CRAN Package Check Results for Package soil.spec

Last updated on 2015-06-30 18:47:34.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.4 6.04 72.64 78.68 NOTE
r-devel-linux-x86_64-debian-gcc 2.1.4 5.53 71.73 77.26 NOTE
r-devel-linux-x86_64-fedora-clang 2.1.4 162.39 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1.4 158.22 NOTE
r-devel-osx-x86_64-clang 2.1.4 115.78 NOTE
r-devel-windows-ix86+x86_64 2.1.4 15.00 113.00 128.00 NOTE
r-patched-linux-x86_64 2.1.4 5.62 72.28 77.90 NOTE
r-patched-solaris-sparc 2.1.4 900.70 ERROR
r-patched-solaris-x86 2.1.4 233.80 NOTE
r-release-linux-x86_64 2.1.4 5.52 74.32 79.84 NOTE
r-release-osx-x86_64-mavericks 2.1.4 NOTE
r-release-windows-ix86+x86_64 2.1.4 24.00 106.00 130.00 NOTE
r-oldrel-windows-ix86+x86_64 2.1.4 39.00 206.00 245.00 NOTE

Check Details

Version: 2.1.4
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘chemometrics’ ‘spatstat’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.1.4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.Spectra plot.ken.sto plot.trans predict.SpectraPoints
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 2.1.4
Check: R code for possible problems
Result: NOTE
    .read.opus: no visible global function definition for ‘mtext’
    fit.SpectraModel: no visible binding for global variable ‘na.omit’
    fit.SpectraModel: no visible global function definition for ‘coef’
    fit.SpectraModel: no visible global function definition for
     ‘as.formula’
    ken.sto: no visible global function definition for ‘dist’
    ken.sto: no visible global function definition for ‘dev.new’
    ken.sto: no visible global function definition for ‘par’
    ken.sto: no visible global function definition for ‘points’
    plot.Spectra: no visible global function definition for ‘par’
    plot.Spectra: no visible global function definition for ‘na.omit’
    plot.Spectra: no visible global function definition for ‘axis’
    plot.Spectra: no visible global function definition for ‘lines’
    plot.Spectra: no visible global function definition for ‘box’
    plot.Spectra: no visible global function definition for ‘mtext’
    plot.ken.sto: no visible global function definition for ‘dev.new’
    plot.ken.sto: no visible global function definition for ‘par’
    plot.ken.sto: no visible global function definition for ‘points’
    plot.trans: no visible global function definition for ‘dev.new’
    plot.trans: no visible global function definition for ‘par’
    plot.trans: no visible global function definition for ‘lines’
    predict.SpectraPoints: no visible global function definition for ‘qt’
    read.spc: no visible global function definition for ‘lines’
    read.spc: no visible global function definition for ‘graphics.off’
    read.spc: no visible global function definition for ‘abline’
    trans: no visible global function definition for ‘sortedXyData’
    trans: no visible global function definition for ‘chull’
    trans: no visible global function definition for ‘approx’
    trans: no visible global function definition for ‘dev.new’
    trans: no visible global function definition for ‘par’
    trans: no visible global function definition for ‘lines’
    validate.SpectraPoints: no visible global function definition for
     ‘quantile’
    plot,Spectra-ANY: no visible global function definition for ‘par’
    plot,Spectra-ANY: no visible global function definition for ‘na.omit’
    plot,Spectra-ANY: no visible global function definition for ‘axis’
    plot,Spectra-ANY: no visible global function definition for ‘lines’
    plot,Spectra-ANY: no visible global function definition for ‘box’
    plot,Spectra-ANY: no visible global function definition for ‘mtext’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64

Version: 2.1.4
Check: examples
Result: ERROR
    Running examples in ‘soil.spec-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: read.opus-method
    > ### Title: Reads binary OPUS files containing spectroscopy
    > ### Aliases: read.opus read.opus,character-method read.opus,list-method
    > ### Keywords: methods
    >
    > ### ** Examples
    >
    > ## Original binary Opus files:
    > pth = system.file(package = "soil.spec")
    > lst <- as.list(list.files(path=pth, pattern="*.0$", full.names=TRUE))
    > file.info(lst[[1]])
     size isdir mode
    /home/ripley/R/Lib32/soil.spec/icr_087266_B2.0 167196 FALSE 644
     mtime
    /home/ripley/R/Lib32/soil.spec/icr_087266_B2.0 2015-06-19 11:46:07
     ctime
    /home/ripley/R/Lib32/soil.spec/icr_087266_B2.0 2015-06-19 11:47:07
     atime uid gid
    /home/ripley/R/Lib32/soil.spec/icr_087266_B2.0 2015-06-19 11:46:07 501 1
     uname grname
    /home/ripley/R/Lib32/soil.spec/icr_087266_B2.0 ripley other
    > xx <- read.opus(lst)
    Error in seq.default(lxv, fxv, (fxv - lxv)/(NPT1 - 1)) :
     wrong sign in 'by' argument
    Calls: read.opus ... read.opus -> lapply -> FUN -> rev -> seq -> seq.default
    Execution halted
Flavor: r-patched-solaris-sparc