1.0
Check: installed package size
Result: NOTE
installed size is 14.6Mb
sub-directories of 1Mb or more:
R 14.6Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 2, OK: 13
Version: 1.4-1
Check: tests
Result: ERROR
Running ‘testthat.R’ [121s/136s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(afex)
Loading required package: lme4
Loading required package: Matrix
************
Welcome to afex. For support visit: http://afex.singmann.science/
- Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
- Methods for calculating p-values with mixed(): 'S', 'KR', 'LRT', and 'PB'
- 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
- Get and set global package options with: afex_options()
- Set sum-to-zero contrasts globally: set_sum_contrasts()
- For example analyses see: browseVignettes("afex")
************
Attaching package: 'afex'
The following object is masked from 'package:lme4':
lmer
>
> test_check("afex")
Mixed Model Anova Table (Type 3 tests, S-method)
Model: value ~ treatment + (1 | id)
Data: obk.long
Effect df F p.value
1 treatment 2, 8.24 2.19 .173
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
Mixed Model Anova Table (Type 3 tests, S-method)
Model: value ~ treatment + phase + (1 | id)
Data: obk.long
Effect df F p.value
1 treatment 2, 12.78 2.88 + .093
2 phase 2, 222.08 38.51 *** <.001
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
Mixed Model Anova Table (Type 3 tests, LRT-method)
Model: value ~ treatment + (1 | id)
Data: obk.long
Df full model: 5
Effect df Chisq p.value
1 treatment 2 NaN <NA>
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
Mixed Model Anova Table (Type 3 tests, LRT-method)
Model: value ~ treatment + phase + (1 | id)
Data: obk.long
Df full model: 7
Effect df Chisq p.value
1 treatment 2 NaN <NA>
2 phase 2 NaN <NA>
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
Mixed Model Anova Table (Type 3 tests, PB-method)
Model: use ~ urban + (1 | district)
Data: Contraception
Effect df Chisq p.value
1 urban 1 31.28 .333
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
Mixed Model Anova Table (Type 3 tests, PB-method)
Model: use ~ urban + livch + (1 | district)
Data: Contraception
Effect df Chisq p.value
1 urban 1 36.33 .333
2 livch 3 77.91 .333
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
[ FAIL 9 | WARN 496 | SKIP 29 | PASS 332 ]
══ Skipped tests (29) ══════════════════════════════════════════════════════════
• On CRAN (28): 'test-afex_plot-basics.R:11:3', 'test-afex_plot-basics.R:76:3',
'test-afex_plot-basics.R:111:3', 'test-afex_plot-basics.R:140:3',
'test-afex_plot-basics.R:346:3', 'test-afex_plot-basics.R:360:3',
'test-afex_plot-bugs.R:6:3', 'test-afex_plot-bugs.R:21:3',
'test-afex_plot-bugs.R:43:3', 'test-afex_plot-bugs.R:79:3',
'test-afex_plot-default-support.R:11:3',
'test-afex_plot-default-support.R:20:3',
'test-afex_plot-default-support.R:38:3',
'test-afex_plot-default-support.R:66:3', 'test-afex_plot-vignette.R:4:3',
'test-afex_plot-vignette.R:38:3', 'test-afex_plot-vignette.R:114:3',
'test-aov_car-bugs.R:253:3', 'test-emmeans-interface.R:144:3',
'test-emmeans-interface.R:209:3', 'test-mixed-bugs.R:6:3',
'test-mixed-bugs.R:19:3', 'test-mixed-structure.R:214:5',
'test-mixed-structure.R:242:3', 'test-mixed-structure.R:264:3',
'test-mixed-structure.R:305:3', 'test-mixed-structure.R:349:3',
'test-mixed-structure.R:369:3'
• empty test (1): 'test-mixed-structure.R:86:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-mixed-mw.R:10:3'): mixed: Maxell & Delaney (2004), Table 16.3, p. 837 ──
`x` not equal to `expected`.
