CRAN Package Check Results for Package soil.spec

Last updated on 2015-03-05 10:50:12.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.4 6.33 78.54 84.87 NOTE
r-devel-linux-x86_64-debian-gcc 2.1.4 5.92 77.28 83.20 NOTE
r-devel-linux-x86_64-fedora-clang 2.1.4 168.07 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1.4 160.65 NOTE
r-devel-osx-x86_64-clang 2.1.4 153.58 NOTE
r-devel-windows-ix86+x86_64 2.1.4 18.00 116.00 134.00 NOTE
r-patched-linux-x86_64 2.1.4 11.24 115.84 127.08 NOTE
r-patched-solaris-sparc 2.1.4 1393.50 ERROR
r-patched-solaris-x86 2.1.4 357.50 NOTE
r-release-linux-ix86 2.1.4 11.40 126.60 138.00 OK
r-release-linux-x86_64 2.1.4 11.22 120.93 132.15 OK
r-release-osx-x86_64-mavericks 2.1.4 ERROR
r-release-osx-x86_64-snowleopard 2.1.4 ERROR
r-release-windows-ix86+x86_64 2.1.4 31.00 184.00 215.00 OK
r-oldrel-windows-ix86+x86_64 2.1.4 33.00 196.00 229.00 OK

Check Details

Version: 2.1.4
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘chemometrics’ ‘spatstat’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 2.1.4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.Spectra plot.ken.sto plot.trans predict.SpectraPoints
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 2.1.4
Check: examples
Result: ERROR
    Running examples in ‘soil.spec-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: read.opus-method
    > ### Title: Reads binary OPUS files containing spectroscopy
    > ### Aliases: read.opus read.opus,character-method read.opus,list-method
    > ### Keywords: methods
    >
    > ### ** Examples
    >
    > ## Original binary Opus files:
    > pth = system.file(package = "soil.spec")
    > lst <- as.list(list.files(path=pth, pattern="*.0$", full.names=TRUE))
    > file.info(lst[[1]])
     size isdir mode
    /home/ripley/R/Lib32/soil.spec/icr_087266_B2.0 167196 FALSE 644
     mtime
    /home/ripley/R/Lib32/soil.spec/icr_087266_B2.0 2015-02-27 23:42:30
     ctime
    /home/ripley/R/Lib32/soil.spec/icr_087266_B2.0 2015-02-27 23:44:10
     atime uid gid
    /home/ripley/R/Lib32/soil.spec/icr_087266_B2.0 2015-03-02 02:21:21 501 1
     uname grname
    /home/ripley/R/Lib32/soil.spec/icr_087266_B2.0 ripley other
    > xx <- read.opus(lst)
    Error in seq.default(lxv, fxv, (fxv - lxv)/(NPT1 - 1)) :
     wrong sign in 'by' argument
    Calls: read.opus ... read.opus -> lapply -> FUN -> rev -> seq -> seq.default
    Execution halted
Flavor: r-patched-solaris-sparc

Version: 2.1.4
Check: package dependencies
Result: ERROR
    Package required but not available: ‘GSIF’
    
    Packages suggested but not available for checking: ‘plotKML’ ‘rgdal’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 2.1.4
Check: package dependencies
Result: ERROR
    Package required but not available: ‘GSIF’
    
    Package suggested but not available for checking: ‘plotKML’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-snowleopard