1/1 mismatches
[1] 3.28 - 9.97 == -6.69
Backtrace:
▆
1. └─testthat::expect_that(round(anova(mixed1_orig)[1, "F"], 2), equals(9.97)) at test-mixed-mw.R:10:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
── Failure ('test-mixed-mw.R:11:3'): mixed: Maxell & Delaney (2004), Table 16.3, p. 837 ──
`x` not equal to `expected`.
1/1 mismatches
[1] 0.83 - 0.03 == 0.8
Backtrace:
▆
1. └─testthat::expect_that(...) at test-mixed-mw.R:11:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
── Failure ('test-mixed-mw.R:20:3'): mixed: Maxell & Delaney (2004), Table 16.6, p. 845 ──
unname(round(fixef(mixed2_orig$full_model), 4)) not equivalent to c(35.6261, -8.1485).
2/2 mismatches (average diff: 0.0848)
[1] 35.54 - 35.63 == -0.0821
[2] -8.06 - -8.15 == 0.0875
── Failure ('test-mixed-mw.R:23:3'): mixed: Maxell & Delaney (2004), Table 16.6, p. 845 ──
`x` not equal to `expected`.
2/2 mismatches (average diff: 1.12)
[1] 4.16 - 3.23 == 0.927
[2] 5.86 - 4.55 == 1.315
Backtrace:
▆
1. └─testthat::expect_that(...) at test-mixed-mw.R:23:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
── Failure ('test-mixed-mw.R:27:3'): mixed: Maxell & Delaney (2004), Table 16.6, p. 845 ──
`x` not equal to `expected`.
1/1 mismatches
[1] 1.9 - 3.2 == -1.3
Backtrace:
▆
1. └─testthat::expect_that(round(mixed2_orig[[1]]$F, 1), equals(3.2)) at test-mixed-mw.R:27:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
── Failure ('test-mixed-mw.R:39:3'): mixed: Maxell & Delaney (2004), Table 16.7, p. 851 (uses simple F!) ──
`x` not equivalent to `expected`.
2/3 mismatches (average diff: 0.26)
[1] 20.05 - 20.25 == -0.20
[2] -7.25 - -7.57 == 0.32
Backtrace:
▆
1. └─testthat::expect_that(...) at test-mixed-mw.R:39:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equivalent(x, expected, expected.label = label)
── Failure ('test-mixed-mw.R:41:3'): mixed: Maxell & Delaney (2004), Table 16.7, p. 851 (uses simple F!) ──
`x` not equal to `expected`.
3/3 mismatches (average diff: 3.42)
[1] 12.1 - 5.82 == 6.30
[2] 5.8 - 2.72 == 3.08
[3] 1.7 - 0.81 == 0.89
Backtrace:
▆
1. └─testthat::expect_that(...) at test-mixed-mw.R:41:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
── Failure ('test-mixed-mw.R:45:3'): mixed: Maxell & Delaney (2004), Table 16.7, p. 851 (uses simple F!) ──
`x` not equal to `expected`.
2/2 mismatches (average diff: 6)
[1] 2 - 8 == -6
[2] 2 - 8 == -6
Backtrace:
▆
1. └─testthat::expect_that(...) at test-mixed-mw.R:45:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
── Failure ('test-mixed-mw.R:58:3'): mixed: Maxell & Delaney (2004), Table 16.10, p. 862 (does not replicate the table!) ──
`x` not equivalent to `expected`.
4/4 mismatches (average diff: 0.153)
[1] 35.90 - 36.10 == -0.20
[2] -8.87 - -9.07 == 0.20
[3] 0.72 - 0.64 == 0.08
[4] -0.10 - 0.03 == -0.13
Backtrace:
▆
1. └─testthat::expect_that(...) at test-mixed-mw.R:58:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equivalent(x, expected, expected.label = label)
[ FAIL 9 | WARN 496 | SKIP 29 | PASS 332 ]
Deleting unused snapshots:
• afex_plot-basics/afex-plot-connecting-individual-points-works.svg
• afex_plot-basics/geoms-work-box-plot.svg
• afex_plot-basics/geoms-work-boxjitter-1.svg
• afex_plot-basics/geoms-work-boxjitter-2.svg
• afex_plot-basics/geoms-work-boxjitter-3.svg
• afex_plot-basics/geoms-work-geom-count.svg
• afex_plot-basics/geoms-work-ggbeeswarm-geom-beeswarm.svg
• afex_plot-basics/geoms-work-ggbeeswarm-geom-quasirandom.svg
• afex_plot-basics/geoms-work-jitterdodge.svg
• afex_plot-basics/geoms-work-violin-with-colour.svg
• afex_plot-basics/geoms-work-violin.svg
• afex_plot-basics/lme4-mermod-plot-2.svg
• afex_plot-basics/lme4-mermod-plot-3.svg
• afex_plot-basics/mixed-model-1.svg
• afex_plot-basics/mixed-model-2.svg
• afex_plot-basics/mixed-model-3.svg
• afex_plot-basics/mixed-model-4.svg
• afex_plot-basics/multiple-geoms-work-1.svg
• afex_plot-basics/multiple-geoms-work-2.svg
• afex_plot-basics/one-way-within.svg
• afex_plot-basics/plot-first-for-afex-plot-works-1.svg
• afex_plot-basics/plot-first-for-afex-plot-works-2.svg
• afex_plot-basics/plot-first-for-afex-plot-works-3.svg
• afex_plot-basics/plot-first-for-afex-plot-works-4.svg
• afex_plot-basics/two-way.svg
• afex_plot-basics/x-trace-panel.svg
• afex_plot-bugs/afex-plot-binomial-glm-with-factor-2.svg
• afex_plot-bugs/afex-plot-dv-y-works.svg
• afex_plot-bugs/afex-plot-lmm-type-2.svg
• afex_plot-bugs/afex-plot-mermod-objects-with-missing-data.svg
• afex_plot-default-support/afex-plots-binomial-glm-1.svg
• afex_plot-default-support/afex-plots-binomial-glm-2.svg
• afex_plot-default-support/afex-plots-lm-model-2.svg
• afex_plot-default-support/afex-plots-nlme-2.svg
• afex_plot-default-support/afex-plots-nlme-3.svg
• afex_plot-default-support/afex-plots-nlme-4.svg
• afex_plot-default-support/afex-plots-nlme-5.svg
• afex_plot-default-support/afex-plots-poisson-glm-1.svg
• afex_plot-default-support/afex-plots-poisson-glm-2.svg
• afex_plot-vignette/afex-plot-glmmtmb-1.svg
• afex_plot-vignette/afex-plot-glmmtmb-2.svg
• afex_plot-vignette/afex-plot-glmmtmb-3.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.4-1
Check: tests
Result: ERROR
Running ‘testthat.R’ [124s/138s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(afex)
Loading required package: lme4
Loading required package: Matrix
************
Welcome to afex. For support visit: http://afex.singmann.science/
- Functions for ANOVAs: aov_car(), aov_ez(), and aov_4()
- Methods for calculating p-values with mixed(): 'S', 'KR', 'LRT', and 'PB'
- 'afex_aov' and 'mixed' objects can be passed to emmeans() for follow-up tests
- Get and set global package options with: afex_options()
- Set sum-to-zero contrasts globally: set_sum_contrasts()
- For example analyses see: browseVignettes("afex")
************
Attaching package: 'afex'
The following object is masked from 'package:lme4':
lmer
>
> test_check("afex")
Mixed Model Anova Table (Type 3 tests, S-method)
Model: value ~ treatment + (1 | id)
Data: obk.long
Effect df F p.value
1 treatment 2, 8.24 2.19 .173
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
Mixed Model Anova Table (Type 3 tests, S-method)
Model: value ~ treatment + phase + (1 | id)
Data: obk.long
Effect df F p.value
1 treatment 2, 12.78 2.88 + .093
2 phase 2, 222.08 38.51 *** <.001
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
Mixed Model Anova Table (Type 3 tests, LRT-method)
Model: value ~ treatment + (1 | id)
Data: obk.long
Df full model: 5
Effect df Chisq p.value
1 treatment 2 NaN <NA>
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
Mixed Model Anova Table (Type 3 tests, LRT-method)
Model: value ~ treatment + phase + (1 | id)
Data: obk.long
Df full model: 7
Effect df Chisq p.value
1 treatment 2 NaN <NA>
2 phase 2 NaN <NA>
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
Mixed Model Anova Table (Type 3 tests, PB-method)
Model: use ~ urban + (1 | district)
Data: Contraception
Effect df Chisq p.value
1 urban 1 31.28 .333
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
Mixed Model Anova Table (Type 3 tests, PB-method)
Model: use ~ urban + livch + (1 | district)
Data: Contraception
Effect df Chisq p.value
1 urban 1 36.33 .333
2 livch 3 77.91 .333
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '+' 0.1 ' ' 1
[ FAIL 9 | WARN 496 | SKIP 29 | PASS 332 ]
══ Skipped tests (29) ══════════════════════════════════════════════════════════
• On CRAN (28): 'test-afex_plot-basics.R:11:3', 'test-afex_plot-basics.R:76:3',
'test-afex_plot-basics.R:111:3', 'test-afex_plot-basics.R:140:3',
'test-afex_plot-basics.R:346:3', 'test-afex_plot-basics.R:360:3',
'test-afex_plot-bugs.R:6:3', 'test-afex_plot-bugs.R:21:3',
'test-afex_plot-bugs.R:43:3', 'test-afex_plot-bugs.R:79:3',
'test-afex_plot-default-support.R:11:3',
'test-afex_plot-default-support.R:20:3',
'test-afex_plot-default-support.R:38:3',
'test-afex_plot-default-support.R:66:3', 'test-afex_plot-vignette.R:4:3',
'test-afex_plot-vignette.R:38:3', 'test-afex_plot-vignette.R:114:3',
'test-aov_car-bugs.R:253:3', 'test-emmeans-interface.R:144:3',
'test-emmeans-interface.R:209:3', 'test-mixed-bugs.R:6:3',
'test-mixed-bugs.R:19:3', 'test-mixed-structure.R:214:5',
'test-mixed-structure.R:242:3', 'test-mixed-structure.R:264:3',
'test-mixed-structure.R:305:3', 'test-mixed-structure.R:349:3',
'test-mixed-structure.R:369:3'
• empty test (1): 'test-mixed-structure.R:86:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-mixed-mw.R:10:3'): mixed: Maxell & Delaney (2004), Table 16.3, p. 837 ──
`x` not equal to `expected`.
1/1 mismatches
[1] 3.28 - 9.97 == -6.69
Backtrace:
▆
1. └─testthat::expect_that(round(anova(mixed1_orig)[1, "F"], 2), equals(9.97)) at test-mixed-mw.R:10:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
── Failure ('test-mixed-mw.R:11:3'): mixed: Maxell & Delaney (2004), Table 16.3, p. 837 ──
`x` not equal to `expected`.
1/1 mismatches
[1] 0.83 - 0.03 == 0.8
Backtrace:
▆
1. └─testthat::expect_that(...) at test-mixed-mw.R:11:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
── Failure ('test-mixed-mw.R:20:3'): mixed: Maxell & Delaney (2004), Table 16.6, p. 845 ──
unname(round(fixef(mixed2_orig$full_model), 4)) not equivalent to c(35.6261, -8.1485).
2/2 mismatches (average diff: 0.0848)
[1] 35.54 - 35.63 == -0.0821
[2] -8.06 - -8.15 == 0.0875
── Failure ('test-mixed-mw.R:23:3'): mixed: Maxell & Delaney (2004), Table 16.6, p. 845 ──
`x` not equal to `expected`.
2/2 mismatches (average diff: 1.12)
[1] 4.16 - 3.23 == 0.927
[2] 5.86 - 4.55 == 1.315
Backtrace:
▆
1. └─testthat::expect_that(...) at test-mixed-mw.R:23:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
── Failure ('test-mixed-mw.R:27:3'): mixed: Maxell & Delaney (2004), Table 16.6, p. 845 ──
`x` not equal to `expected`.
1/1 mismatches
[1] 1.9 - 3.2 == -1.3
Backtrace:
▆
1. └─testthat::expect_that(round(mixed2_orig[[1]]$F, 1), equals(3.2)) at test-mixed-mw.R:27:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
── Failure ('test-mixed-mw.R:39:3'): mixed: Maxell & Delaney (2004), Table 16.7, p. 851 (uses simple F!) ──
`x` not equivalent to `expected`.
2/3 mismatches (average diff: 0.26)
[1] 20.05 - 20.25 == -0.20
[2] -7.25 - -7.57 == 0.32
Backtrace:
▆
1. └─testthat::expect_that(...) at test-mixed-mw.R:39:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equivalent(x, expected, expected.label = label)
── Failure ('test-mixed-mw.R:41:3'): mixed: Maxell & Delaney (2004), Table 16.7, p. 851 (uses simple F!) ──
`x` not equal to `expected`.
3/3 mismatches (average diff: 3.42)
[1] 12.1 - 5.82 == 6.30
[2] 5.8 - 2.72 == 3.08
[3] 1.7 - 0.81 == 0.89
Backtrace:
▆
1. └─testthat::expect_that(...) at test-mixed-mw.R:41:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
── Failure ('test-mixed-mw.R:45:3'): mixed: Maxell & Delaney (2004), Table 16.7, p. 851 (uses simple F!) ──
`x` not equal to `expected`.
2/2 mismatches (average diff: 6)
[1] 2 - 8 == -6
[2] 2 - 8 == -6
Backtrace:
▆
1. └─testthat::expect_that(...) at test-mixed-mw.R:45:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equal(x, expected, ..., expected.label = label)
── Failure ('test-mixed-mw.R:58:3'): mixed: Maxell & Delaney (2004), Table 16.10, p. 862 (does not replicate the table!) ──
`x` not equivalent to `expected`.
4/4 mismatches (average diff: 0.153)
[1] 35.90 - 36.10 == -0.20
[2] -8.87 - -9.07 == 0.20
[3] 0.72 - 0.64 == 0.08
[4] -0.10 - 0.03 == -0.13
Backtrace:
▆
1. └─testthat::expect_that(...) at test-mixed-mw.R:58:3
2. └─testthat (local) condition(object)
3. └─testthat::expect_equivalent(x, expected, expected.label = label)
[ FAIL 9 | WARN 496 | SKIP 29 | PASS 332 ]
Deleting unused snapshots:
• afex_plot-basics/afex-plot-connecting-individual-points-works.svg
• afex_plot-basics/geoms-work-box-plot.svg
• afex_plot-basics/geoms-work-boxjitter-1.svg
• afex_plot-basics/geoms-work-boxjitter-2.svg
• afex_plot-basics/geoms-work-boxjitter-3.svg
• afex_plot-basics/geoms-work-geom-count.svg
• afex_plot-basics/geoms-work-ggbeeswarm-geom-beeswarm.svg
• afex_plot-basics/geoms-work-ggbeeswarm-geom-quasirandom.svg
• afex_plot-basics/geoms-work-jitterdodge.svg
• afex_plot-basics/geoms-work-violin-with-colour.svg
• afex_plot-basics/geoms-work-violin.svg
• afex_plot-basics/lme4-mermod-plot-2.svg
• afex_plot-basics/lme4-mermod-plot-3.svg
• afex_plot-basics/mixed-model-1.svg
• afex_plot-basics/mixed-model-2.svg
• afex_plot-basics/mixed-model-3.svg
• afex_plot-basics/mixed-model-4.svg
• afex_plot-basics/multiple-geoms-work-1.svg
• afex_plot-basics/multiple-geoms-work-2.svg
• afex_plot-basics/one-way-within.svg
• afex_plot-basics/plot-first-for-afex-plot-works-1.svg
• afex_plot-basics/plot-first-for-afex-plot-works-2.svg
• afex_plot-basics/plot-first-for-afex-plot-works-3.svg
• afex_plot-basics/plot-first-for-afex-plot-works-4.svg
• afex_plot-basics/two-way.svg
• afex_plot-basics/x-trace-panel.svg
• afex_plot-bugs/afex-plot-binomial-glm-with-factor-2.svg
• afex_plot-bugs/afex-plot-dv-y-works.svg
• afex_plot-bugs/afex-plot-lmm-type-2.svg
• afex_plot-bugs/afex-plot-mermod-objects-with-missing-data.svg
• afex_plot-default-support/afex-plots-binomial-glm-1.svg
• afex_plot-default-support/afex-plots-binomial-glm-2.svg
• afex_plot-default-support/afex-plots-lm-model-2.svg
• afex_plot-default-support/afex-plots-nlme-2.svg
• afex_plot-default-support/afex-plots-nlme-3.svg
• afex_plot-default-support/afex-plots-nlme-4.svg
• afex_plot-default-support/afex-plots-nlme-5.svg
• afex_plot-default-support/afex-plots-poisson-glm-1.svg
• afex_plot-default-support/afex-plots-poisson-glm-2.svg
• afex_plot-vignette/afex-plot-glmmtmb-1.svg
• afex_plot-vignette/afex-plot-glmmtmb-2.svg
• afex_plot-vignette/afex-plot-glmmtmb-3.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 4, OK: 11
Version: 1.0-2
Check: installed package size
Result: NOTE
installed size is 12.0Mb
sub-directories of 1Mb or more:
doc 1.6Mb
libs 9.5Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 14, OK: 1
Version: 1.14.1
Check: Rd files
Result: NOTE
checkRd: (-1) get.mpt.fia.Rd:60: Lost braces
60 | \item{lnconst}{When inequality constraints are present, \code{lnconst} serves as an adjustment of code{lnInt}. It estimates the logarithm of the proportion of parameter space [0,1]^S that satisfies those inequality constraints, and the log integral term is given by \code{lnInt+lnconst}.
| ^
checkRd: (-1) prediction.plot.Rd:38: Lost braces
38 | The labels on the x-axis. Default is \code{Tree 1} to code{Tree n}.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 1.14.1
Check: installed package size
Result: NOTE
installed size is 13.3Mb
sub-directories of 1Mb or more:
libs 12.3Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: NOTE: 15
Version: 0.4-2
Check: Rd files
Result: NOTE
checkRd: (-1) fit_mpt.Rd:139-142: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit_mpt.Rd:143-148: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit_mpt.Rd:149-159: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit_mpt.Rd:167-168: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit_mpt.Rd:169: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit_mpt.Rd:170: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit_mpt.Rd:171: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit_mpt.Rd:176-177: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit_mpt.Rd:178-179: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit_mpt.Rd:180-181: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit_mpt.Rd:182-184: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit_mpt.Rd:185-186: Lost braces in \itemize; meant \describe ?
checkRd: (-1) fit_mpt.Rd:187-188: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:23: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) mpt_options.Rd:27: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.4-2
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: NOTE: 12, OK: 3
Version: 0.11-5
Check: Rd files
Result: NOTE
checkRd: (-1) LBA-race.Rd:157: Lost braces
157 | corresponding (and not first) accumulator winning see /code{/link{LBA}}.
| ^
checkRd: (-1) LBA-race.Rd:157: Lost braces
157 | corresponding (and not first) accumulator winning see /code{/link{LBA}}.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64